genome.fa.s14801.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014801.1 Kokia drynarioides strain JFW-HI SEQ_129843, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  399286

Tables:   1   2   

This is table  1  of  2  ( 122 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
786--921	38	3.6	38	81	1	148	33	19	21	26	1.97
7156--7180	2	12.5	2	100	0	50	52	0	48	0	1.00
13932--14071	67	2.1	67	95	0	262	43	9	5	41	1.60
16993--17017	5	5.0	5	100	0	50	0	0	40	60	0.97
21677--21832	77	2.0	77	98	0	303	32	21	12	32	1.91
22868--22907	20	2.1	20	86	9	57	60	7	2	30	1.38
26129--26154	2	13.0	2	100	0	52	50	0	0	50	1.00
28080--28140	19	3.3	19	80	15	67	63	4	0	31	1.15
29207--29325	56	2.1	56	85	3	159	25	21	30	23	1.99
29230--29347	56	2.1	56	81	6	132	24	21	28	25	1.99
29648--29758	40	2.8	40	90	0	168	37	19	18	23	1.94
44370--44403	17	2.0	17	88	0	50	52	2	0	44	1.16
47106--47177	26	2.8	26	75	14	78	40	1	1	56	1.16
47094--47177	23	3.5	23	80	8	80	40	1	1	57	1.14
58910--58936	3	9.0	3	100	0	54	0	0	33	66	0.92
66366--66390	4	6.2	4	100	0	50	24	0	24	52	1.48
67980--68008	15	2.0	15	93	6	51	27	0	3	68	1.05
68943--68999	30	1.9	29	82	3	69	33	3	0	63	1.12
71836--71867	2	16.0	2	100	0	64	50	0	0	50	1.00
75816--75840	6	4.2	6	100	0	50	48	0	0	52	1.00
85521--85626	48	2.3	47	93	3	178	38	4	5	50	1.47
86184--86227	10	4.3	10	86	13	63	68	2	29	0	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102221--102301	31	2.7	31	81	12	89	9	2	16	71	1.23
106401--106461	31	2.0	31	93	6	106	52	18	3	26	1.60
107430--107469	18	2.2	18	86	8	55	57	2	7	32	1.40
112998--113039	15	2.6	16	81	11	59	33	4	11	50	1.60
126965--126997	17	1.9	17	93	0	57	24	15	21	39	1.91
134164--134348	96	1.9	95	82	8	232	36	13	20	30	1.91
134641--135086	88	5.1	87	82	9	523	33	3	28	33	1.75
134641--135086	117	3.8	115	82	7	517	33	3	28	33	1.75
134641--135086	29	15.3	29	80	8	469	33	3	28	33	1.75
137760--137802	15	2.9	15	83	16	63	55	20	0	23	1.43
137760--137798	14	2.7	14	85	14	53	58	23	0	17	1.38
153154--153216	32	2.0	32	93	3	110	52	7	12	26	1.67
155950--156162	115	1.9	114	90	1	345	38	16	12	31	1.87
157684--157790	32	3.4	31	75	6	83	24	2	27	45	1.67
172222--172265	23	1.9	23	85	0	61	47	20	20	11	1.80
172324--172371	24	1.9	26	84	16	66	31	22	0	45	1.53
173819--174162	79	4.4	79	83	2	440	31	24	17	27	1.97
173824--174162	157	2.2	158	89	1	511	30	24	17	27	1.97
173824--174205	157	2.4	157	86	4	477	30	23	17	27	1.97
174139--174360	79	2.8	79	86	2	313	29	24	18	28	1.98
173819--174302	118	4.1	118	73	11	423	30	23	18	27	1.98
174974--175012	17	2.3	17	91	8	62	74	0	2	23	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
176158--176367	60	3.5	59	76	5	181	39	22	5	32	1.76
176158--176367	30	7.0	30	77	3	154	39	22	5	32	1.76
176916--177490	291	2.0	291	96	0	1069	34	15	15	34	1.89
178783--178822	21	1.9	21	94	0	71	17	12	0	70	1.18
180128--180782	78	8.4	77	78	6	624	25	20	30	23	1.98
180179--180680	39	12.9	39	67	12	143	25	18	30	24	1.98
180128--180782	156	4.2	154	81	5	746	25	20	30	23	1.98
180638--180781	39	3.7	38	70	14	89	25	22	29	22	1.99
181137--181472	49	6.9	48	75	7	160	19	30	16	33	1.94
181060--181655	50	12.1	50	74	5	356	19	29	16	34	1.94
181060--181655	99	6.0	99	74	6	359	19	29	16	34	1.94
181066--181605	147	3.7	148	75	8	368	19	29	16	34	1.94
181060--181658	246	2.4	243	81	7	672	19	29	16	34	1.94
182623--182670	7	6.4	7	81	13	60	0	14	2	83	0.74
182611--182679	17	4.2	16	80	14	79	2	15	1	79	0.92
182612--182656	21	2.1	21	84	8	56	2	13	2	82	0.86
182611--182676	24	2.7	24	80	15	73	3	16	1	78	0.95
182611--182682	31	2.2	34	82	9	96	2	16	1	79	0.93
182640--182695	20	3.0	20	82	12	73	7	12	0	80	0.90
183621--183659	10	3.8	10	86	6	51	2	5	5	87	0.75
186595--186657	32	1.9	32	83	6	81	49	14	12	23	1.78
187808--187846	11	3.6	11	86	6	62	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
188618--188684	19	3.5	18	71	26	57	46	0	1	52	1.09
188615--188689	39	1.9	39	91	0	123	45	0	1	53	1.08
194979--195107	26	5.0	26	82	3	152	25	14	17	41	1.88
198331--198365	18	1.9	18	88	0	52	17	28	2	51	1.59
199623--199669	21	2.2	21	84	0	67	51	12	8	27	1.69
201252--201297	22	2.1	22	100	0	92	23	8	32	34	1.86
207977--208034	18	3.2	18	78	9	64	29	10	15	44	1.79
221180--221239	30	2.0	31	90	3	95	43	0	38	18	1.50
221427--221469	9	4.8	9	94	0	68	25	11	16	46	1.80
227175--227207	16	2.1	16	100	0	66	54	0	6	39	1.25
236019--236046	11	2.5	11	100	0	56	57	0	7	35	1.26
242634--242744	43	2.6	42	72	10	100	54	15	17	13	1.72
244558--244681	65	1.9	65	88	3	187	17	16	12	52	1.75
246348--246384	18	2.1	18	89	0	56	51	13	8	27	1.69
255038--255090	24	2.1	24	82	6	61	35	0	0	64	0.94
257662--257692	10	3.2	10	90	9	55	64	0	0	35	0.94
270403--270427	6	4.2	6	100	0	50	48	16	16	20	1.82
270818--271062	115	2.1	115	92	0	400	22	23	23	29	1.99
283554--283589	17	2.2	17	90	5	56	19	13	11	55	1.68
290169--290633	158	3.0	157	81	9	571	24	23	22	29	1.99
290331--290619	145	2.0	145	89	1	445	22	24	24	29	1.99
296860--296898	19	2.0	21	85	10	55	25	0	5	69	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301614--301699	42	2.0	42	100	0	172	23	6	24	45	1.77
308566--308616	24	2.1	24	88	0	75	23	11	9	54	1.66
326132--326166	13	2.7	13	90	0	52	2	31	0	65	1.07
326080--326184	52	2.0	51	87	5	149	14	27	2	55	1.53
327672--327726	27	2.0	27	89	0	83	32	25	9	32	1.87
329704--329755	27	2.0	26	88	3	77	21	36	0	42	1.53
331448--331554	18	6.2	18	67	25	52	30	0	0	69	0.89
331443--331508	14	4.4	14	80	14	69	28	0	0	71	0.87
331450--331515	29	2.3	28	76	10	71	30	0	0	69	0.88
331481--331542	17	3.4	18	81	18	76	35	0	0	64	0.94
331484--331547	18	3.4	20	75	12	73	35	0	0	64	0.94
332295--332324	13	2.4	12	94	5	51	43	0	3	53	1.17
333564--333628	30	2.2	30	94	2	114	58	13	3	24	1.50
334720--334765	21	2.2	21	92	0	74	47	23	0	28	1.52
336474--336530	26	2.2	26	96	0	105	15	22	19	42	1.89
336474--336539	26	2.5	26	92	0	96	16	21	18	43	1.87
339024--339064	18	2.3	19	83	8	50	53	4	24	17	1.63
340073--340118	16	2.9	16	84	12	60	47	6	0	45	1.28
341706--341864	85	1.9	85	85	0	219	24	18	16	40	1.91
345516--345619	20	5.2	20	82	1	136	13	33	21	31	1.92
349891--350035	33	4.4	33	84	5	177	28	0	46	24	1.57
349891--350104	66	3.2	66	77	8	195	28	1	46	23	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349893--350110	99	2.2	98	80	6	226	28	1	46	22	1.62
349942--350110	33	5.1	33	74	12	96	28	2	46	22	1.64
350143--350274	51	2.6	51	85	0	192	28	10	25	34	1.89
351463--351592	52	2.5	52	85	6	165	34	23	13	28	1.93
361400--361443	22	2.0	22	86	0	61	38	4	0	56	1.20
364223--364465	120	2.0	120	84	1	317	27	16	23	32	1.96
364223--364465	40	6.1	40	80	0	245	27	16	23	32	1.96
364270--364504	120	2.0	120	83	3	303	26	16	24	32	1.96
365545--365576	15	2.1	15	100	0	64	34	12	21	31	1.91
371718--371774	7	8.1	7	76	7	53	26	0	28	45	1.54

Tables:   1   2