Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014799.1 Kokia drynarioides strain JFW-HI SEQ_129841, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3146
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.30


Found at i:2558 original size:6 final size:6

Alignment explanation


    Indices: 2547--2575  Score: 58
    Period size: 6  Copynumber: 4.8  Consensus size: 6

       2537 TTAAAGAATT

                                             
       2547 AGTAGG AGTAGG AGTAGG AGTAGG AGTAG
          1 AGTAGG AGTAGG AGTAGG AGTAGG AGTAG

       2576 TATTTCAATA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.34, C:0.00, G:0.48, T:0.17


Consensus pattern (6 bp):   
AGTAGG

Done.