Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014812.1 Kokia drynarioides strain JFW-HI SEQ_129854, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18375
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.36

Warning! 100 characters in sequence are not A, C, G, or T


Found at i:13285 original size:58 final size:58

Alignment explanation


    Indices: 13213--13365  Score: 288
    Period size: 58  Copynumber: 2.6  Consensus size: 58

      13203 GTCACCAAAT

                     *              *                                 
      13213 TTACAACTAAGAGATGAAAGTGACTCTACTGGAATATTATATGTGTTAATAATCCAGC
          1 TTACAACTAGGAGATGAAAGTGACCCTACTGGAATATTATATGTGTTAATAATCCAGC

                                                                      
      13271 TTACAACTAGGAGATGAAAGTGACCCTACTGGAATATTATATGTGTTAATAATCCAGC
          1 TTACAACTAGGAGATGAAAGTGACCCTACTGGAATATTATATGTGTTAATAATCCAGC

                                                 
      13329 TTACAACTAGGAGATGAAAGTGACCCTACTGGAATAT
          1 TTACAACTAGGAGATGAAAGTGACCCTACTGGAATAT

      13366 AAGATCATGT


Statistics
Matches: 93,  Mismatches: 2, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  58   93  1.00

ACGTcount: A:0.37, C:0.15, G:0.19, T:0.29


Consensus pattern (58 bp):   
TTACAACTAGGAGATGAAAGTGACCCTACTGGAATATTATATGTGTTAATAATCCAGC
Done.