Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014825.1 Kokia drynarioides strain JFW-HI SEQ_129867, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 34625
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35

Warning! 200 characters in sequence are not A, C, G, or T


Found at i:22828 original size:2 final size:2

Alignment explanation


    Indices: 22821--22850  Score: 60
    Period size: 2  Copynumber: 15.0  Consensus size: 2

      22811 CCTCCTCCTC

                                                        
      22821 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

      22851 TTAATAGTTA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50


Consensus pattern (2 bp):   
CT

Found at i:22898 original size:17 final size:18

Alignment explanation


    Indices: 22865--22898  Score: 52
    Period size: 17  Copynumber: 1.9  Consensus size: 18

      22855 TAGTTAACCC

                        *     
      22865 TCACCCACACTATAAATA
          1 TCACCCACACTACAAATA

                             
      22883 TCACCC-CACTACAAAT
          1 TCACCCACACTACAAAT

      22899 CCTTCTTCTT


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    9  0.60
  18    6  0.40

ACGTcount: A:0.41, C:0.38, G:0.00, T:0.21


Consensus pattern (18 bp):   
TCACCCACACTACAAATA

Found at i:23128 original size:2 final size:2

Alignment explanation


    Indices: 23121--23164  Score: 88
    Period size: 2  Copynumber: 22.0  Consensus size: 2

      23111 TTGATGGTAT

                                                                          
      23121 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

              
      23163 TC
          1 TC

      23165 NNNNNNNNNN


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   42  1.00

ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50


Consensus pattern (2 bp):   
TC

Done.