genome.fa.s14797.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014797.1 Kokia drynarioides strain JFW-HI SEQ_129839, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  194488

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
644--854	29	7.2	29	74	18	204	33	33	4	28	1.78
640--865	59	3.8	59	92	3	384	31	32	4	30	1.79
640--865	117	1.9	118	93	2	393	31	32	4	30	1.79
9554--9619	21	3.0	21	76	17	64	33	0	10	56	1.34
10471--10504	15	2.3	15	89	0	50	8	32	0	58	1.29
10571--10639	22	3.1	22	70	14	52	49	0	2	47	1.16
12499--12557	16	3.8	15	78	10	57	74	1	8	15	1.13
12497--12557	22	2.8	22	85	7	72	75	1	8	14	1.11
13324--13353	14	2.1	14	93	0	51	73	3	6	16	1.18
13355--13397	19	2.3	19	84	8	52	58	4	0	37	1.19
14857--14883	13	2.1	13	100	0	54	85	0	0	14	0.61
16600--16630	14	2.2	14	100	0	62	54	0	0	45	0.99
17308--17332	2	12.5	2	100	0	50	52	0	0	48	1.00
17986--18072	44	2.0	44	86	2	122	29	12	14	42	1.83
17995--18084	44	2.0	44	100	0	180	26	11	16	45	1.81
21078--21104	2	13.5	2	100	0	54	51	0	0	48	1.00
36305--36355	19	2.6	19	78	9	50	35	3	5	54	1.43
44844--44892	3	16.0	3	87	4	71	63	0	2	34	1.06
46012--46147	58	2.3	59	80	8	136	35	22	2	39	1.69
46046--46238	29	6.5	29	67	17	76	34	24	4	36	1.75
46130--46383	59	4.3	59	74	9	198	32	24	6	36	1.81
57349--57510	61	2.7	58	81	5	184	36	23	1	38	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57472--57581	29	3.8	29	75	11	93	38	26	2	32	1.71
57371--57712	30	11.6	28	71	14	167	35	24	4	36	1.75
57365--57707	58	5.9	56	75	11	201	34	23	4	37	1.74
57462--57728	28	9.2	28	69	15	102	36	24	4	34	1.77
57462--57792	145	2.3	144	79	11	329	34	23	5	36	1.78
57462--57829	146	2.5	144	77	10	347	34	24	4	35	1.77
57753--57870	29	4.1	29	76	9	91	35	27	5	32	1.79
61072--61099	3	9.3	3	100	0	56	0	32	32	35	1.58
67762--67788	5	5.4	5	100	0	54	22	0	0	77	0.76
71054--71087	2	17.0	2	100	0	68	50	0	0	50	1.00
72728--72777	21	2.3	23	83	13	70	64	0	0	36	0.94
72729--72776	22	2.2	22	88	7	71	66	0	0	33	0.92
72722--72770	8	6.4	8	73	17	50	65	0	0	34	0.93
80356--80406	3	17.0	3	100	0	102	0	33	0	66	0.92
81737--81774	19	2.1	19	85	5	51	36	2	5	55	1.37
90432--90456	12	2.1	12	100	0	50	56	0	0	44	0.99
91609--91640	2	16.0	2	100	0	64	50	0	0	50	1.00
99837--99870	7	4.9	7	96	0	50	5	8	55	29	1.54
102506--102579	36	2.1	35	82	7	87	21	4	18	55	1.59
103066--103122	29	2.0	29	86	6	80	52	15	1	29	1.53
103995--104123	60	2.2	60	84	0	159	26	10	8	54	1.64
104294--104327	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104548--104580	16	1.9	18	88	11	52	33	6	0	60	1.21
109860--109903	21	2.0	23	86	8	65	34	9	2	54	1.44
115047--115112	32	2.0	32	85	5	87	50	4	1	43	1.32
116729--116803	38	1.9	38	82	12	91	54	0	0	45	0.99
119863--119890	6	4.7	6	100	0	56	32	67	0	0	0.91
135544--135728	93	2.0	93	100	0	370	32	27	15	25	1.95
140984--141127	76	1.9	76	85	2	200	31	18	14	35	1.91
143641--143750	52	2.1	52	82	0	130	20	1	24	43	1.60
147102--147149	20	2.4	20	75	0	51	47	6	4	41	1.48
147156--147209	20	2.7	20	82	0	72	38	9	1	50	1.45
148098--148156	26	2.2	26	90	3	91	44	10	1	44	1.48
150685--150922	117	2.0	117	96	0	440	22	20	16	39	1.92
161871--161902	6	5.3	6	100	0	64	53	31	0	15	1.43
169674--169719	17	2.6	17	82	3	56	60	0	15	23	1.34
169957--170159	104	2.0	104	87	2	291	29	11	21	37	1.89
172819--172886	31	2.2	31	86	0	91	20	14	14	50	1.78
173040--173064	13	1.9	13	100	0	50	44	0	0	56	0.99
188209--188248	19	2.1	19	90	4	62	7	0	10	82	0.84
193754--193808	16	3.2	16	72	18	56	36	23	29	10	1.89
193814--193926	30	3.8	30	92	0	172	37	17	26	18	1.93
193814--193952	60	2.3	59	85	1	170	38	17	25	19	1.93

Tables:   1

The End!