Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014789.1 Kokia drynarioides strain JFW-HI SEQ_129831, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5425
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35


Found at i:2792 original size:21 final size:21

Alignment explanation


    Indices: 2768--2818  Score: 102
    Period size: 21  Copynumber: 2.4  Consensus size: 21

       2758 TACTCTCATT

                                 
       2768 TTTTTCTCTCATTCTTTCTCC
          1 TTTTTCTCTCATTCTTTCTCC

                                 
       2789 TTTTTCTCTCATTCTTTCTCC
          1 TTTTTCTCTCATTCTTTCTCC

                     
       2810 TTTTTCTCT
          1 TTTTTCTCT

       2819 TCCATGGCAG


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   30  1.00

ACGTcount: A:0.04, C:0.31, G:0.00, T:0.65


Consensus pattern (21 bp):   
TTTTTCTCTCATTCTTTCTCC

Found at i:2792 original size:23 final size:23

Alignment explanation


    Indices: 2761--2814  Score: 85
    Period size: 21  Copynumber: 2.4  Consensus size: 23

       2751 TTCGGATTAC

                *                  
       2761 TCTCATTTTTTTCTCTCATTCTT
          1 TCTCCTTTTTTTCTCTCATTCTT

                                   
       2784 TCTCC--TTTTTCTCTCATTCTT
          1 TCTCCTTTTTTTCTCTCATTCTT

                      
       2805 TCTCCTTTTT
          1 TCTCCTTTTT

       2815 CTCTTCCATG


Statistics
Matches: 28,  Mismatches: 1, Indels: 4
        0.85            0.03        0.12

Matches are distributed among these distances:
  21   21  0.75
  23    7  0.25

ACGTcount: A:0.06, C:0.30, G:0.00, T:0.65


Consensus pattern (23 bp):   
TCTCCTTTTTTTCTCTCATTCTT
Done.