Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014798.1 Kokia drynarioides strain JFW-HI SEQ_129840, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  141526

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3431--3471
16
2.6
16
84
7
57
0
14
2
82
0.76
5515--5557
6
7.2
6
94
0
77
48
48
0
2
1.14
5508--5557
24
2.1
24
96
0
91
46
48
0
6
1.27
6975--7001
1
27.0
1
100
0
54
100
0
0
0
0.00
9994--10280
29
9.8
31
72
16
193
34
3
25
36
1.73
9936--10271
59
5.8
58
84
5
220
37
3
24
34
1.72
9994--10280
59
4.9
58
86
5
341
34
3
25
36
1.73
9900--10213
117
2.7
112
79
11
294
36
3
26
33
1.72
9994--10241
117
2.1
116
85
7
324
34
3
26
35
1.74
10121--10271
30
5.1
30
76
10
125
33
1
25
39
1.67
11372--11406
12
2.9
12
86
0
52
40
5
0
54
1.24
11375--11440
9
7.1
9
71
6
51
40
3
4
51
1.38
12152--12190
17
2.3
17
91
8
62
46
2
2
48
1.29
13801--14479
75
9.1
75
89
0
912
25
15
29
29
1.95
14658--15548
126
7.0
126
87
2
1130
39
7
12
39
1.72
25297--26049
75
10.0
75
91
1
1114
25
16
29
28
1.97
26228--27113
127
7.0
127
86
2
1095
40
8
12
39
1.72
26228--27113
253
3.5
252
85
3
1109
40
8
12
39
1.72
27739--28007
134
2.0
134
97
0
511
27
18
14
38
1.90
28963--28993
14
2.2
14
100
0
62
45
35
12
6
1.68
36904--36962
31
1.9
31
96
0
109
33
13
25
27
1.93
47237--47266
2
15.0
2
100
0
60
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69581--69624
15
2.9
15
89
0
61
9
6
68
15
1.38
69571--69621
18
2.8
18
84
0
66
9
7
66
15
1.43
72254--72279
2
13.0
2
100
0
52
50
0
0
50
1.00
75934--76045
50
2.3
49
79
17
117
54
0
2
42
1.14
77858--77882
2
12.5
2
100
0
50
52
0
0
48
1.00
93714--93743
15
2.0
15
93
0
51
20
10
16
53
1.71
97609--97647
3
12.3
3
89
5
51
28
0
0
71
0.86
97615--97647
17
2.0
16
94
5
57
27
0
0
72
0.85
97615--97794
63
2.8
66
83
12
225
43
0
2
53
1.15
97615--97792
67
2.8
66
85
9
235
43
0
2
53
1.15
102814--102842
12
2.3
13
94
5
51
79
0
20
0
0.74
103755--103863
50
2.2
50
89
0
173
34
22
22
20
1.96
103755--103931
50
3.5
50
80
0
147
35
18
24
21
1.95
103986--104432
80
5.6
80
90
0
696
31
22
19
26
1.97
103986--104574
160
3.6
160
86
4
743
32
22
17
26
1.96
103986--104574
240
2.4
245
86
5
785
32
22
17
26
1.96
104415--104447
15
2.2
15
100
0
66
39
18
21
21
1.93
104335--104527
95
2.0
95
88
0
287
34
22
17
25
1.95
104255--104574
175
1.8
175
87
2
482
34
22
16
26
1.95
104430--104694
39
6.7
41
70
11
176
34
22
15
27
1.95
105218--105250
17
2.0
16
94
5
57
27
0
0
72
0.85
105218--105402
67
2.9
66
86
10
253
44
0
2
52
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105394--105418
13
1.9
13
100
0
50
68
16
0
16
1.22
110847--110875
14
2.0
15
93
6
51
17
0
0
82
0.66
113045--113071
8
3.4
8
100
0
54
88
0
0
11
0.50
124356--124397
18
2.3
18
87
0
57
57
19
7
16
1.62
133710--133735
4
6.5
4
100
0
52
26
0
0
73
0.84
137520--137566
14
3.5
14
75
21
55
76
6
12
4
1.12
138405--138474
37
1.9
37
86
13
101
54
8
0
37
1.31
139011--139064
17
3.5
16
71
23
53
64
1
9
24
1.32
139000--139079
29
2.7
29
84
11
108
63
1
6
28
1.26
139000--139134
30
4.6
29
76
13
107
64
2
5
26
1.31
139623--139661
12
3.2
12
88
0
60
7
30
38
23
1.83
139628--139669
12
3.5
12
81
12
50
4
28
40
26
1.76

Tables:   1

The End!