genome.fa.s14804.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014804.1 Kokia drynarioides strain JFW-HI SEQ_129846, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  321267

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17879--17952	38	1.9	38	88	0	112	27	18	22	31	1.98
28112--28157	24	1.9	24	100	0	92	36	8	10	43	1.71
34712--34786	30	2.5	30	84	0	96	28	17	24	30	1.97
34729--34899	66	2.6	66	83	3	200	28	17	26	27	1.98
43293--43616	166	2.0	166	97	0	612	32	23	16	28	1.96
43808--44399	79	7.5	79	79	5	574	33	12	10	43	1.77
43804--44401	158	3.8	158	83	5	710	34	12	10	43	1.76
43859--44399	237	2.3	236	84	3	701	33	12	10	43	1.77
44380--44422	22	2.0	22	100	0	86	18	13	13	53	1.73
66208--66280	35	2.1	35	82	5	85	31	24	16	27	1.96
66514--66540	2	13.5	2	100	0	54	51	0	0	48	1.00
71641--71757	38	3.1	38	81	9	148	31	19	18	29	1.96
73508--73538	16	1.9	16	93	0	53	61	0	16	22	1.34
74990--75029	18	2.3	18	91	4	64	0	17	0	82	0.67
75590--75623	17	2.0	17	88	0	50	41	11	23	23	1.87
77158--77191	15	2.2	15	89	5	50	44	14	8	32	1.76
77760--77790	16	1.9	16	93	0	53	61	0	16	22	1.34
86967--87033	33	2.0	33	97	0	125	32	14	26	25	1.95
102175--102225	20	2.6	20	84	3	59	25	3	23	47	1.69
102175--102213	20	2.0	20	94	0	69	25	5	23	46	1.73
102464--102512	20	2.4	20	77	16	55	24	2	6	67	1.24
115805--115839	18	1.9	18	94	0	61	17	22	8	51	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120106--120130	11	2.3	11	100	0	50	36	28	8	28	1.85
122001--122025	11	2.3	11	100	0	50	48	0	8	44	1.32
126828--126863	18	2.0	18	94	0	63	27	13	19	38	1.90
126896--126978	42	2.0	42	100	0	166	31	14	14	39	1.86
129416--129462	19	2.4	20	78	3	51	72	6	6	14	1.25
146125--146180	3	18.7	3	79	20	64	62	1	35	0	1.06
155518--155556	15	2.5	16	88	12	55	15	10	5	69	1.34
158483--158563	40	2.0	40	95	0	144	34	33	6	25	1.81
173199--173241	17	2.5	17	84	0	50	53	18	11	16	1.72
187535--187564	15	2.0	15	93	0	51	43	6	23	26	1.78
194952--194976	10	2.5	10	100	0	50	24	12	0	64	1.27
195483--195530	21	2.1	22	81	11	53	47	2	0	50	1.12
195590--195633	22	2.0	22	82	8	54	20	40	4	34	1.73
199398--199461	31	2.1	31	100	0	128	59	6	9	25	1.52
204606--204640	14	2.6	13	86	8	52	80	0	17	2	0.84
204603--204649	21	2.3	20	85	3	58	76	0	21	2	0.89
213594--213759	58	2.9	58	83	8	214	43	1	1	52	1.22
213916--213969	16	3.4	16	84	5	65	29	25	5	38	1.79
221612--221650	12	3.0	12	88	11	51	0	38	0	61	0.96
236228--236269	17	2.4	18	84	4	59	4	45	0	50	1.23
256083--256148	19	3.5	19	91	0	96	37	22	4	34	1.75
256106--256141	11	3.5	11	78	21	51	41	22	5	30	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
256454--256567	45	2.5	45	81	2	131	24	24	21	29	1.99
259412--259451	15	2.7	15	84	0	62	5	45	0	50	1.23
262754--262797	23	2.0	23	86	4	63	54	13	9	22	1.67
264681--264720	19	2.1	19	85	0	53	62	5	5	27	1.37
274466--274513	25	2.0	24	84	12	62	37	2	4	56	1.30
276799--276861	19	3.3	19	89	8	101	39	1	23	34	1.65
279513--279601	37	2.4	38	84	7	119	48	4	0	47	1.22
280554--280592	21	1.9	20	94	5	69	38	25	15	20	1.92
284361--284561	102	2.0	101	93	2	341	31	12	15	40	1.84
287477--287522	17	2.7	17	81	15	51	8	30	4	56	1.49
292511--292556	22	2.1	22	84	8	58	50	0	30	19	1.48
296005--296042	17	2.2	18	85	4	51	31	0	5	63	1.17
299191--299260	34	2.1	34	86	5	97	27	8	5	58	1.50
303033--303100	36	1.9	35	85	14	95	54	1	1	42	1.18
303135--303180	17	2.8	16	81	12	56	69	0	0	30	0.89
312373--312424	20	2.6	21	73	11	56	42	19	3	34	1.69
313270--313294	2	12.5	2	100	0	50	48	0	0	52	1.00

Tables:   1

The End!