genome.fa.s14816.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014816.1 Kokia drynarioides strain JFW-HI SEQ_129858, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77863

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3323--3424	37	2.7	40	76	19	105	41	1	3	52	1.31
3376--3433	31	1.9	29	82	6	71	39	3	5	51	1.41
4103--4147	21	2.0	23	87	8	67	13	28	22	35	1.92
5639--5754	24	4.8	24	78	0	106	36	16	24	23	1.94
5639--5755	48	2.4	48	85	0	162	35	16	23	23	1.94
5811--5871	24	2.5	24	81	0	59	42	9	14	32	1.79
12623--12808	24	7.8	24	83	4	214	34	16	29	19	1.94
25570--25971	30	13.6	29	75	8	301	34	25	2	37	1.69
25886--25971	31	2.9	29	83	8	102	34	31	2	31	1.71
31119--31189	10	6.8	11	72	18	53	80	0	12	7	0.90
31115--31190	31	2.5	31	87	8	102	78	0	14	6	0.93
31130--31188	20	2.9	19	79	16	66	79	0	15	5	0.89
31116--31195	21	3.7	22	73	20	53	78	0	15	6	0.93
31136--31192	25	2.4	25	82	8	75	78	0	15	5	0.91
32095--32442	97	3.6	97	82	4	405	31	16	30	20	1.95
32096--32447	48	7.2	47	69	8	204	32	16	30	20	1.95
32728--32842	39	2.9	38	83	10	99	27	26	19	26	1.99
32755--32842	39	2.3	38	88	5	124	25	23	23	27	2.00
32853--33399	210	2.6	208	85	0	743	37	16	22	23	1.94
33240--33447	48	4.6	45	68	16	135	35	15	23	25	1.94
33239--33397	85	1.9	85	85	5	223	34	15	24	25	1.94
33240--33532	133	2.2	133	87	2	410	34	15	24	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33373--33539	85	2.0	85	83	4	212	35	16	23	24	1.94
33028--33742	342	2.1	344	86	1	988	35	16	23	24	1.95
33371--33900	210	2.5	208	88	3	769	35	17	22	24	1.95
33837--33911	37	2.0	37	89	5	116	34	18	20	26	1.95
33716--34065	161	2.2	161	90	2	558	35	17	22	25	1.95
33515--34204	371	1.9	370	90	1	1105	36	16	22	24	1.94
34340--34463	48	2.6	48	85	5	169	33	13	26	26	1.94
34390--34558	86	2.0	85	84	3	223	36	15	23	24	1.93
35618--35647	10	2.9	10	95	5	51	86	0	0	13	0.57
36245--36670	29	14.5	29	77	6	275	33	24	4	37	1.75
36264--36606	58	5.8	60	80	4	326	34	23	3	38	1.72
38809--38893	3	30.0	3	79	11	99	65	2	30	1	1.12
38811--38898	25	3.7	23	78	15	88	67	2	29	1	1.10
38809--38896	28	3.1	27	81	15	99	65	2	30	1	1.12
50465--50516	23	2.3	23	100	0	104	15	3	40	40	1.65
53672--53706	6	5.7	6	89	3	52	14	0	5	80	0.89
55023--55050	2	14.0	2	100	0	56	50	0	0	50	1.00
55231--55262	13	2.5	13	95	5	57	28	0	12	59	1.34
61555--61597	22	2.0	22	86	4	61	69	0	0	30	0.88
64108--64532	212	2.0	212	95	1	773	27	17	9	45	1.79
73648--73679	16	2.0	16	93	0	55	43	15	12	28	1.83

Tables:   1

The End!