Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001482.1 Kokia drynarioides strain JFW-HI SEQ_113015, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9174
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30


Found at i:2404 original size:69 final size:69

Alignment explanation


    Indices: 2322--2463  Score: 284
    Period size: 69  Copynumber: 2.1  Consensus size: 69

       2312 GGGTGGCCGA

                                                                             
       2322 CGCCCCAAGCCCCTAACTCAAACTATCCGAATGCCATCTACCACCACCACCACCAACCTCCTCCT
          1 CGCCCCAAGCCCCTAACTCAAACTATCCGAATGCCATCTACCACCACCACCACCAACCTCCTCCT

                
       2387 CCGG
         66 CCGG

                                                                             
       2391 CGCCCCAAGCCCCTAACTCAAACTATCCGAATGCCATCTACCACCACCACCACCAACCTCCTCCT
          1 CGCCCCAAGCCCCTAACTCAAACTATCCGAATGCCATCTACCACCACCACCACCAACCTCCTCCT

                
       2456 CCGG
         66 CCGG

                
       2460 CGCC
          1 CGCC

       2464 AAGTTATCCT


Statistics
Matches: 73,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  69   73  1.00

ACGTcount: A:0.25, C:0.51, G:0.09, T:0.14


Consensus pattern (69 bp):   
CGCCCCAAGCCCCTAACTCAAACTATCCGAATGCCATCTACCACCACCACCACCAACCTCCTCCT
CCGG

Found at i:8130 original size:48 final size:48

Alignment explanation


    Indices: 8059--8160  Score: 195
    Period size: 48  Copynumber: 2.1  Consensus size: 48

       8049 GTTGTATAAA

                                                            
       8059 AAGAACTATTATAGGTCCCTCTTAATCTGAACATGAAACAGGATAGGG
          1 AAGAACTATTATAGGTCCCTCTTAATCTGAACATGAAACAGGATAGGG

                                                *           
       8107 AAGAACTATTATAGGTCCCTCTTAATCTGAACATGATACAGGATAGGG
          1 AAGAACTATTATAGGTCCCTCTTAATCTGAACATGAAACAGGATAGGG

                  
       8155 AAGAAC
          1 AAGAAC

       8161 AGAACGATTA


Statistics
Matches: 53,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  48   53  1.00

ACGTcount: A:0.38, C:0.17, G:0.21, T:0.25


Consensus pattern (48 bp):   
AAGAACTATTATAGGTCCCTCTTAATCTGAACATGAAACAGGATAGGG
Done.