genome.fa.s14813.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014813.1 Kokia drynarioides strain JFW-HI SEQ_129855, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  228131

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26141--26564	23	18.5	23	87	1	557	46	14	4	33	1.65
26954--27178	36	6.2	36	86	1	290	38	24	7	30	1.82
26954--27184	72	3.2	72	88	0	336	38	24	6	30	1.82
30913--30950	17	2.2	17	86	9	51	60	7	0	31	1.25
39502--39534	15	2.3	15	89	5	50	21	12	6	60	1.53
41366--41400	18	1.9	18	88	0	52	48	0	45	5	1.26
43660--44125	81	5.8	81	87	2	616	24	15	26	32	1.96
43659--44125	243	1.9	243	87	4	683	24	15	26	32	1.96
44404--44909	49	10.3	49	74	5	330	21	21	16	40	1.91
44404--44988	147	4.0	145	76	5	462	20	22	16	40	1.91
44429--44990	98	5.7	98	77	2	464	20	22	16	39	1.92
46037--46103	6	11.8	6	78	12	63	2	14	0	82	0.79
46035--46103	17	4.2	16	79	17	79	2	14	0	82	0.78
70166--70238	17	4.3	17	67	0	56	24	21	8	45	1.79
74045--74090	22	2.1	22	100	0	92	41	21	8	28	1.83
75672--75706	18	1.9	18	88	0	52	62	5	0	31	1.18
76391--76445	24	2.3	25	84	6	69	50	10	3	34	1.55
82374--82711	38	8.9	38	82	0	354	34	28	20	16	1.94
83252--83288	18	2.1	18	94	0	65	51	18	5	24	1.67
100202--100247	4	11.8	4	95	4	85	23	0	26	50	1.50
103857--104187	165	2.0	165	98	0	644	50	13	6	29	1.67
105110--105139	14	2.2	14	94	5	53	30	23	10	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110282--110624	172	2.0	173	94	0	607	27	20	8	43	1.81
128352--128391	12	3.3	12	92	0	62	0	32	0	67	0.91
136970--137048	26	3.0	26	66	14	72	29	17	20	32	1.95
136971--137091	52	2.3	52	85	0	161	28	18	21	32	1.96
142332--142365	15	2.3	15	89	0	50	14	11	5	67	1.39
148600--148657	24	2.3	26	76	8	66	15	5	6	72	1.24
150401--150451	18	2.7	18	84	9	66	70	0	27	1	0.98
150401--150451	9	5.3	9	79	11	57	70	0	27	1	0.98
153079--153133	24	2.2	24	83	3	65	29	16	9	45	1.78
156575--156607	9	3.7	9	100	0	66	24	9	12	54	1.66
156970--156998	11	2.5	12	94	5	51	31	6	34	27	1.83
165485--165552	31	2.4	27	76	11	73	67	0	0	32	0.91
165949--165982	5	6.8	5	86	0	50	0	17	0	82	0.67
165955--165983	15	1.9	15	100	0	58	0	13	0	86	0.58
167090--167151	29	2.1	29	85	5	81	61	8	3	27	1.40
167826--168057	117	2.0	117	94	0	412	43	10	12	32	1.78
176115--176160	21	2.2	21	88	0	65	23	13	28	34	1.92
176128--176168	21	2.0	21	85	0	55	29	12	26	31	1.92
178554--178608	25	2.2	25	86	0	74	20	12	32	34	1.90
185390--185979	198	3.0	197	91	1	957	29	15	29	25	1.96
192721--192764	3	14.7	3	100	0	88	34	0	0	65	0.93
195746--195787	20	2.1	21	82	8	52	64	7	0	28	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
196848--196894	24	1.9	25	83	12	62	68	0	12	19	1.21
206939--206985	15	3.2	15	77	17	53	70	0	8	21	1.14
208345--208378	16	2.1	17	88	5	52	61	0	8	29	1.26
209756--209827	30	2.4	31	88	6	103	47	19	13	19	1.83
210623--210702	30	2.6	31	80	7	94	23	11	20	45	1.83
217571--217630	23	2.6	23	83	0	84	60	11	13	15	1.60
219195--219295	32	3.2	32	61	20	75	38	21	2	36	1.69
219183--219307	64	2.0	64	100	0	250	38	21	3	36	1.70
223228--223797	283	2.0	282	92	0	942	35	13	25	25	1.93
225226--225329	36	2.9	36	82	5	131	20	24	17	38	1.93
227899--227960	22	2.8	22	87	2	61	11	3	16	69	1.31
227910--227960	23	2.3	22	96	3	93	7	3	17	70	1.27
227910--227974	22	2.8	23	88	9	80	7	4	18	69	1.31
227910--227987	22	3.5	22	80	13	79	8	3	19	67	1.33
227997--228093	12	8.3	12	76	6	65	7	5	18	69	1.31
227968--228107	45	3.1	42	76	13	111	9	5	17	68	1.34
228003--228093	24	4.0	23	75	8	87	6	5	18	69	1.31
228038--228108	20	3.2	21	75	16	72	7	2	19	70	1.23
228008--228107	45	2.2	45	85	1	130	8	5	19	68	1.34

Tables:   1

The End!