genome.fa.s14820.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014820.1 Kokia drynarioides strain JFW-HI SEQ_129862, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  421648

Tables:   1   2   

This is table  1  of  2  ( 128 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--37	2	18.5	2	100	0	74	51	0	0	48	1.00
4845--4917	36	2.0	36	84	10	96	34	19	24	21	1.96
12200--12243	18	2.4	18	80	3	52	59	6	2	31	1.36
13485--13509	13	1.9	13	100	0	50	12	0	0	88	0.53
16010--16077	23	3.0	23	77	14	77	45	0	0	54	0.99
16073--16142	22	3.1	22	71	8	70	47	0	0	52	1.00
20736--20767	14	2.2	15	94	5	57	46	0	0	53	1.00
20754--20795	18	2.2	19	91	8	68	38	0	4	57	1.20
20733--20809	30	2.4	31	80	10	84	35	0	3	61	1.15
20706--20809	34	3.2	33	78	10	90	34	0	4	60	1.18
22884--22964	26	3.0	26	70	16	83	39	4	22	33	1.75
33987--34051	28	2.2	30	83	5	80	50	1	3	44	1.26
34654--34699	11	4.2	11	82	0	56	15	2	10	71	1.23
41514--41602	29	3.0	28	68	31	76	51	2	2	43	1.26
48135--48179	23	1.9	24	82	13	58	26	8	26	37	1.86
50009--50072	12	5.3	12	86	0	92	21	10	45	21	1.83
50065--50545	69	7.1	68	75	12	310	30	14	32	22	1.94
50151--50481	138	2.3	140	80	7	364	31	14	32	22	1.93
50415--50618	66	3.1	66	77	8	218	30	12	33	23	1.91
50636--50902	69	3.9	69	90	2	428	30	15	31	22	1.95
55282--55367	42	2.0	45	88	6	133	59	2	1	37	1.18
57261--57306	24	1.9	24	81	0	56	6	36	19	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57394--57502	54	2.0	54	87	3	157	7	34	19	38	1.79
57250--57517	66	4.1	66	69	10	181	6	34	21	37	1.79
59781--59814	16	2.1	16	88	0	50	35	8	14	41	1.77
60766--60808	19	2.2	20	84	12	54	60	13	6	18	1.55
65478--65681	97	2.1	98	88	0	302	38	9	17	33	1.83
68459--68494	16	2.2	16	95	0	63	61	0	0	38	0.96
81264--81312	24	2.0	24	84	0	62	44	14	16	24	1.84
81353--81396	15	2.6	17	79	17	56	52	2	0	45	1.13
92880--93000	27	4.4	27	80	3	116	42	5	9	42	1.60
92880--93000	55	2.2	54	82	4	152	42	5	9	42	1.60
93422--93452	6	5.2	6	96	0	53	54	12	0	32	1.38
93979--94008	14	2.2	13	94	5	51	76	0	13	10	1.01
94314--94401	45	2.0	44	88	2	131	22	0	32	44	1.53
94981--95022	18	2.5	17	85	11	59	28	0	0	71	0.86
107597--107639	18	2.4	18	88	7	61	51	0	0	48	1.00
119943--119982	16	2.4	16	88	12	55	55	10	0	35	1.34
131345--131369	2	12.5	2	100	0	50	0	52	0	48	1.00
141742--141996	60	4.3	58	78	9	221	32	18	12	36	1.88
141895--142207	105	3.0	104	82	8	356	31	18	12	38	1.87
143179--143400	29	7.5	30	76	14	178	34	4	28	32	1.79
143227--143400	29	5.9	30	78	12	191	33	5	29	32	1.79
143233--143400	60	2.8	58	84	7	221	34	4	28	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144547--144571	13	1.9	13	100	0	50	64	0	16	20	1.30
145193--145280	17	5.2	16	80	5	95	53	2	0	44	1.13
145200--145280	6	14.2	6	73	18	66	53	2	0	44	1.14
145193--145244	10	4.8	10	82	17	68	53	0	0	46	1.00
145193--145280	34	2.6	33	85	10	108	53	2	0	44	1.13
146064--146118	27	2.1	26	93	3	92	38	1	1	58	1.20
146080--146123	21	2.1	21	84	12	56	36	2	0	61	1.09
161073--161140	26	2.9	22	73	23	75	25	29	22	23	1.99
167355--167463	37	2.9	37	83	2	130	12	17	31	38	1.87
172844--172921	39	2.0	41	87	5	115	66	7	1	24	1.25
173737--173772	17	2.2	16	90	9	56	27	0	0	72	0.85
179719--179770	27	2.0	26	92	3	86	21	38	0	40	1.53
193547--193665	23	5.2	23	81	6	127	12	24	23	39	1.89
193630--193704	39	1.9	39	88	0	114	13	22	20	44	1.86
193669--193759	23	3.9	23	77	17	98	12	23	18	46	1.82
199232--199314	42	2.0	41	97	0	148	68	4	15	9	1.33
205782--205806	12	2.1	12	100	0	50	24	24	8	44	1.80
211600--211652	26	2.0	26	88	0	79	41	1	0	56	1.10
212927--213093	90	1.9	89	82	8	214	37	16	8	37	1.79
215253--215286	18	1.9	18	88	5	52	32	8	11	47	1.71
215509--215576	24	2.8	24	80	8	84	27	8	7	55	1.57
224145--224199	27	2.0	27	100	0	110	36	18	14	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
237034--237092	25	2.4	25	97	2	111	5	20	18	55	1.61
239367--239434	27	2.5	27	85	4	93	29	35	17	17	1.93
240520--240558	18	2.1	19	86	13	55	30	0	7	61	1.24
253901--253948	19	2.5	19	83	6	62	68	2	10	18	1.28
254544--254607	20	3.2	20	74	10	69	29	0	1	68	0.99
254564--254607	21	2.0	23	87	12	67	29	0	0	70	0.88
284074--284109	12	3.0	12	95	0	63	77	0	22	0	0.76
286455--286488	9	3.8	9	100	0	68	55	0	0	44	0.99
287808--287869	32	1.9	32	96	0	115	32	16	27	24	1.96
288909--289255	66	5.3	66	92	0	577	39	9	33	17	1.82
288847--289255	198	2.1	198	88	1	597	39	10	34	16	1.83
294132--294201	23	3.0	23	80	2	86	42	18	10	28	1.82
295484--295526	18	2.3	19	80	8	52	51	0	0	48	1.00
298239--298268	3	10.0	3	100	0	60	33	0	0	66	0.92
303171--303240	30	2.3	30	100	0	140	21	34	15	28	1.94
306376--306442	28	2.7	24	75	18	64	34	4	13	47	1.63
306378--306434	28	2.0	28	96	0	105	38	3	15	42	1.65
335409--335442	2	16.5	2	93	6	59	2	0	50	47	1.16
337578--337619	8	5.0	8	97	2	66	88	0	0	11	0.53
337578--337617	9	4.6	9	93	6	73	90	0	0	10	0.47
337578--337617	17	2.3	18	95	4	73	90	0	0	10	0.47
337728--337816	20	4.8	18	72	18	67	55	1	4	39	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337716--337817	18	5.5	18	71	21	68	54	0	3	40	1.25
338182--338237	20	2.8	21	81	7	73	25	0	10	64	1.26
340771--340817	18	2.6	17	84	15	60	74	6	6	12	1.20
340800--340867	23	2.9	23	77	14	77	66	0	11	22	1.24
340800--340865	24	2.8	24	82	11	75	65	0	12	22	1.26
340823--340877	24	2.2	26	78	12	62	63	0	14	21	1.30
342209--342323	23	5.0	22	80	13	92	41	21	25	11	1.86
342261--342359	23	4.2	23	83	11	112	45	21	22	11	1.83
342256--342359	48	2.2	46	81	6	120	46	21	22	10	1.81
342234--342358	23	5.2	23	79	13	94	44	20	24	11	1.84
344279--344308	11	2.6	12	94	5	53	26	0	0	73	0.84
345698--345722	13	1.9	13	100	0	50	56	8	4	32	1.47
345714--345754	22	1.9	21	90	5	64	43	0	4	51	1.23
346315--346339	2	12.5	2	100	0	50	52	0	0	48	1.00
348733--348778	22	2.1	22	84	8	58	34	13	4	47	1.62
352782--352809	2	14.0	2	100	0	56	50	0	0	50	1.00
354255--354292	11	3.7	11	80	20	55	26	0	0	73	0.83
354255--354294	19	2.1	19	100	0	80	27	0	0	72	0.85
394378--394411	17	2.0	17	88	11	52	44	11	5	38	1.65
400021--400071	24	2.1	24	88	0	75	35	1	0	62	1.06
400435--400466	17	1.9	17	93	6	57	71	0	0	28	0.86
400410--400462	25	2.1	25	86	6	72	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400700--401011	161	2.0	158	85	5	432	35	14	7	41	1.75
401093--401167	29	2.6	29	89	6	109	49	1	0	49	1.09
401129--401170	20	2.0	22	90	9	70	52	0	0	47	1.00
401120--401176	20	3.0	20	74	23	59	47	1	0	50	1.11
405833--405858	2	13.0	2	100	0	52	50	0	0	50	1.00
407440--407559	55	2.2	55	84	0	159	47	15	10	26	1.77
407576--407604	2	15.0	2	92	7	51	51	0	0	48	1.00
408884--408939	26	2.3	22	80	17	58	46	1	5	46	1.36
409917--409954	18	2.1	18	85	9	51	28	10	10	50	1.70
421163--421262	39	2.6	39	82	3	130	18	8	43	31	1.78

Tables:   1   2