genome.fa.s14790.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014790.1 Kokia drynarioides strain JFW-HI SEQ_129832, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  196461

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65--100	2	18.0	2	94	0	63	50	2	0	47	1.15
505--587	17	5.2	17	72	19	63	40	3	2	53	1.32
519--583	28	2.3	28	79	12	80	40	4	1	53	1.31
2315--2616	29	10.4	29	72	13	151	36	23	3	36	1.73
2315--2594	30	9.6	30	72	12	165	35	24	3	36	1.73
2372--2535	87	1.9	88	81	11	203	35	24	2	37	1.69
2362--2591	58	4.0	57	76	11	177	36	23	2	36	1.69
2487--2616	58	2.2	59	83	8	167	38	22	2	36	1.67
2515--2818	29	10.6	27	69	14	114	33	27	5	32	1.81
11991--12015	5	5.0	5	100	0	50	60	20	20	0	1.37
15148--15201	10	5.9	9	79	16	58	29	0	1	68	1.00
15148--15201	18	2.9	17	82	15	63	29	0	1	68	1.00
15149--15190	19	2.2	19	91	8	68	23	0	2	73	0.94
20097--20126	15	2.0	15	100	0	60	13	20	13	53	1.72
28210--28259	26	1.9	26	95	0	91	18	18	14	50	1.79
31173--31197	4	6.2	4	100	0	50	24	24	24	28	2.00
34146--34473	161	2.0	161	95	1	588	30	21	15	32	1.94
37066--37149	31	2.8	31	81	3	91	48	5	17	27	1.70
39088--39157	31	2.3	30	80	7	86	45	5	4	44	1.47
44266--44361	49	2.0	49	95	0	174	23	14	22	38	1.92
50183--50228	23	2.0	23	100	0	92	39	13	8	39	1.75
55868--55931	31	2.1	31	87	0	92	21	18	21	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56918--56963	19	2.4	19	96	3	83	60	21	4	13	1.49
62829--62867	16	2.5	15	80	8	51	35	0	0	64	0.94
63341--63370	5	6.2	5	92	7	53	56	0	0	43	0.99
71270--71302	13	2.3	15	90	10	52	54	12	6	27	1.60
71431--71558	69	1.9	68	83	4	168	52	7	1	39	1.38
71623--71677	25	2.2	26	83	3	67	38	14	9	38	1.78
76111--76162	11	4.5	11	74	9	50	30	0	1	67	1.02
82305--82431	56	2.3	56	94	0	218	37	13	15	33	1.87
85681--85982	100	3.0	100	100	0	604	30	22	13	32	1.93
88069--88138	12	5.9	12	79	3	61	70	18	5	5	1.28
88069--88137	23	3.0	23	80	2	75	69	18	5	5	1.29
88076--88149	35	2.1	35	82	0	85	67	20	5	6	1.34
88791--88853	20	2.8	22	72	16	58	57	1	4	36	1.30
88789--88846	21	2.8	20	73	7	53	56	1	3	37	1.26
90455--90526	36	2.0	36	86	0	99	23	37	13	25	1.92
95026--95115	31	2.9	31	81	0	99	44	13	7	34	1.72
98060--98171	23	4.6	25	76	13	119	13	24	19	42	1.87
101758--101796	15	2.5	16	88	12	55	64	0	0	35	0.94
101761--101796	16	2.2	16	90	5	54	69	0	0	30	0.89
119613--119653	2	20.5	2	89	0	64	56	0	0	43	0.99
122638--122668	10	3.1	10	100	0	62	51	19	9	19	1.74
133360--133469	23	4.9	22	79	9	114	37	26	23	12	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133333--133480	23	6.4	22	78	13	97	39	23	24	12	1.90
133544--133591	24	1.9	26	84	16	66	31	22	0	45	1.53
142342--142369	3	9.3	3	100	0	56	64	0	0	35	0.94
147765--147845	24	3.4	24	81	10	85	51	8	9	29	1.65
147833--147858	13	2.0	13	100	0	52	53	7	15	23	1.67
149805--149863	24	2.5	24	86	5	75	50	6	11	30	1.65
165911--165940	2	15.0	2	100	0	60	50	0	0	50	1.00
166571--166595	9	2.8	9	100	0	50	28	0	12	60	1.32
167571--167623	24	2.2	24	86	0	70	26	15	11	47	1.79
169409--169469	24	2.5	24	89	0	95	26	11	9	52	1.68
170904--171027	56	2.2	55	80	5	133	52	5	8	33	1.56
174206--174264	2	31.5	2	83	13	81	52	1	0	45	1.10
174927--174967	6	6.8	6	100	0	82	51	0	34	14	1.43
186592--186632	3	13.7	3	100	0	82	34	0	34	31	1.58

Tables:   1

The End!