genome.fa.s14781.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014781.1 Kokia drynarioides strain JFW-HI SEQ_129823, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  419268

Tables:   1   

This is table  1  of  1  ( 102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
438--787	59	5.9	60	83	5	351	34	4	28	33	1.76
438--767	30	11.2	30	76	7	282	33	4	28	33	1.77
1879--1914	3	12.0	3	100	0	72	33	0	0	66	0.92
2633--2717	6	14.3	6	70	11	50	54	5	1	38	1.33
2633--2717	11	7.2	12	70	11	50	54	5	1	38	1.33
2633--2718	17	4.8	17	77	11	75	53	6	1	38	1.36
15171--15354	61	3.0	61	100	0	368	41	17	22	17	1.90
20522--20569	19	2.5	19	93	0	78	37	4	25	33	1.75
31648--31678	3	10.0	3	93	6	53	67	0	32	0	0.91
36833--36905	23	3.2	23	90	0	119	41	23	24	10	1.86
37236--37292	27	2.1	27	100	0	114	33	14	17	35	1.90
47173--47215	18	2.3	18	84	11	52	48	0	18	32	1.48
48615--48655	18	2.3	18	86	0	55	24	0	0	75	0.80
48606--48642	4	9.5	4	83	16	51	18	2	0	78	0.87
50121--50159	18	2.2	18	86	9	53	43	2	0	53	1.14
50304--50367	19	3.2	20	76	17	62	43	3	3	50	1.33
51403--51456	24	2.3	24	87	9	76	62	1	0	35	1.06
51407--51447	8	5.1	8	80	19	50	63	2	0	34	1.08
65303--65336	2	17.0	2	100	0	68	50	0	0	50	1.00
65978--66006	13	2.1	14	93	6	51	62	3	0	34	1.12
73193--73221	14	2.1	14	100	0	58	27	13	20	37	1.91
74377--74476	52	1.9	52	83	0	128	28	13	22	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77469--77493	2	12.5	2	100	0	50	52	0	0	48	1.00
80986--81032	24	2.0	24	83	8	60	19	27	4	48	1.67
81519--81566	23	2.0	23	84	4	60	56	0	2	41	1.11
82504--82532	15	1.9	15	100	0	58	44	20	0	34	1.52
83341--83421	23	3.5	23	83	5	101	32	9	17	40	1.82
85903--85928	12	2.2	12	100	0	52	69	7	0	23	1.14
85905--85984	41	2.0	41	87	0	115	63	11	3	21	1.42
94300--94342	22	2.0	22	85	0	59	30	18	6	44	1.76
95843--95867	6	4.2	6	100	0	50	16	0	68	16	1.22
114375--114407	9	3.8	9	92	4	50	21	0	0	78	0.75
114374--114406	15	2.2	15	89	10	50	21	0	0	78	0.75
120466--120505	17	2.3	18	91	4	64	55	2	5	37	1.35
120635--120664	3	10.0	3	100	0	60	66	0	0	33	0.92
120809--120867	24	2.3	26	82	5	77	25	1	0	72	0.93
120945--121023	21	3.8	20	69	23	56	56	1	2	39	1.21
120936--121028	31	3.0	30	76	17	91	54	1	3	40	1.23
121018--121053	17	2.1	17	90	10	56	41	2	0	55	1.14
122555--122604	21	2.4	22	74	16	52	40	2	2	56	1.22
125741--125779	20	2.0	20	89	0	60	64	0	5	30	1.15
126199--126236	20	1.9	20	88	0	58	55	5	2	36	1.37
131104--131200	42	2.3	42	87	0	140	25	16	39	18	1.91
134201--134328	66	1.9	66	80	0	148	34	7	32	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137390--137442	7	7.6	7	95	0	79	18	41	9	30	1.82
157558--157583	3	8.7	3	100	0	52	65	0	0	34	0.93
165148--165187	18	2.4	17	87	8	55	62	5	27	5	1.37
203002--203029	6	4.7	6	100	0	56	17	17	64	0	1.30
208945--208971	5	5.4	5	100	0	54	18	0	59	22	1.38
216329--216421	47	2.0	47	100	0	186	36	17	17	29	1.92
226220--226265	23	2.0	23	83	4	58	47	0	6	45	1.28
239349--239573	60	3.8	60	74	13	196	29	16	14	39	1.88
239348--239587	120	2.0	119	80	8	265	28	15	14	41	1.86
239598--239831	117	2.0	119	79	7	253	39	16	15	28	1.89
239854--239966	59	1.9	58	81	1	136	32	15	17	34	1.91
249807--249851	21	2.0	23	91	8	76	62	0	0	37	0.96
249792--249868	30	2.6	30	78	10	77	64	0	0	35	0.93
253506--253564	28	2.1	29	90	3	93	54	13	3	28	1.55
278875--278906	15	2.2	15	94	5	57	37	3	0	59	1.13
291190--291308	60	2.0	60	89	0	184	39	4	11	44	1.60
291215--291309	30	3.2	30	69	16	97	38	3	11	46	1.56
291224--291319	30	3.2	30	70	20	92	39	3	13	43	1.60
293085--293166	40	2.0	40	85	0	110	36	29	17	17	1.92
294942--294966	7	3.6	7	100	0	50	84	0	0	16	0.63
301405--301447	15	2.8	16	78	7	52	32	0	0	67	0.91
301565--301606	17	2.6	17	85	7	52	57	0	4	38	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315198--315228	16	1.9	16	100	0	62	45	0	0	54	0.99
315353--315387	12	2.8	12	95	4	61	25	5	2	65	1.28
318262--318309	24	2.0	24	100	0	96	41	20	12	25	1.87
325157--325233	29	2.6	28	74	13	66	51	9	10	28	1.66
328887--328911	2	12.5	2	100	0	50	52	0	0	48	1.00
334432--334501	26	2.6	27	86	4	106	38	18	4	38	1.71
334433--334517	27	3.2	27	83	6	93	37	20	5	36	1.77
337262--337442	99	1.8	99	90	1	292	39	8	8	43	1.65
344861--344896	6	6.0	6	96	0	63	66	2	0	30	1.06
350359--350594	65	3.8	61	78	7	192	36	25	2	35	1.68
351088--351129	22	2.0	21	90	9	68	19	4	14	61	1.49
361156--361186	13	2.4	13	94	0	53	0	12	0	87	0.55
361691--361732	21	2.0	21	95	0	75	33	11	4	50	1.60
364712--364773	31	2.0	31	87	6	90	40	16	12	30	1.86
371817--371847	16	1.9	16	93	0	53	38	0	0	61	0.96
375098--375149	21	2.5	21	81	6	61	34	26	11	26	1.91
375983--376353	201	1.9	195	83	6	482	27	26	17	28	1.98
378182--378226	17	2.6	17	79	6	56	55	0	0	44	0.99
378203--378291	39	2.3	39	82	9	101	42	1	3	52	1.25
378358--378401	13	3.2	13	81	12	52	54	2	0	43	1.12
379599--379650	27	2.0	27	92	3	88	38	17	3	40	1.68
384084--384199	58	2.0	58	94	0	205	31	21	22	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389052--389125	27	2.7	27	79	4	69	29	20	31	18	1.97
393752--393816	31	2.1	30	81	10	78	38	9	7	44	1.65
396850--397041	105	1.8	105	94	0	339	43	17	5	33	1.72
397289--397343	28	2.0	27	82	10	67	47	5	21	25	1.72
402533--402559	2	13.5	2	100	0	54	51	0	0	48	1.00
402680--402712	10	3.3	10	84	16	50	72	0	0	27	0.85
403077--403216	75	1.9	75	96	0	262	35	16	15	32	1.90
406366--406395	2	15.0	2	100	0	60	50	0	0	50	1.00
407540--407591	24	2.2	25	86	6	72	21	5	69	3	1.26
407613--407662	26	2.0	25	84	4	64	40	0	0	60	0.97
409710--409761	21	2.5	21	83	0	77	65	19	3	11	1.40
414820--414891	33	2.2	33	85	9	94	50	5	4	40	1.45
415903--416027	61	2.0	61	98	0	241	32	15	14	38	1.87
417750--417779	10	3.0	10	95	0	51	43	0	0	56	0.99

Tables:   1

The End!