Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001479.1 Kokia drynarioides strain JFW-HI SEQ_113010, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13901
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:8162 original size:2 final size:2

Alignment explanation


    Indices: 8155--8179  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

       8145 TTTTACTTTT

                                                 
       8155 TC TC TC TC TC TC TC TC TC TC TC TC T
          1 TC TC TC TC TC TC TC TC TC TC TC TC T

       8180 ATCCTTTTCT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52


Consensus pattern (2 bp):   
TC

Found at i:12961 original size:25 final size:25

Alignment explanation


    Indices: 12927--12999  Score: 119
    Period size: 25  Copynumber: 2.9  Consensus size: 25

      12917 TATTCGGAAC

                                     
      12927 AACAGAGAGCACAAAAGTGCTAGGT
          1 AACAGAGAGCACAAAAGTGCTAGGT

                                     
      12952 AACAGAGAGCACAAAAGTGCTAGGT
          1 AACAGAGAGCACAAAAGTGCTAGGT

                    *      *       
      12977 AACAGAGAACACACACAGTGCTA
          1 AACAGAGAGCACA-AAAGTGCTA

      13000 AACAGAGAGT


Statistics
Matches: 45,  Mismatches: 2, Indels: 1
        0.94            0.04        0.02

Matches are distributed among these distances:
  25   37  0.82
  26    8  0.18

ACGTcount: A:0.45, C:0.19, G:0.25, T:0.11


Consensus pattern (25 bp):   
AACAGAGAGCACAAAAGTGCTAGGT

Found at i:13003 original size:23 final size:23

Alignment explanation


    Indices: 12977--13055  Score: 70
    Period size: 23  Copynumber: 3.3  Consensus size: 23

      12967 AGTGCTAGGT

                                   
      12977 AACAGAGAACACACACAGTGCTA
          1 AACAGAGAACACACACAGTGCTA

                    **     *   *   
      13000 AACAGAGAGTACACAAAGTACTA
          1 AACAGAGAACACACACAGTGCTA

             **                      
      13023 ATTAGA-AAGCACACACAGTGCTAA
          1 AACAGAGAA-CACACACAGTGCT-A

                     
      13047 TAACAGAGA
          1 -AACAGAGA

      13056 GCGCGCTAGT


Statistics
Matches: 40,  Mismatches: 12, Indels: 5
        0.70            0.21        0.09

Matches are distributed among these distances:
  22    1  0.03
  23   33  0.82
  24    1  0.03
  25    4  0.10
  26    1  0.03

ACGTcount: A:0.49, C:0.20, G:0.18, T:0.13


Consensus pattern (23 bp):   
AACAGAGAACACACACAGTGCTA
Done.