Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001483.1 Kokia drynarioides strain JFW-HI SEQ_113018, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 853

Length: 1422
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31


Found at i:1320 original size:3 final size:3

Alignment explanation


    Indices: 1312--1354  Score: 50
    Period size: 3  Copynumber: 14.0  Consensus size: 3

       1302 GTTTTTCACT

                                * * *                               
       1312 TTA TTA TTA TTA TTA ATG CTA TTA TTAA TTA TTA TTA TTA TTA
          1 TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA

       1355 ATTAATAACT


Statistics
Matches: 34,  Mismatches: 5, Indels: 2
        0.83            0.12        0.05

Matches are distributed among these distances:
   3   31  0.91
   4    3  0.09

ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60


Consensus pattern (3 bp):   
TTA

Found at i:1336 original size:12 final size:10

Alignment explanation


    Indices: 1312--1360  Score: 57
    Period size: 10  Copynumber: 4.8  Consensus size: 10

       1302 GTTTTTCACT

                      
       1312 TTATT-ATTA
          1 TTATTAATTA

                        
       1321 TTATTAATGCTA
          1 TTATTAAT--TA

                      
       1333 TTATTAATTA
          1 TTATTAATTA

                      
       1343 TTATT-ATTA
          1 TTATTAATTA

                     
       1352 TTAATTAAT
          1 TT-ATTAAT

       1361 AACTTTAAAA


Statistics
Matches: 35,  Mismatches: 0, Indels: 8
        0.81            0.00        0.19

Matches are distributed among these distances:
   9   11  0.31
  10   12  0.34
  11    2  0.06
  12   10  0.29

ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59


Consensus pattern (10 bp):   
TTATTAATTA
Done.