Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014793.1 Kokia drynarioides strain JFW-HI SEQ_129835, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7646
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.32
Found at i:2799 original size:143 final size:143
Alignment explanation
Indices: 2541--2826 Score: 563
Period size: 143 Copynumber: 2.0 Consensus size: 143
2531 GCTTCTTTTG
2541 GCTGTTCTTAGAAATGTTTGGAGCATGACTTGCTAAAATTGTAAGCATTTGCTCTTCAGTTGCTG
1 GCTGTTCTTAGAAATGTTTGGAGCATGACTTGCTAAAATTGTAAGCATTTGCTCTTCAGTTGCTG
2606 ATGAAAATTTCCTTCCCTATATTTAGCAGTTCTGTCTTGGACATGATGCTTGTTAAGACAAGTTT
66 ATGAAAATTTCCTTCCCTATATTTAGCAGTTCTGTCTTGGACATGATGCTTGTTAAGACAAGTTT
2671 TTTTCTGTATGTT
131 TTTTCTGTATGTT
*
2684 GCTGTTCTTAGAAATGTTTGGAGCATGAGTTGCTAAAATTGTAAGCATTTGCTCTTCAGTTGCTG
1 GCTGTTCTTAGAAATGTTTGGAGCATGACTTGCTAAAATTGTAAGCATTTGCTCTTCAGTTGCTG
2749 ATGAAAATTTCCTTCCCTATATTTAGCAGTTCTGTCTTGGACATGATGCTTGTTAAGACAAGTTT
66 ATGAAAATTTCCTTCCCTATATTTAGCAGTTCTGTCTTGGACATGATGCTTGTTAAGACAAGTTT
2814 TTTTCTGTATGTT
131 TTTTCTGTATGTT
2827 AGTGAATTAC
Statistics
Matches: 142, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
143 142 1.00
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.42
Consensus pattern (143 bp):
GCTGTTCTTAGAAATGTTTGGAGCATGACTTGCTAAAATTGTAAGCATTTGCTCTTCAGTTGCTG
ATGAAAATTTCCTTCCCTATATTTAGCAGTTCTGTCTTGGACATGATGCTTGTTAAGACAAGTTT
TTTTCTGTATGTT
Done.