genome.fa.s14834.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014834.1 Kokia drynarioides strain JFW-HI SEQ_129876, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  475149

Tables:   1   

This is table  1  of  1  ( 115 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1112--1166	27	2.0	27	89	0	83	58	5	0	36	1.21
1113--1169	14	4.1	14	88	4	80	57	5	0	36	1.21
1364--1533	81	2.1	82	87	4	245	40	13	3	42	1.61
1558--1583	2	13.0	2	100	0	52	0	50	0	50	1.00
6410--6448	4	9.8	4	82	0	51	41	28	5	25	1.77
6412--6446	12	2.9	12	91	0	61	40	28	5	25	1.78
11592--11646	29	2.0	28	85	7	76	41	5	9	43	1.59
11634--11673	17	2.4	17	88	12	57	72	0	0	27	0.85
13513--13559	21	2.2	21	96	0	85	27	14	12	44	1.82
13548--13579	7	4.6	7	100	0	64	40	15	15	28	1.88
14175--14213	14	2.7	15	84	8	53	53	15	10	20	1.70
16032--16064	7	4.7	7	96	0	57	33	27	27	12	1.92
16306--16362	22	2.5	23	80	13	64	45	0	1	52	1.11
16425--16463	17	2.3	17	86	0	51	56	5	2	35	1.35
17645--17731	30	2.8	30	73	15	79	29	10	12	47	1.75
17741--18224	252	1.9	252	83	3	625	36	16	13	33	1.87
20830--20860	16	1.9	16	93	0	53	54	3	0	41	1.16
23593--23805	41	5.1	41	75	7	160	36	16	23	23	1.94
23616--23848	126	1.8	127	83	2	308	39	15	22	21	1.91
23742--23828	41	2.1	41	80	4	95	40	14	22	21	1.91
23940--24010	36	1.9	38	85	5	101	54	7	0	38	1.27
27438--27585	46	3.2	46	84	9	171	11	20	20	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27437--27582	23	6.3	23	81	9	147	11	20	21	45	1.83
34928--34974	21	2.2	21	85	7	60	19	8	2	70	1.24
41977--42018	19	2.1	21	86	8	61	40	4	0	54	1.21
47390--47427	19	2.0	20	85	10	53	39	18	7	34	1.80
47434--47470	16	2.2	17	90	9	58	56	0	0	43	0.99
95864--95905	18	2.5	17	82	17	52	47	11	16	23	1.80
98261--98302	14	3.1	14	83	13	52	69	7	0	23	1.13
100352--100409	29	2.0	30	86	3	82	32	6	13	46	1.70
103355--103434	38	2.2	37	91	6	128	50	5	12	32	1.62
103595--103637	21	2.0	20	91	8	68	41	11	0	46	1.40
104997--105120	23	5.3	23	78	5	115	45	21	21	11	1.83
104993--105120	46	2.8	45	80	8	141	45	21	21	12	1.84
119860--119940	29	2.8	28	76	14	92	41	2	18	37	1.64
136986--137047	27	2.2	27	80	5	70	66	0	3	30	1.08
137354--137398	20	2.2	20	84	0	63	55	4	0	40	1.20
147000--147037	2	19.0	2	100	0	76	50	0	0	50	1.00
149589--150133	269	2.0	270	94	0	957	29	15	22	32	1.94
169020--169053	7	5.1	7	86	13	54	41	0	0	58	0.98
169019--169059	12	3.2	12	86	10	55	43	0	0	56	0.99
171556--171581	13	2.0	13	100	0	52	53	0	15	30	1.42
173566--173594	6	4.8	6	100	0	58	48	17	0	34	1.47
188088--188132	18	2.6	17	79	6	63	42	2	17	37	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
189709--189742	2	17.0	2	100	0	68	50	0	0	50	1.00
194356--194404	23	2.1	23	92	0	80	10	24	22	42	1.84
203210--203438	121	1.9	120	91	0	377	35	17	6	39	1.76
219455--219493	19	2.0	19	85	14	53	71	0	5	23	1.05
224753--224987	117	2.0	117	96	0	434	27	19	25	28	1.99
228052--228125	37	2.0	37	100	0	148	16	10	10	62	1.55
238251--238280	11	2.7	11	100	0	60	30	0	0	70	0.88
247951--247990	16	2.5	17	77	22	50	65	0	2	32	1.06
260150--260176	2	13.5	2	100	0	54	51	0	0	48	1.00
262736--262773	18	2.1	18	100	0	76	10	21	21	47	1.80
267007--267038	7	4.4	7	96	4	55	84	0	3	12	0.74
268550--268588	20	2.0	20	85	10	53	53	2	2	41	1.28
278657--278699	21	2.0	21	100	0	86	39	18	13	27	1.89
284260--284289	4	7.5	4	100	0	60	0	23	0	76	0.78
293684--293715	2	16.0	2	93	0	55	50	3	0	46	1.17
296729--296786	31	1.9	30	86	10	82	50	22	3	24	1.65
298550--298587	16	2.4	17	82	13	53	28	2	5	63	1.30
300448--300481	14	2.5	14	90	4	52	47	0	2	50	1.16
303148--303198	19	2.6	20	81	12	61	33	0	1	64	1.05
303167--303215	16	3.0	16	81	3	53	26	0	0	73	0.83
313600--313636	18	2.1	18	100	0	74	29	16	27	27	1.97
317981--318013	12	2.9	11	91	8	57	30	0	0	69	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
318844--319182	56	6.2	53	73	15	174	31	17	15	35	1.91
318960--319070	57	1.9	57	87	7	163	29	15	11	43	1.82
319266--319611	118	2.9	118	90	1	516	32	15	13	38	1.87
319066--319808	62	12.1	62	68	15	332	29	15	13	41	1.86
322771--322826	22	2.5	23	77	8	71	37	39	3	19	1.69
323841--323984	50	2.8	50	79	8	130	31	6	2	59	1.37
325004--325125	30	4.1	31	89	6	189	27	6	4	61	1.41
325970--326590	62	10.4	60	74	11	442	40	14	16	28	1.88
326483--326707	109	2.1	107	81	9	251	38	15	15	30	1.89
329001--329042	21	2.0	21	81	4	50	30	11	2	54	1.49
338036--338061	13	2.0	13	100	0	52	61	7	15	15	1.55
338867--339138	134	2.0	134	98	0	526	36	18	13	31	1.89
343141--343371	117	2.0	117	94	0	408	36	22	8	32	1.85
345679--345759	41	2.0	41	97	0	153	28	14	20	35	1.93
345679--345742	21	3.1	21	64	20	53	26	15	23	34	1.95
345691--345756	21	3.2	21	66	20	57	27	15	18	39	1.90
351111--351156	22	2.1	23	88	8	69	19	15	0	65	1.28
358520--358698	44	4.2	44	76	13	108	70	18	3	7	1.25
358520--358643	56	2.2	56	82	2	142	70	16	3	9	1.28
358563--358639	23	3.4	23	72	16	72	70	15	1	12	1.24
358618--358696	20	4.0	20	73	18	60	72	20	2	5	1.16
361647--361713	6	11.2	6	100	0	134	50	16	32	0	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
368027--368068	21	2.0	21	100	0	84	38	33	9	19	1.84
373785--373828	19	2.3	19	84	0	52	25	4	0	70	1.06
376712--376761	13	3.6	14	75	24	52	60	2	0	38	1.09
396060--396084	7	3.6	7	100	0	50	84	0	0	16	0.63
396119--396211	42	2.2	44	90	3	145	65	1	4	29	1.18
396570--396631	19	3.1	19	79	9	70	27	1	3	67	1.15
396570--396631	21	3.1	20	81	6	65	27	1	3	67	1.15
401296--401326	14	2.2	14	94	0	53	48	0	0	51	1.00
401588--401643	3	18.7	3	84	0	76	58	0	33	7	1.25
406631--406655	3	8.3	3	100	0	50	32	68	0	0	0.90
414635--414689	26	2.2	26	86	3	76	70	5	9	14	1.30
426944--426993	22	2.2	23	82	3	57	48	20	20	12	1.80
426956--427000	23	1.9	24	90	4	74	44	22	24	8	1.81
429436--429519	43	2.0	43	92	4	143	15	20	14	50	1.78
434829--434885	30	1.9	29	85	3	78	26	0	5	68	1.11
435287--435331	22	2.0	23	86	4	65	31	0	4	64	1.13
435334--435396	32	1.9	32	83	3	81	36	0	11	52	1.37
435552--435734	94	1.9	95	85	1	251	47	8	14	29	1.74
435820--435874	15	3.4	15	75	18	56	43	0	1	54	1.10
436993--437028	9	3.9	9	92	7	63	19	0	0	80	0.71
436992--437027	10	3.7	10	92	7	65	16	0	0	83	0.65
436992--437028	19	1.9	19	100	0	74	18	0	0	81	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
439516--439556	18	2.2	19	83	12	50	24	0	7	68	1.15
447541--447565	2	12.5	2	100	0	50	52	0	0	48	1.00
450822--450865	21	2.1	21	87	4	63	13	9	9	68	1.40
471210--471247	3	12.7	3	100	0	76	0	34	0	65	0.93
474215--474280	31	2.1	31	82	0	78	50	7	4	37	1.52

Tables:   1

The End!