genome.fa.s14780.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014780.1 Kokia drynarioides strain JFW-HI SEQ_129822, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136343

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100--159	20	3.0	20	87	2	84	5	33	0	61	1.17
18970--18996	6	4.5	6	100	0	54	14	14	37	33	1.88
18970--19004	18	1.9	18	88	0	52	14	17	37	31	1.89
27675--27732	26	2.1	28	84	6	75	44	8	10	36	1.69
27773--27812	21	1.9	21	89	0	62	25	12	7	55	1.63
28677--28758	23	3.6	23	95	3	139	51	0	1	47	1.08
29097--29134	18	2.2	18	90	4	60	50	0	2	47	1.15
29416--29456	22	2.0	20	85	9	55	43	2	2	51	1.28
29491--29540	18	2.8	18	80	19	61	54	2	0	44	1.11
29813--29870	28	2.1	28	93	6	100	51	8	5	34	1.55
30354--30445	28	3.2	28	75	14	80	35	1	0	63	1.02
31048--31090	18	2.5	17	84	3	50	58	4	0	37	1.19
31053--31090	17	2.2	18	85	4	51	60	5	0	34	1.19
45147--45211	31	2.1	32	88	8	98	43	0	1	55	1.09
47104--47132	10	2.7	11	94	5	51	0	17	0	82	0.66
47941--48024	41	2.0	41	91	8	136	55	7	16	20	1.64
49289--49314	3	8.7	3	100	0	52	34	30	34	0	1.58
49861--49898	19	2.1	19	90	5	60	31	0	5	63	1.17
57098--57156	30	1.9	31	89	3	93	38	22	0	38	1.54
64340--65713	206	6.7	206	88	1	1944	35	19	22	22	1.96
64340--65713	413	3.3	412	87	1	1975	35	19	22	22	1.96
64340--65713	619	2.2	619	92	0	2282	35	19	22	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66088--66143	6	9.7	6	78	7	62	44	0	1	53	1.11
66091--66133	17	2.5	17	92	0	68	41	0	2	55	1.12
66091--66145	17	3.2	16	82	10	65	45	0	1	52	1.11
66088--66145	23	2.5	23	80	0	71	46	0	1	51	1.11
67083--67409	168	1.9	168	98	0	627	20	25	40	14	1.90
67992--68172	29	6.2	29	74	14	135	37	25	4	32	1.76
67992--68179	58	3.2	57	79	10	179	37	25	4	32	1.77
72794--72832	18	2.2	18	86	9	53	56	0	2	41	1.13
76574--76598	13	1.9	13	100	0	50	36	0	0	64	0.94
77347--77397	15	3.5	15	71	15	52	25	9	11	52	1.68
80072--80097	12	2.2	12	100	0	52	69	7	0	23	1.14
80074--80154	41	2.0	41	90	0	126	62	11	3	22	1.43
81213--81263	22	2.4	22	83	3	59	49	0	1	49	1.12
83796--83842	25	2.0	23	87	8	67	31	2	6	59	1.34
84221--84259	14	2.7	15	80	8	53	28	7	7	56	1.55
89170--89332	23	7.4	23	72	14	110	43	21	22	12	1.86
89176--89250	39	1.9	39	86	0	105	45	20	21	13	1.84
89215--89324	46	2.4	46	79	8	125	41	22	21	13	1.88
91640--91690	25	2.1	25	96	3	95	21	0	19	58	1.39
91648--91701	25	2.2	25	83	3	74	24	0	14	61	1.34
95005--95070	22	3.0	21	76	10	69	54	0	3	42	1.15
104367--104425	25	2.4	25	94	0	100	40	18	27	13	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104367--104433	25	2.6	25	90	2	89	43	17	26	11	1.84
104435--104486	22	2.3	23	86	6	79	40	25	23	11	1.88
124926--124983	29	2.0	29	89	0	89	27	18	24	29	1.98
131373--131579	43	4.8	42	75	6	175	36	12	24	27	1.91
133912--133978	33	2.0	33	91	0	107	40	20	14	23	1.90
135162--135224	17	3.7	17	91	4	92	44	0	4	50	1.23
135260--135311	15	3.5	15	83	0	77	30	28	23	17	1.97
135251--135323	30	2.5	30	95	2	130	38	26	20	15	1.92
135251--135329	15	5.4	14	73	11	68	37	26	18	16	1.92
135885--135955	28	2.4	29	81	4	81	46	2	2	47	1.31

Tables:   1

The End!