genome.fa.s14815.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014815.1 Kokia drynarioides strain JFW-HI SEQ_129857, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90506

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
375--415	20	2.0	22	85	9	59	56	4	19	19	1.60
1178--1281	29	3.6	28	78	7	109	36	22	1	39	1.65
1189--1323	29	4.6	28	76	12	112	36	23	2	37	1.68
1210--1621	29	14.0	30	73	12	227	32	25	4	38	1.75
1248--1621	30	12.7	30	74	10	247	32	25	4	37	1.76
1239--1621	59	6.5	59	77	9	268	32	25	4	37	1.75
1239--1682	59	7.5	58	76	11	222	31	25	5	37	1.78
5999--6039	22	1.9	21	85	5	55	43	7	34	14	1.73
13887--14845	183	4.9	188	81	9	940	34	19	23	22	1.97
14469--14898	194	2.2	197	85	2	560	34	17	24	23	1.96
15273--15369	6	16.3	6	70	14	67	43	4	3	49	1.37
15291--15359	35	2.0	35	83	11	88	42	4	2	50	1.37
15262--15354	18	5.4	17	73	8	71	40	3	5	50	1.41
16830--17252	58	7.2	58	75	10	301	32	26	3	36	1.74
16843--17250	30	13.9	29	73	10	246	33	25	3	37	1.72
17087--17250	87	1.9	87	81	11	201	35	25	3	35	1.72
17143--17392	59	4.3	58	74	10	165	30	24	8	36	1.85
17349--17410	28	2.2	28	91	5	99	30	32	12	24	1.93
18304--18351	24	1.9	26	84	16	66	45	0	22	31	1.53
18434--18486	23	2.2	23	83	6	61	13	24	22	39	1.90
18446--18491	23	2.0	23	86	0	65	13	23	21	41	1.88
33285--33314	6	5.0	6	91	0	51	16	3	0	80	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35283--35357	31	2.5	29	87	8	123	50	0	0	49	1.00
35283--35365	20	4.2	20	68	28	52	50	0	0	49	1.00
37264--37455	30	6.5	29	80	8	194	39	20	2	38	1.66
37252--37455	29	6.9	29	80	11	218	38	21	2	37	1.67
37252--37455	59	3.4	59	85	7	261	38	21	2	37	1.67
37260--37478	59	3.7	58	81	13	243	37	21	2	37	1.68
37629--37660	2	16.0	2	100	0	64	50	0	0	50	1.00
39150--39203	16	3.6	15	73	16	58	44	1	0	53	1.11
39144--39218	29	2.6	28	91	2	123	49	1	0	49	1.09
39588--39613	2	13.0	2	100	0	52	50	50	0	0	1.00
46348--46373	2	13.0	2	100	0	52	50	50	0	0	1.00
50566--50617	9	6.6	9	72	28	55	53	0	0	46	1.00
50558--50626	20	3.6	20	73	23	67	52	0	1	46	1.09
52137--52189	20	2.7	20	77	8	56	26	11	24	37	1.89
52406--52457	20	2.6	20	84	0	68	28	9	30	30	1.89
55268--55316	20	2.4	21	80	6	57	28	10	22	38	1.87
55696--55762	20	3.3	20	69	22	68	52	0	0	47	1.00
65769--65798	3	10.0	3	92	0	51	63	33	0	3	1.11
66895--66942	6	7.5	6	82	13	51	31	45	0	22	1.53
66895--66967	21	3.5	21	77	3	58	27	43	1	27	1.63
66895--66953	27	2.2	27	81	6	66	30	45	1	22	1.62
66951--66991	6	6.8	6	100	0	82	17	34	0	48	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80651--80854	39	5.3	39	77	7	182	25	19	19	35	1.95
80677--80858	78	2.4	77	81	4	206	25	19	20	35	1.96
81339--81391	21	2.5	21	81	6	63	32	24	11	32	1.91
81814--81865	21	2.5	21	81	12	63	28	28	11	30	1.92
88275--88343	29	2.3	30	80	11	81	24	21	8	44	1.80
89659--89726	21	3.3	20	75	15	68	58	1	4	35	1.27

Tables:   1

The End!