genome.fa.s14823.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014823.1 Kokia drynarioides strain JFW-HI SEQ_129865, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122613

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
685--1506	347	2.4	341	85	7	1090	32	10	11	45	1.75
1748--2035	41	6.9	41	83	5	258	32	18	18	30	1.94
1661--2060	82	4.7	81	78	8	345	31	20	17	30	1.95
1608--2035	123	3.3	127	79	9	329	32	19	17	29	1.95
1602--2249	46	14.9	46	81	6	489	31	21	18	28	1.97
4889--4929	7	6.1	7	83	11	59	43	0	0	56	0.99
4895--4931	12	3.2	12	81	18	51	45	0	0	54	1.00
5669--5780	17	6.5	17	78	9	129	55	2	0	41	1.20
5669--5780	35	3.3	34	87	5	145	55	2	0	41	1.20
5669--5748	6	13.0	6	71	19	58	55	2	1	41	1.21
10440--10516	29	2.6	30	77	4	84	46	1	19	32	1.58
11567--11624	23	2.4	25	75	18	61	39	5	1	53	1.33
11583--11625	23	1.9	22	90	4	68	46	2	2	48	1.27
11610--11677	31	2.2	31	84	5	84	36	5	5	51	1.50
12372--12471	6	17.3	6	72	19	79	54	2	1	43	1.18
12372--12471	17	5.8	17	84	6	139	54	2	1	43	1.18
12741--12788	17	2.8	17	87	0	69	54	2	2	41	1.24
15755--15823	15	4.8	14	72	11	50	36	13	0	50	1.41
16268--16297	8	3.8	8	95	0	51	16	0	0	83	0.65
18499--18615	20	5.7	21	73	14	82	42	6	11	38	1.69
18525--18638	41	2.7	42	79	4	106	41	5	13	40	1.66
18566--18645	42	1.9	42	86	0	115	41	6	12	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18545--18684	20	6.8	21	79	8	117	39	5	13	41	1.68
26186--26247	31	2.0	31	87	0	88	32	17	14	35	1.90
26945--27014	30	2.3	30	73	4	70	41	10	11	37	1.75
28641--28683	19	2.2	20	84	12	54	55	6	6	30	1.53
28640--28684	20	2.2	21	77	18	51	57	6	6	28	1.50
38895--38970	28	2.7	28	91	0	125	48	5	3	42	1.44
38887--38984	28	3.5	28	84	1	117	47	8	3	40	1.49
39666--39729	26	2.5	26	94	0	110	29	15	10	43	1.81
50467--50492	3	8.7	3	100	0	52	30	0	0	69	0.89
58191--58223	17	1.9	18	88	11	52	42	12	0	45	1.41
63135--63187	27	1.9	28	92	3	90	50	3	5	39	1.44
65257--65316	29	2.1	29	90	0	93	36	21	8	33	1.84
65286--65354	36	1.9	36	84	0	93	37	24	7	30	1.83
72339--72396	27	2.2	25	75	6	62	29	15	5	50	1.66
72547--72571	11	2.3	11	100	0	50	68	8	0	24	1.16
73462--73513	24	2.2	24	89	0	77	32	5	7	53	1.53
77913--77998	20	4.3	18	77	14	73	52	3	1	43	1.26
77912--77996	19	4.2	19	75	13	64	54	3	1	41	1.25
79061--79102	16	2.6	16	78	14	50	50	4	0	45	1.23
79075--79116	22	2.0	21	85	4	57	57	4	2	35	1.33
79612--79666	27	2.0	27	86	13	78	56	10	3	29	1.51
88649--88720	19	3.7	20	74	17	62	33	4	4	58	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90560--90600	21	1.9	22	85	5	57	53	4	2	39	1.35
91337--91385	20	2.4	20	89	3	71	14	18	22	44	1.85
91930--91973	20	2.2	20	95	0	79	15	18	22	43	1.88
94483--94539	26	2.2	26	93	0	96	52	22	3	21	1.62
95158--95208	6	8.7	6	73	4	50	41	0	1	56	1.10
95157--95241	17	5.0	17	78	4	82	41	1	4	52	1.30
95150--95204	17	3.1	18	82	17	78	40	0	5	54	1.23
95927--95982	3	18.7	3	92	0	94	64	1	0	33	1.04
97064--97162	28	3.5	28	77	10	103	33	23	2	41	1.66
97064--97314	59	4.3	58	76	9	219	31	25	3	38	1.74
97064--97227	28	5.7	27	68	16	80	33	26	2	37	1.70
97064--97316	58	4.4	58	78	9	232	31	26	3	38	1.75
109085--109207	49	2.5	49	80	5	133	36	16	26	20	1.93
109208--109498	49	5.9	49	84	2	350	39	19	25	14	1.90
109216--109546	98	3.4	98	85	2	407	39	19	24	15	1.91
109208--109523	148	2.1	149	82	4	390	39	20	25	14	1.91
109209--109546	49	6.9	49	78	9	282	39	20	24	15	1.91
110285--110333	3	16.7	3	82	4	64	61	2	0	36	1.08
110285--110328	23	1.9	23	90	0	70	59	2	0	38	1.10
111307--111735	59	7.2	59	76	8	248	29	27	3	38	1.75
111323--111410	31	2.9	29	73	14	88	28	26	6	38	1.82
111321--111670	29	11.7	29	67	18	118	30	26	3	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111325--111675	60	5.9	58	81	6	366	30	27	3	38	1.73
111325--111675	118	3.0	118	82	7	410	30	27	3	38	1.73
111353--111734	59	6.4	59	77	11	257	29	27	3	39	1.73
113996--114119	9	13.8	8	70	17	59	39	0	4	55	1.24
113997--114119	18	6.8	17	72	11	77	39	0	4	56	1.24
114378--114444	29	2.4	27	76	18	66	26	2	1	68	1.12
119412--119451	21	1.9	21	84	0	53	57	5	7	30	1.48

Tables:   1

The End!