Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014835.1 Kokia drynarioides strain JFW-HI SEQ_129877, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 538739
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Warning! 268 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:6593 original size:10 final size:10
Alignment explanation
Indices: 6578--6634 Score: 55
Period size: 10 Copynumber: 5.7 Consensus size: 10
6568 TATAGATTCA
*
6578 ATTTTATTTT
1 ATTTTATTTC
6588 ATTTTA-TTC
1 ATTTTATTTC
6597 ATTTTTATTTC
1 A-TTTTATTTC
6608 ATTTTATTT-
1 ATTTTATTTC
*
6617 GTTTTAATTTC
1 ATTTT-ATTTC
*
6628 AGTTTAT
1 ATTTTAT
6635 GACTCGAAGC
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 7 0.18
10 25 0.64
11 7 0.18
ACGTcount: A:0.21, C:0.05, G:0.04, T:0.70
Consensus pattern (10 bp):
ATTTTATTTC
Found at i:6621 original size:20 final size:20
Alignment explanation
Indices: 6573--6634 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 20
6563 TAGGCTATAG
* *
6573 ATTCAATTTTATTTTATTTT
1 ATTCATTTTTATTTCATTTT
6593 ATTCATTTTTATTTCATTTT
1 ATTCATTTTTATTTCATTTT
** * *
6613 ATTTGTTTTAATTTCAGTTT
1 ATTCATTTTTATTTCATTTT
6633 AT
1 AT
6635 GACTCGAAGC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.23, C:0.06, G:0.03, T:0.68
Consensus pattern (20 bp):
ATTCATTTTTATTTCATTTT
Found at i:9419 original size:18 final size:18
Alignment explanation
Indices: 9396--9438 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
9386 TATAGGATCG
9396 ACCCGACCCAACTACACA
1 ACCCGACCCAACTACACA
9414 ACCCGACCCAACTACACA
1 ACCCGACCCAACTACACA
9432 ACCCGAC
1 ACCCGAC
9439 AATGAAAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.37, C:0.51, G:0.07, T:0.05
Consensus pattern (18 bp):
ACCCGACCCAACTACACA
Found at i:15598 original size:79 final size:78
Alignment explanation
Indices: 15498--15670 Score: 197
Period size: 78 Copynumber: 2.2 Consensus size: 78
15488 GTTTATCCAT
** * * * *
15498 TAGGCACTGGGTGTTAGGATTTGACGGATATTTATTGGTTAATCCAACTAGAGC-GAGGCTTACT
1 TAGGCACTGGGTGCCAAGATTTGACGGATA-ATATTGGTTAATCCAACTAGAACTGA-GCTCACT
*
15562 TTTATGGTTAT-TCAC
64 TTTACGGTTATAT-AC
* * *
15577 TAGGCACTGGGTGCCAAGATTTGATGGGTAATGTTGGTTAATCCAACTAGAACTGAGCTCACTTT
1 TAGGCACTGGGTGCCAAGATTTGACGGATAATATTGGTTAATCCAACTAGAACTGAGCTCACTTT
*
15642 TACGGTTATATGC
66 TACGGTTATATAC
*
15655 TAGACACTGGGTGCCA
1 TAGGCACTGGGTGCCA
15671 TAATCATTGA
Statistics
Matches: 80, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
78 52 0.65
79 28 0.35
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (78 bp):
TAGGCACTGGGTGCCAAGATTTGACGGATAATATTGGTTAATCCAACTAGAACTGAGCTCACTTT
TACGGTTATATAC
Found at i:28283 original size:304 final size:304
Alignment explanation
Indices: 27731--28340 Score: 1087
Period size: 304 Copynumber: 2.0 Consensus size: 304
27721 GGTGTTCTTG
*
27731 AGTTAGATGCAATTTCAGCTTTAAGTGAACAGGTATCCATTTTGGCCAACATTATACAGAACATG
1 AGTTAGAAGCAATTTCAGCTTTAAGTGAACAGGTATCCATTTTGGCCAACATTATACAGAACATG
27796 AAAGGAACAAGTGAAGCTACCCCCATTCAAGTGGCACAACAATTGGATGTCCCGACATTTTCATG
66 AAAGGAACAAGTGAAGCTACCCCCATTCAAGTGGCACAACAATTGGATGTCCCGACATTTTCATG
* * *
27861 TGAAATTTGTGGCGACAACCACAGTTATGAGGATTGCCCATAATATGATGAGAATGCGTTCTATG
131 TGAAAATTGTGGCGACAACCACAGTTATGAGGATTGCCCACAACATGATGAGAATGCGTTCTATG
*
27926 CCAACAACATTAGAGGAAATTCCTATGGTAACTCATTCAACAATCGAACTCAACAACCTTCGGGG
196 CCAACAACATCAGAGGAAATTCCTATGGTAACTCATTCAACAATCGAACTCAACAACCTTCGGGG
* *
27991 AGTCAAAATGTATCTACATATAGATATGGTAATTCCTCCCATCA
261 AGTCAAAATGTATCTACATATAGATATGGCAATTCCTCACATCA
28035 AGTTAGAAGCAATTTCAGCTTTAAGTGAACAGGTATCCATTTTGGCCAACATTATACAGAACATG
1 AGTTAGAAGCAATTTCAGCTTTAAGTGAACAGGTATCCATTTTGGCCAACATTATACAGAACATG
* *
28100 AAGGGAACAAGTGAAGCTACCCCTATTCAAGTGGCACAACAATTGGATGTCCCGACATTTTCATG
66 AAAGGAACAAGTGAAGCTACCCCCATTCAAGTGGCACAACAATTGGATGTCCCGACATTTTCATG
* *
28165 TGAAAATTGTGGCGACAACCACAGTTATGAGGATTGCCTACAACATGCTGAGAATGCGTTCTATG
131 TGAAAATTGTGGCGACAACCACAGTTATGAGGATTGCCCACAACATGATGAGAATGCGTTCTATG
* *
28230 CCAATAACATCAGAGGAAATTCCTATGGTAACTCATTCAACAATC-ACACTCAACAACCTTGGGG
196 CCAACAACATCAGAGGAAATTCCTATGGTAACTCATTCAACAATCGA-ACTCAACAACCTTCGGG
28294 GAGTCAAAATGTATCTACATATAGATATGGCAATTCCTCACATCA
260 GAGTCAAAATGTATCTACATATAGATATGGCAATTCCTCACATCA
28339 AG
1 AG
28341 GGAGTTATAA
Statistics
Matches: 292, Mismatches: 13, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
303 1 0.00
304 291 1.00
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (304 bp):
AGTTAGAAGCAATTTCAGCTTTAAGTGAACAGGTATCCATTTTGGCCAACATTATACAGAACATG
AAAGGAACAAGTGAAGCTACCCCCATTCAAGTGGCACAACAATTGGATGTCCCGACATTTTCATG
TGAAAATTGTGGCGACAACCACAGTTATGAGGATTGCCCACAACATGATGAGAATGCGTTCTATG
CCAACAACATCAGAGGAAATTCCTATGGTAACTCATTCAACAATCGAACTCAACAACCTTCGGGG
AGTCAAAATGTATCTACATATAGATATGGCAATTCCTCACATCA
Found at i:28447 original size:18 final size:18
Alignment explanation
Indices: 28424--28468 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
28414 TCTTGATCAA
*
28424 ATGCAAGCACATAG-CCAG
1 ATGCAACCACA-AGACCAG
*
28442 ATGCAACCACAAGACCGG
1 ATGCAACCACAAGACCAG
28460 ATGCAACCA
1 ATGCAACCA
28469 TAACAGAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 2 0.08
18 22 0.92
ACGTcount: A:0.40, C:0.31, G:0.20, T:0.09
Consensus pattern (18 bp):
ATGCAACCACAAGACCAG
Found at i:29002 original size:167 final size:167
Alignment explanation
Indices: 28719--29047 Score: 541
Period size: 167 Copynumber: 2.0 Consensus size: 167
28709 ATCATGTTGC
*
28719 TATGTAAACAACAGGGTATTATACATAGAGATGGTGAAGAGGTGCCAAAGAATAAGGGTCCCATC
1 TATGTAAACAACAGGGTATTATACATAGAGATGGTGAAGAGGTGCCAAAGAATAAGAGTCCCATC
** *
28784 AACAATATCTCAGTAGAGAGAATGATGAGAGAGCAAGAGGAACCAATAGTGAAAAAAGCACCCAA
66 AACAATATCTCAGTAGAGAGAATGACAAGAGAACAAGAGGAACCAATAGTGAAAAAAGCACCCAA
28849 GAAGAAGGAGAAGGAGAAGAAGAAGGAAAAAATAGGG
131 GAAGAAGGAGAAGGAGAAGAAGAAGGAAAAAATAGGG
* * * * *
28886 TATGTAAACAATAGGGTATTGTACCTAGAGATGGTGAAGAGGTGTCAGAGAATAAGAGTCCCATC
1 TATGTAAACAACAGGGTATTATACATAGAGATGGTGAAGAGGTGCCAAAGAATAAGAGTCCCATC
* * *
28951 AATAATATCTCAGTAGAGAGAATGACAAGAGAACAAGAGGCACCGATAGTGAAAAAAGCACCCAA
66 AACAATATCTCAGTAGAGAGAATGACAAGAGAACAAGAGGAACCAATAGTGAAAAAAGCACCCAA
*
29016 GAAGAAGGAGAAGGGGAAGAAGAAGGAAAAAA
131 GAAGAAGGAGAAGGAGAAGAAGAAGGAAAAAA
29048 AAGGATAATG
Statistics
Matches: 149, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
167 149 1.00
ACGTcount: A:0.46, C:0.12, G:0.28, T:0.14
Consensus pattern (167 bp):
TATGTAAACAACAGGGTATTATACATAGAGATGGTGAAGAGGTGCCAAAGAATAAGAGTCCCATC
AACAATATCTCAGTAGAGAGAATGACAAGAGAACAAGAGGAACCAATAGTGAAAAAAGCACCCAA
GAAGAAGGAGAAGGAGAAGAAGAAGGAAAAAATAGGG
Found at i:36269 original size:23 final size:22
Alignment explanation
Indices: 36216--36270 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 22
36206 TTAGGGAACT
*
36216 CAAAATTCTCAATATCAATCGG
1 CAAAATTCTCAATATCAATCGA
*
36238 TAAATATTCTCAATATCAATCGA
1 CAAA-ATTCTCAATATCAATCGA
36261 CAAAGATTCT
1 CAAA-ATTCT
36271 TATGGTCGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 3 0.11
23 25 0.89
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (22 bp):
CAAAATTCTCAATATCAATCGA
Found at i:41496 original size:58 final size:58
Alignment explanation
Indices: 41406--41521 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 58
41396 TCTGCAATAA
*
41406 CCGTTCATGAAATAGAGCCCCCCATGTCAAAAGATCCGGTGATATTCCTCACAAAAGC
1 CCGTTCATGAAATAGAGCCCCCCATGTCAAAAGATCCAGTGATATTCCTCACAAAAGC
41464 CCGTTCATGAAATAGAGCCCCCCATGTCAAAAGATCCAGTGATATTCCTCACAAAAGC
1 CCGTTCATGAAATAGAGCCCCCCATGTCAAAAGATCCAGTGATATTCCTCACAAAAGC
41522 GACCAAAGAC
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.21
Consensus pattern (58 bp):
CCGTTCATGAAATAGAGCCCCCCATGTCAAAAGATCCAGTGATATTCCTCACAAAAGC
Found at i:51080 original size:15 final size:15
Alignment explanation
Indices: 51039--51082 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
51029 TTTTTTTACG
*
51039 AAATCTATGATTTTC
1 AAATCTATGAATTTC
* *
51054 AAA-GTATCAATTTC
1 AAATCTATGAATTTC
51068 AAATCTATGAATTTC
1 AAATCTATGAATTTC
51083 CCAAATTTTG
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.39, C:0.14, G:0.07, T:0.41
Consensus pattern (15 bp):
AAATCTATGAATTTC
Found at i:67114 original size:16 final size:16
Alignment explanation
Indices: 67093--67124 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
67083 TCTACGAGAA
67093 GATAGTTTTTGATATT
1 GATAGTTTTTGATATT
67109 GATAGTTTTTGATATT
1 GATAGTTTTTGATATT
67125 CTAGCGAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.00, G:0.19, T:0.56
Consensus pattern (16 bp):
GATAGTTTTTGATATT
Found at i:71563 original size:27 final size:28
Alignment explanation
Indices: 71525--71582 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
71515 TATCGAGGGG
*
71525 ATTGGTGATC-TTATCACACTATTTGAT
1 ATTGGCGATCTTTATCACACTATTTGAT
* *
71552 ATTGGCGATCTTTATCGCACTATTTGTT
1 ATTGGCGATCTTTATCACACTATTTGAT
71580 ATT
1 ATT
71583 TGGTAGACTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 9 0.33
28 18 0.67
ACGTcount: A:0.22, C:0.16, G:0.16, T:0.47
Consensus pattern (28 bp):
ATTGGCGATCTTTATCACACTATTTGAT
Found at i:73079 original size:18 final size:19
Alignment explanation
Indices: 73045--73090 Score: 51
Period size: 18 Copynumber: 2.4 Consensus size: 19
73035 ACGTATTAAA
*
73045 ATATATTTATTACTTAT-T
1 ATATTTTTATTACTTATAT
73063 ATATTTTTATT-CTTTATAT
1 ATATTTTTATTAC-TTATAT
73082 ATATATTTT
1 ATAT-TTTT
73091 TAATATGTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 1 0.04
18 14 0.58
19 5 0.21
20 4 0.17
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.65
Consensus pattern (19 bp):
ATATTTTTATTACTTATAT
Found at i:77243 original size:4 final size:4
Alignment explanation
Indices: 77236--77261 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
77226 TTAATCTGAA
77236 AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AA
77262 TTGTTAGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:81720 original size:15 final size:15
Alignment explanation
Indices: 81700--81732 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
81690 TTTTATTTTC
81700 TTTATTGCAGGTGAT
1 TTTATTGCAGGTGAT
*
81715 TTTATTTCAGGTGAT
1 TTTATTGCAGGTGAT
81730 TTT
1 TTT
81733 TTGTCTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.06, G:0.21, T:0.55
Consensus pattern (15 bp):
TTTATTGCAGGTGAT
Found at i:83045 original size:37 final size:37
Alignment explanation
Indices: 82991--83064 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
82981 ATATTGACTA
82991 ATCATATACCCTCTTCGCTCTAATGATTCCTTTAGAT
1 ATCATATACCCTCTTCGCTCTAATGATTCCTTTAGAT
*
83028 ATCATATACCCTTTTCGCTCTAATGATTCCTTTAGAT
1 ATCATATACCCTCTTCGCTCTAATGATTCCTTTAGAT
83065 CACCCAACTC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.24, C:0.26, G:0.08, T:0.42
Consensus pattern (37 bp):
ATCATATACCCTCTTCGCTCTAATGATTCCTTTAGAT
Found at i:104204 original size:19 final size:19
Alignment explanation
Indices: 104180--104228 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
104170 TAATATATGT
104180 TAAAGTTATGACAAAAGAA
1 TAAAGTTATGACAAAAGAA
*
104199 TAAAGTTATGGCAAAAGAA
1 TAAAGTTATGACAAAAGAA
104218 TAAAGTTATGA
1 TAAAGTTATGA
104229 TATGAATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.53, C:0.04, G:0.18, T:0.24
Consensus pattern (19 bp):
TAAAGTTATGACAAAAGAA
Found at i:107397 original size:25 final size:24
Alignment explanation
Indices: 107361--107407 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 24
107351 AAACAACTTC
107361 TAAAAAAAACTC-AAGAGCAATTCT
1 TAAAAAAAACTCAAAGAG-AATTCT
107385 TAAAGAAAAACTCAAAGAGAATT
1 TAAA-AAAAACTCAAAGAGAATT
107408 ATTATTAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 4 0.19
25 12 0.57
26 5 0.24
ACGTcount: A:0.57, C:0.13, G:0.11, T:0.19
Consensus pattern (24 bp):
TAAAAAAAACTCAAAGAGAATTCT
Found at i:110631 original size:21 final size:21
Alignment explanation
Indices: 110606--110651 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
110596 GTGAAAAACG
*
110606 TGATATGTGTTATGTGATCTA
1 TGATAAGTGTTATGTGATCTA
*
110627 TGATAAGTGTTATGTGATGTA
1 TGATAAGTGTTATGTGATCTA
110648 TGAT
1 TGAT
110652 GTATGAATTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.26, C:0.02, G:0.26, T:0.46
Consensus pattern (21 bp):
TGATAAGTGTTATGTGATCTA
Found at i:110800 original size:7 final size:7
Alignment explanation
Indices: 110788--110819 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
110778 ATGAAATTAC
110788 GTGATAT
1 GTGATAT
110795 GTGATAT
1 GTGATAT
*
110802 GTGACAT
1 GTGATAT
110809 GTGATAT
1 GTGATAT
110816 GTGA
1 GTGA
110820 GCATGATAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.28, C:0.03, G:0.31, T:0.38
Consensus pattern (7 bp):
GTGATAT
Found at i:110810 original size:14 final size:14
Alignment explanation
Indices: 110788--110824 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
110778 ATGAAATTAC
*
110788 GTGATATGTGATAT
1 GTGACATGTGATAT
110802 GTGACATGTGATAT
1 GTGACATGTGATAT
110816 GTGAGCATG
1 GTGA-CATG
110825 ATAGATGCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 17 0.81
15 4 0.19
ACGTcount: A:0.27, C:0.05, G:0.32, T:0.35
Consensus pattern (14 bp):
GTGACATGTGATAT
Found at i:110905 original size:46 final size:45
Alignment explanation
Indices: 110809--110933 Score: 135
Period size: 46 Copynumber: 2.7 Consensus size: 45
110799 TATGTGACAT
* * * * * *
110809 GTGATATGTGAGCATGATAGATGCTAAATCGTGGAAATCGTGAAAT
1 GTGATATGTGAGCATGAAAAATGCAAAAT-GTGAAAACCGTGAAAA
* *
110855 GTGATATGTGAGCATGACACATGCAAAAATGTGAAAACCGT-AACAA
1 GTGATATGTGAGCATGAAAAATGC-AAAATGTGAAAACCGTGAA-AA
110901 GTGATATGTGAGCATGAAAAATGCTAAAATGTG
1 GTGATATGTGAGCATGAAAAATGC-AAAATGTG
110934 GTAAGTGATA
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
45 2 0.03
46 62 0.91
47 4 0.06
ACGTcount: A:0.39, C:0.10, G:0.26, T:0.25
Consensus pattern (45 bp):
GTGATATGTGAGCATGAAAAATGCAAAATGTGAAAACCGTGAAAA
Found at i:111189 original size:17 final size:17
Alignment explanation
Indices: 111169--111201 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
111159 TTTAAGGACT
111169 TTTTAATTTTA-TTTAAG
1 TTTT-ATTTTAGTTTAAG
111186 TTTTATTTTAGTTTAA
1 TTTTATTTTAGTTTAA
111202 TAAGTGTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (17 bp):
TTTTATTTTAGTTTAAG
Found at i:111344 original size:33 final size:34
Alignment explanation
Indices: 111296--111360 Score: 96
Period size: 33 Copynumber: 1.9 Consensus size: 34
111286 AAGATTGTGA
* *
111296 TTTAATTATGTCATGCATTAT-TAATCTACATCT
1 TTTAAATATGACATGCATTATGTAATCTACATCT
*
111329 TTTAAATATGACATGCATTATGTGATCTACAT
1 TTTAAATATGACATGCATTATGTAATCTACAT
111361 TTAATAAAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 19 0.68
34 9 0.32
ACGTcount: A:0.32, C:0.14, G:0.09, T:0.45
Consensus pattern (34 bp):
TTTAAATATGACATGCATTATGTAATCTACATCT
Found at i:111479 original size:50 final size:50
Alignment explanation
Indices: 111407--111550 Score: 148
Period size: 50 Copynumber: 2.8 Consensus size: 50
111397 ACTCTCAGGA
* *
111407 TTAGTTAAGTTTGCATCATAAATAATGACATGCATTAAGTAACTAACATG
1 TTAGTTAAATTTGCATCTTAAATAATGACATGCATTAAGTAACTAACATG
* ** * **
111457 TTAGTTAAATATGCATCTTAAATCCT-AGCATGCATTATGTAACTCCCATG
1 TTAGTTAAATTTGCATCTTAAATAATGA-CATGCATTAAGTAACTAACATG
* *
111507 TTAGTTAAAGTTTGCATCATTAAATCAA-GTCATGCATTTAGTAA
1 TTAGTTAAA-TTTGCATC-TTAAAT-AATGACATGCATTAAGTAA
111551 TCCATTAGTT
Statistics
Matches: 75, Mismatches: 14, Indels: 8
0.77 0.14 0.08
Matches are distributed among these distances:
49 1 0.01
50 49 0.65
51 7 0.09
52 18 0.24
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (50 bp):
TTAGTTAAATTTGCATCTTAAATAATGACATGCATTAAGTAACTAACATG
Found at i:113053 original size:18 final size:18
Alignment explanation
Indices: 113013--113054 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
113003 TGATGCAGAT
113013 ATTATATGTGTTTATTGC
1 ATTATATGTGTTTATTGC
* *
113031 CTTATGTGTGTTTATGTG-
1 ATTATATGTGTTTAT-TGC
113049 ATTATA
1 ATTATA
113055 GTAAGAAACT
Statistics
Matches: 19, Mismatches: 4, Indels: 2
0.76 0.16 0.08
Matches are distributed among these distances:
18 17 0.89
19 2 0.11
ACGTcount: A:0.21, C:0.05, G:0.19, T:0.55
Consensus pattern (18 bp):
ATTATATGTGTTTATTGC
Found at i:124860 original size:37 final size:37
Alignment explanation
Indices: 124808--125020 Score: 272
Period size: 37 Copynumber: 5.8 Consensus size: 37
124798 TGCATCTAAA
* *
124808 TATTCAGGCTTTGTGCCTAGTAGGCTTTGTGCTAGTG
1 TATTCAGGCTATGTGCCTAGTAGGCTTTGTGCTGGTG
124845 TATTCAGGCTATGTGCCTAGTAGGCTTTGTG-TCGGTG
1 TATTCAGGCTATGTGCCTAGTAGGCTTTGTGCT-GGTG
*
124882 TATTAAGGCTATGTGCCTAGTAGGCTTTGTG-TCGGTG
1 TATTCAGGCTATGTGCCTAGTAGGCTTTGTGCT-GGTG
**
124919 TATTCAGGCTATGTGCCTAGTAGGCTTTGTGGC-GGCA
1 TATTCAGGCTATGTGCCTAGTAGGCTTTGT-GCTGGTG
* *
124956 TATTCAGGCTATGTGCCTAATAGGCTTTGTGCCGGTG
1 TATTCAGGCTATGTGCCTAGTAGGCTTTGTGCTGGTG
* * *
124993 TATTC-GAGTTGTGTGCCTAATAGGCTTT
1 TATTCAG-GCTATGTGCCTAGTAGGCTTT
125021 AAGAATGAAT
Statistics
Matches: 160, Mismatches: 11, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
36 4 0.03
37 155 0.97
38 1 0.01
ACGTcount: A:0.15, C:0.16, G:0.31, T:0.38
Consensus pattern (37 bp):
TATTCAGGCTATGTGCCTAGTAGGCTTTGTGCTGGTG
Found at i:124896 original size:21 final size:20
Alignment explanation
Indices: 124865--124933 Score: 56
Period size: 21 Copynumber: 3.5 Consensus size: 20
124855 ATGTGCCTAG
*
124865 TAGGCTTTGTGTCGGTGTAT
1 TAGGCTATGTGTCGGTGTAT
* *
124885 TAAGGCTATGTG-C---CTAG
1 T-AGGCTATGTGTCGGTGTAT
*
124902 TAGGCTTTGTGTCGGTGTAT
1 TAGGCTATGTGTCGGTGTAT
124922 TCAGGCTATGTG
1 T-AGGCTATGTG
124934 CCTAGTAGGC
Statistics
Matches: 36, Mismatches: 7, Indels: 11
0.67 0.13 0.20
Matches are distributed among these distances:
16 9 0.25
17 4 0.11
20 5 0.14
21 18 0.50
ACGTcount: A:0.14, C:0.13, G:0.33, T:0.39
Consensus pattern (20 bp):
TAGGCTATGTGTCGGTGTAT
Found at i:125008 original size:111 final size:111
Alignment explanation
Indices: 124808--125020 Score: 304
Period size: 111 Copynumber: 1.9 Consensus size: 111
124798 TGCATCTAAA
* ** *
124808 TATTCAGGCTTTGTGCCTAGTAGGCTTTGTGCTAGTGTATTCAGGCTATGTGCCTAGTAGGCTTT
1 TATTCAGGCTATGTGCCTAGTAGGCTTTGTGCTAGCATATTCAGGCTATGTGCCTAATAGGCTTT
* *
124873 GTGTCGGTGTATTAAGGCTATGTGCCTAGTAGGCTTTGTGTCGGTG
66 GTGCCGGTGTATTAAGGCTATGTGCCTAATAGGCTTTGTGTCGGTG
*
124919 TATTCAGGCTATGTGCCTAGTAGGCTTTGTGGC-GGCATATTCAGGCTATGTGCCTAATAGGCTT
1 TATTCAGGCTATGTGCCTAGTAGGCTTTGT-GCTAGCATATTCAGGCTATGTGCCTAATAGGCTT
* * *
124983 TGTGCCGGTGTATT-CGAGTTGTGTGCCTAATAGGCTTT
65 TGTGCCGGTGTATTAAG-GCTATGTGCCTAATAGGCTTT
125021 AAGAATGAAT
Statistics
Matches: 90, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
110 1 0.01
111 87 0.97
112 2 0.02
ACGTcount: A:0.15, C:0.16, G:0.31, T:0.38
Consensus pattern (111 bp):
TATTCAGGCTATGTGCCTAGTAGGCTTTGTGCTAGCATATTCAGGCTATGTGCCTAATAGGCTTT
GTGCCGGTGTATTAAGGCTATGTGCCTAATAGGCTTTGTGTCGGTG
Found at i:126965 original size:21 final size:21
Alignment explanation
Indices: 126940--126979 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
126930 TGTGAAAAAC
*
126940 ATGATATGTGTTATGTGATCT
1 ATGATAAGTGTTATGTGATCT
*
126961 ATGATAAGTGTTGTGTGAT
1 ATGATAAGTGTTATGTGAT
126980 TTCATCTCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.03, G:0.28, T:0.45
Consensus pattern (21 bp):
ATGATAAGTGTTATGTGATCT
Found at i:127120 original size:7 final size:7
Alignment explanation
Indices: 127108--127135 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
127098 TAAATGAAAT
127108 TATGTGA
1 TATGTGA
127115 TATGTGA
1 TATGTGA
127122 TATGTGA
1 TATGTGA
127129 TATGTGA
1 TATGTGA
127136 GCATGATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.43
Consensus pattern (7 bp):
TATGTGA
Found at i:131185 original size:48 final size:46
Alignment explanation
Indices: 131133--131365 Score: 231
Period size: 48 Copynumber: 4.8 Consensus size: 46
131123 GCTGATGCAT
131133 TAATGCAAGGCATTTAACAAAGATGCATTTAACAAACAAAACAGTTAA
1 TAATGCAA-G-ATTTAACAAAGATGCATTTAACAAACAAAACAGTTAA
**
131181 TAATGC-ATCTTACTAAACAAAGATGCATTTAACAAACAAAACAGTTAA
1 TAATGCAAGATT--T-AACAAAGATGCATTTAACAAACAAAACAGTTAA
* * *
131229 TAGTGC-ATATTACTAAACAAAGATGCATTTAACAAATAAAACAGTTAA
1 TAATGCAAGATT--T-AACAAAGATGCATTTAACAAACAAAACAGTTAA
* *
131277 TAATGC-AGATTACTAAATAAAGATGCATTTAACAAACAAAACACTTAA
1 TAATGCAAGATT--T-AACAAAGATGCATTTAACAAACAAAACAGTTAA
* *
131325 TGATGC-AGATTGTCAAACAAAGATGCATTTAACAAAAAAAA
1 TAATGCAAGATT-T--AACAAAGATGCATTTAACAAACAAAA
131366 AAACTTAATG
Statistics
Matches: 167, Mismatches: 14, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
45 2 0.01
47 3 0.02
48 162 0.97
ACGTcount: A:0.51, C:0.14, G:0.11, T:0.24
Consensus pattern (46 bp):
TAATGCAAGATTTAACAAAGATGCATTTAACAAACAAAACAGTTAA
Found at i:131312 original size:96 final size:96
Alignment explanation
Indices: 131148--131365 Score: 332
Period size: 96 Copynumber: 2.3 Consensus size: 96
131138 CAAGGCATTT
* **
131148 AACAAAGATGCATTTAACAAACAAAACAGTTAATAATGCATCTTACTAAACAAAGATGCATTTAA
1 AACAAAGATGCATTTAACAAAAAAAACAGTTAATAATGCAGATTACTAAACAAAGATGCATTTAA
* *
131213 CAAACAAAACAGTTAAT-AGTGCATATTACT-A
66 CAAACAAAACACTTAATGA-TGCAGATT-CTCA
* *
131244 AACAAAGATGCATTTAACAAATAAAACAGTTAATAATGCAGATTACTAAATAAAGATGCATTTAA
1 AACAAAGATGCATTTAACAAAAAAAACAGTTAATAATGCAGATTACTAAACAAAGATGCATTTAA
*
131309 CAAACAAAACACTTAATGATGCAGATTGTCA
66 CAAACAAAACACTTAATGATGCAGATTCTCA
131340 AACAAAGATGCATTTAACAAAAAAAA
1 AACAAAGATGCATTTAACAAAAAAAA
131366 AAACTTAATG
Statistics
Matches: 112, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
95 1 0.01
96 110 0.98
97 1 0.01
ACGTcount: A:0.52, C:0.14, G:0.10, T:0.24
Consensus pattern (96 bp):
AACAAAGATGCATTTAACAAAAAAAACAGTTAATAATGCAGATTACTAAACAAAGATGCATTTAA
CAAACAAAACACTTAATGATGCAGATTCTCA
Found at i:132731 original size:17 final size:17
Alignment explanation
Indices: 132668--132727 Score: 93
Period size: 17 Copynumber: 3.5 Consensus size: 17
132658 CTGTAGTATA
132668 ATTGTCCCTACATTTTT
1 ATTGTCCCTACATTTTT
*
132685 ATTGTCCTTACATTTTT
1 ATTGTCCCTACATTTTT
* *
132702 ATTGTCACTGCATTTTT
1 ATTGTCCCTACATTTTT
132719 ATTGTCCCT
1 ATTGTCCCT
132728 GCATCTACAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 38 1.00
ACGTcount: A:0.17, C:0.22, G:0.08, T:0.53
Consensus pattern (17 bp):
ATTGTCCCTACATTTTT
Found at i:132740 original size:34 final size:34
Alignment explanation
Indices: 132668--132750 Score: 94
Period size: 34 Copynumber: 2.4 Consensus size: 34
132658 CTGTAGTATA
* * * * **
132668 ATTGTCCCTACATTTTTATTGTCCTTACATTTTT
1 ATTGTCACTGCATTTTTATTGTCCCTACATCTAC
*
132702 ATTGTCACTGCATTTTTATTGTCCCTGCATCTAC
1 ATTGTCACTGCATTTTTATTGTCCCTACATCTAC
*
132736 ATTGTCATTGCATTT
1 ATTGTCACTGCATTT
132751 CCATAAATAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 41 1.00
ACGTcount: A:0.18, C:0.22, G:0.10, T:0.51
Consensus pattern (34 bp):
ATTGTCACTGCATTTTTATTGTCCCTACATCTAC
Found at i:136308 original size:57 final size:57
Alignment explanation
Indices: 136242--136357 Score: 232
Period size: 57 Copynumber: 2.0 Consensus size: 57
136232 ATTAAGGTTT
136242 TATCAATATATATCTATCAATGTCAAATATAAGTATTTTAATTATTCTAGTACAATA
1 TATCAATATATATCTATCAATGTCAAATATAAGTATTTTAATTATTCTAGTACAATA
136299 TATCAATATATATCTATCAATGTCAAATATAAGTATTTTAATTATTCTAGTACAATA
1 TATCAATATATATCTATCAATGTCAAATATAAGTATTTTAATTATTCTAGTACAATA
136356 TA
1 TA
136358 GATAACCATA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 59 1.00
ACGTcount: A:0.42, C:0.10, G:0.05, T:0.42
Consensus pattern (57 bp):
TATCAATATATATCTATCAATGTCAAATATAAGTATTTTAATTATTCTAGTACAATA
Found at i:136357 original size:28 final size:28
Alignment explanation
Indices: 136267--136357 Score: 82
Period size: 28 Copynumber: 3.2 Consensus size: 28
136257 ATCAATGTCA
136267 AATATAAGTATTTTAATTATTCTAGTAC
1 AATATAAGTATTTTAATTATTCTAGTAC
* * *
136295 AATAT-A-TCAATATATATCTA-TCAATGT-C
1 AATATAAGT-ATTTTA-AT-TATTCTA-GTAC
136323 AAATATAAGTATTTTAATTATTCTAGTAC
1 -AATATAAGTATTTTAATTATTCTAGTAC
136352 AATATA
1 AATATA
136358 GATAACCATA
Statistics
Matches: 48, Mismatches: 6, Indels: 18
0.67 0.08 0.25
Matches are distributed among these distances:
26 1 0.02
27 5 0.10
28 21 0.44
29 15 0.31
30 5 0.10
31 1 0.02
ACGTcount: A:0.43, C:0.09, G:0.05, T:0.43
Consensus pattern (28 bp):
AATATAAGTATTTTAATTATTCTAGTAC
Found at i:152160 original size:17 final size:17
Alignment explanation
Indices: 152126--152159 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
152116 TTTTTAAAGC
*
152126 ATAAAATAAATGATAAA
1 ATAAAATAAAAGATAAA
152143 ATAAAATAAAAG-TAAA
1 ATAAAATAAAAGATAAA
152159 A
1 A
152160 AGTTGAGATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.21
Consensus pattern (17 bp):
ATAAAATAAAAGATAAA
Found at i:158319 original size:18 final size:18
Alignment explanation
Indices: 158296--158332 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
158286 AAAGGGCGAT
158296 TTAGTAAATTGATATATG
1 TTAGTAAATTGATATATG
158314 TTAGTAAATTGATATATG
1 TTAGTAAATTGATATATG
158332 T
1 T
158333 CTAAGTGTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.16, T:0.46
Consensus pattern (18 bp):
TTAGTAAATTGATATATG
Found at i:168617 original size:21 final size:21
Alignment explanation
Indices: 168591--168630 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
168581 ACCTACTGTT
168591 GAGGAGGAAGT-TGATGTTGGA
1 GAGGAGGAAGTCTG-TGTTGGA
168612 GAGGAGGAAGTCTGTGTTG
1 GAGGAGGAAGTCTGTGTTG
168631 AAAAGGTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.25, C:0.03, G:0.47, T:0.25
Consensus pattern (21 bp):
GAGGAGGAAGTCTGTGTTGGA
Found at i:171349 original size:13 final size:13
Alignment explanation
Indices: 171331--171358 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
171321 GATCACTGCC
171331 ACTAGAAAGTGCA
1 ACTAGAAAGTGCA
171344 ACTAGAAAGTGCA
1 ACTAGAAAGTGCA
171357 AC
1 AC
171359 GACAATTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.18, G:0.21, T:0.14
Consensus pattern (13 bp):
ACTAGAAAGTGCA
Found at i:172049 original size:66 final size:66
Alignment explanation
Indices: 171942--172073 Score: 228
Period size: 66 Copynumber: 2.0 Consensus size: 66
171932 CATTATCCAC
* **
171942 TTTCCAGCCATGAGATCTACCTTAGCCAATTTATGGGATCCAGTGAAAGGTATTGAAATTCTTGA
1 TTTCCAGCCATGAGATATACCTTAGCCAATTTATGACATCCAGTGAAAGGTATTGAAATTCTTGA
172007 T
66 T
*
172008 TTTCCAGCCATGAGATATTCCTTAGCCAATTTATGACATCCAGTGAAAGGTATTGAAATTCTTGA
1 TTTCCAGCCATGAGATATACCTTAGCCAATTTATGACATCCAGTGAAAGGTATTGAAATTCTTGA
172073 T
66 T
172074 ATTATGGAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 62 1.00
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (66 bp):
TTTCCAGCCATGAGATATACCTTAGCCAATTTATGACATCCAGTGAAAGGTATTGAAATTCTTGA
T
Found at i:199343 original size:2 final size:2
Alignment explanation
Indices: 199338--199366 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
199328 ATACACATAT
199338 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
199367 AATATATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:199723 original size:154 final size:154
Alignment explanation
Indices: 199442--199749 Score: 562
Period size: 154 Copynumber: 2.0 Consensus size: 154
199432 ACCCCATGTT
*
199442 CCTCACTAGTAATGTCTTAGTTCACTAGGAAAATATATACATGTCATCTTAATTAAACATTTGAG
1 CCTCACTAGTAATGTCTTAGTTCACTAGGAAAATATATACATGTCATCTAAATTAAACATTTGAG
* *
199507 ACAACAACAAGAGACACAAGAAATGCCGTAAGTTTCAACAACAAAAGGAATCCTTTGGTAACAGT
66 ACAACAACAAGAGACACAAGAAATGCCGTAAGTTTCAACAACAAAAGGAAACCTTTGCTAACAGT
199572 GCATGTTTACCAGAGGAGTATGCA
131 GCATGTTTACCAGAGGAGTATGCA
199596 CCTCACTAGTAATGTCTTAGTTCACTAGGAAAATATATACATGTCATCTAAATTAAACATTTGAG
1 CCTCACTAGTAATGTCTTAGTTCACTAGGAAAATATATACATGTCATCTAAATTAAACATTTGAG
* * *
199661 ACAACAACAAGAGGCACAAGAAATGCCTTAAGTTTCAACAACAAAAGGAAAGCTTTGCTAACAGT
66 ACAACAACAAGAGACACAAGAAATGCCGTAAGTTTCAACAACAAAAGGAAACCTTTGCTAACAGT
199726 GCATGTTTACCAGAGGAGTATGCA
131 GCATGTTTACCAGAGGAGTATGCA
199750 AATATTGGGT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
154 148 1.00
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.26
Consensus pattern (154 bp):
CCTCACTAGTAATGTCTTAGTTCACTAGGAAAATATATACATGTCATCTAAATTAAACATTTGAG
ACAACAACAAGAGACACAAGAAATGCCGTAAGTTTCAACAACAAAAGGAAACCTTTGCTAACAGT
GCATGTTTACCAGAGGAGTATGCA
Found at i:201316 original size:31 final size:30
Alignment explanation
Indices: 201241--201319 Score: 88
Period size: 31 Copynumber: 2.6 Consensus size: 30
201231 TGATATAATT
*
201241 TTTTA-TCCTTGAATTTTGTAATTAGGTTCA
1 TTTTAGTCCTTGAA-TTTGTAATTAAGTTCA
* **
201271 CTTTAGTATTTGAATTTGATAATTAAGTTCA
1 TTTTAGTCCTTGAATTTG-TAATTAAGTTCA
*
201302 TTTTAGTCCCTGAATTTG
1 TTTTAGTCCTTGAATTTG
201320 GATTTCGTCA
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
30 8 0.21
31 31 0.79
ACGTcount: A:0.25, C:0.10, G:0.14, T:0.51
Consensus pattern (30 bp):
TTTTAGTCCTTGAATTTGTAATTAAGTTCA
Found at i:206499 original size:26 final size:26
Alignment explanation
Indices: 206461--206575 Score: 106
Period size: 26 Copynumber: 4.4 Consensus size: 26
206451 CTTCCAGAAA
* * *
206461 TTTAGCTCATACGATCCCAAATAGAG
1 TTTAGCTCTTACGAGCCCAAACAGAG
*
206487 TTTAGCTTTTACGAGCCCAAACAGAG
1 TTTAGCTCTTACGAGCCCAAACAGAG
* * * *
206513 TTTACCTCTTACGAGCCTAGACAGAA
1 TTTAGCTCTTACGAGCCCAAACAGAG
* * *
206539 TTTAGCAT-TTACGAGCCTAGACAGAA
1 TTTAGC-TCTTACGAGCCCAAACAGAG
*
206565 TTTCGCTCTTA
1 TTTAGCTCTTA
206576 TGAGACAGAC
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
25 1 0.01
26 74 0.97
27 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
TTTAGCTCTTACGAGCCCAAACAGAG
Found at i:206574 original size:52 final size:50
Alignment explanation
Indices: 206487--206679 Score: 144
Period size: 50 Copynumber: 3.8 Consensus size: 50
206477 CCAAATAGAG
* * *
206487 TTTAGCTTTTACGAGCCCAAACAGAGTTTAC-CTCTTACGAGCCTAGACAGAA
1 TTTAGC-TTTACGAGCCTAGACAGAATTT-CGCTCTTACGAGCC-AGACAGAA
* *
206539 TTTAGCATTTACGAGCCTAGACAGAATTTCGCTCTTATGAGACAGACA-AA
1 TTTAGC-TTTACGAGCCTAGACAGAATTTCGCTCTTACGAGCCAGACAGAA
* * * * *
206589 GTATCGCTCTTACGAG-TTAGACAGAATATCGCTCTTACGAGCCAGATAGAA
1 -TTTAGCT-TTACGAGCCTAGACAGAATTTCGCTCTTACGAGCCAGACAGAA
* ** * *
206640 TATCA-CTCTTACGAATC-AGACAGAATATCGCTCATACGAG
1 T-TTAGCT-TTACGAGCCTAGACAGAATTTCGCTCTTACGAG
206680 GTAGACATGA
Statistics
Matches: 116, Mismatches: 19, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
50 62 0.53
51 19 0.16
52 35 0.30
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (50 bp):
TTTAGCTTTACGAGCCTAGACAGAATTTCGCTCTTACGAGCCAGACAGAA
Found at i:206595 original size:25 final size:25
Alignment explanation
Indices: 206518--206679 Score: 150
Period size: 25 Copynumber: 6.4 Consensus size: 25
206508 CAGAGTTTAC
* * *
206518 CTCTTACGAGCCTAGACAGAATTTAG
1 CTCTTACGAGAC-AGACAGAATATCG
* *
206544 CAT-TTACGAGCCTAGACAGAATTTCG
1 C-TCTTACGAGAC-AGACAGAATATCG
*
206570 CTCTTATGAGACAGACA-AAGTATCG
1 CTCTTACGAGACAGACAGAA-TATCG
**
206595 CTCTTACGAGTTAGACAGAATATCG
1 CTCTTACGAGACAGACAGAATATCG
* * *
206620 CTCTTACGAGCCAGATAGAATATCA
1 CTCTTACGAGACAGACAGAATATCG
206645 CTCTTACGA-ATCAGACAGAATATCG
1 CTCTTACGAGA-CAGACAGAATATCG
*
206670 CTCATACGAG
1 CTCTTACGAG
206680 GTAGACATGA
Statistics
Matches: 115, Mismatches: 15, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
24 2 0.02
25 79 0.69
26 33 0.29
27 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (25 bp):
CTCTTACGAGACAGACAGAATATCG
Found at i:206669 original size:75 final size:76
Alignment explanation
Indices: 206518--206709 Score: 198
Period size: 75 Copynumber: 2.5 Consensus size: 76
206508 CAGAGTTTAC
* * * * *
206518 CTCTTACGAGCCTAGACAGAATTTAGCAT-TTACGAGCCTAGACAGAATTTCGCTCTTATGAGAC
1 CTCTTACGAG-CTAGACAGAATATCGC-TCTTACGAGCCTAGACAGAATATCACTCTTACGAGAC
206582 AGACAAAGTATCG
64 AGACAAAGTATCG
* *
206595 CTCTTACGAGTTAGACAGAATATCGCTCTTACGAGCC-AGATAGAATATCACTCTTACGA-ATCA
1 CTCTTACGAGCTAGACAGAATATCGCTCTTACGAGCCTAGACAGAATATCACTCTTACGAGA-CA
206658 GACAGAA-TATCG
65 GACA-AAGTATCG
* * * *
206670 CTCATACGAGGTAGACATG-ATGTCGCTCTTATGAG-CTAGA
1 CTCTTACGAGCTAGACA-GAATATCGCTCTTACGAGCCTAGA
206710 GTTCAGAAAA
Statistics
Matches: 99, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
74 2 0.02
75 62 0.63
76 25 0.25
77 10 0.10
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (76 bp):
CTCTTACGAGCTAGACAGAATATCGCTCTTACGAGCCTAGACAGAATATCACTCTTACGAGACAG
ACAAAGTATCG
Found at i:206685 original size:25 final size:25
Alignment explanation
Indices: 206518--206709 Score: 149
Period size: 25 Copynumber: 7.6 Consensus size: 25
206508 CAGAGTTTAC
* * *
206518 CTCTTACGAGCCTAGACAGAATTTAG
1 CTCTTACGAG-ATAGACAGAATATCG
* *
206544 CAT-TTACGAGCCTAGACAGAATTTCG
1 C-TCTTACGAG-ATAGACAGAATATCG
* *
206570 CTCTTATGAGACAGACA-AAGTATCG
1 CTCTTACGAGATAGACAGAA-TATCG
*
206595 CTCTTACGAGTTAGACAGAATATCG
1 CTCTTACGAGATAGACAGAATATCG
** * *
206620 CTCTTACGAGCCAGATAGAATATCA
1 CTCTTACGAGATAGACAGAATATCG
206645 CTCTTACGA-ATCAGACAGAATATCG
1 CTCTTACGAGAT-AGACAGAATATCG
* * *
206670 CTCATACGAGGTAGACATG-ATGTCG
1 CTCTTACGAGATAGACA-GAATATCG
* *
206695 CTCTTATGAGCTAGA
1 CTCTTACGAGATAGA
206710 GTTCAGAAAA
Statistics
Matches: 137, Mismatches: 22, Indels: 15
0.79 0.13 0.09
Matches are distributed among these distances:
24 2 0.01
25 100 0.73
26 34 0.25
27 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (25 bp):
CTCTTACGAGATAGACAGAATATCG
Found at i:212721 original size:25 final size:25
Alignment explanation
Indices: 212693--212749 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
212683 ATTAATTTTA
*
212693 GAAAGGATTTAAT-TAAAAATAATAT
1 GAAAGGATTAAATATAAAAATAA-AT
*
212718 GAAAGGGCTTAAATATAAAAATAAAT
1 GAAA-GGATTAAATATAAAAATAAAT
*
212744 AAAAGG
1 GAAAGG
212750 GCAATTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
25 6 0.22
26 12 0.44
27 9 0.33
ACGTcount: A:0.58, C:0.02, G:0.16, T:0.25
Consensus pattern (25 bp):
GAAAGGATTAAATATAAAAATAAAT
Found at i:214988 original size:49 final size:49
Alignment explanation
Indices: 214905--215236 Score: 306
Period size: 49 Copynumber: 6.8 Consensus size: 49
214895 TACTTTTCCT
* * ** * *
214905 CATCTTTAGGGTATAAAATTTACCATTACGGCTTCAATCTTTCTCTTTA
1 CATCTCTAGGGTATAAGATTCGCCGTTACGGCTTCAATCTTTCCCTTTA
* *
214954 CATCTCTAGGGTATAAGATTCGCTGTTACAGCTTCAATCTTTCCCTTTA
1 CATCTCTAGGGTATAAGATTCGCCGTTACGGCTTCAATCTTTCCCTTTA
* * * ** *
215003 CATCTCTAGGGTACAAGATTCGGCATTGTGGCTTCAATCTTTCCCTCTA
1 CATCTCTAGGGTATAAGATTCGCCGTTACGGCTTCAATCTTTCCCTTTA
* * * * *
215052 TATCTCTAAGGTATAAGATTCACCGTTACAGCTTCAATCTTTCCCTTCA
1 CATCTCTAGGGTATAAGATTCGCCGTTACGGCTTCAATCTTTCCCTTTA
* * * * * * *
215101 TATCTCTAGGGTATAAGGTTCACCATTGCGGCTTCAACCTTTCCCTTGA
1 CATCTCTAGGGTATAAGATTCGCCGTTACGGCTTCAATCTTTCCCTTTA
** * * * *
215150 TGTCTCTAGGGTGTAAGATTCGCTGTTGCGGCTTCAATCTTT-CCTTCCA
1 CATCTCTAGGGTATAAGATTCGCCGTTACGGCTTCAATCTTTCCCTT-TA
** ** * *
215199 CATCTCTAGCATGCAAGATTCACCATTACGGCTTCAAT
1 CATCTCTAGGGTATAAGATTCGCCGTTACGGCTTCAAT
215237 TTTTACCATC
Statistics
Matches: 231, Mismatches: 51, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
48 4 0.02
49 227 0.98
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (49 bp):
CATCTCTAGGGTATAAGATTCGCCGTTACGGCTTCAATCTTTCCCTTTA
Found at i:215015 original size:98 final size:98
Alignment explanation
Indices: 214905--215236 Score: 396
Period size: 98 Copynumber: 3.4 Consensus size: 98
214895 TACTTTTCCT
* * * * * *
214905 CATCTTTAGGGTATAAAATTTACCATTACGGCTTCAATCTTTCTCTTTACATCTCTAGGGTATAA
1 CATCTCTAGGGTACAAGATTCACCATTACGGCTTCAATCTTTCCCTTTATATCTCTAGGGTATAA
*
214970 GATTCGCTGTTACAGCTTCAATCTTTCCCTTTA
66 GATTCGCTGTTACAGCTTCAATCTTTCCCTTCA
** ** * *
215003 CATCTCTAGGGTACAAGATTCGGCATTGTGGCTTCAATCTTTCCCTCTATATCTCTAAGGTATAA
1 CATCTCTAGGGTACAAGATTCACCATTACGGCTTCAATCTTTCCCTTTATATCTCTAGGGTATAA
* *
215068 GATTCACCGTTACAGCTTCAATCTTTCCCTTCA
66 GATTCGCTGTTACAGCTTCAATCTTTCCCTTCA
* * * * * * * *
215101 TATCTCTAGGGTATAAGGTTCACCATTGCGGCTTCAACCTTTCCCTTGATGTCTCTAGGGTGTAA
1 CATCTCTAGGGTACAAGATTCACCATTACGGCTTCAATCTTTCCCTTTATATCTCTAGGGTATAA
* *
215166 GATTCGCTGTTGCGGCTTCAATCTTT-CCTTCCA
66 GATTCGCTGTTACAGCTTCAATCTTTCCCTT-CA
** *
215199 CATCTCTAGCATGCAAGATTCACCATTACGGCTTCAAT
1 CATCTCTAGGGTACAAGATTCACCATTACGGCTTCAAT
215237 TTTTACCATC
Statistics
Matches: 194, Mismatches: 39, Indels: 2
0.83 0.17 0.01
Matches are distributed among these distances:
97 4 0.02
98 190 0.98
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (98 bp):
CATCTCTAGGGTACAAGATTCACCATTACGGCTTCAATCTTTCCCTTTATATCTCTAGGGTATAA
GATTCGCTGTTACAGCTTCAATCTTTCCCTTCA
Found at i:215106 original size:147 final size:146
Alignment explanation
Indices: 214905--215236 Score: 371
Period size: 147 Copynumber: 2.3 Consensus size: 146
214895 TACTTTTCCT
* * * * *
214905 CATCTTTAGGGTATAAAATTTACCATTACGGCTTCAATCTTTCTCTTTACATCTCTAGGGTATAA
1 CATCTCTA-GGTATAAGATTCACCATTACGGCTTCAATCTTTCCCTTCACATCTCTAGGGTATAA
* ** * * *
214970 GATTCGCTGTTACAGCTTCAATCTTTCCCTTTACATCTCTAGGGTACAAGATTCGGC-ATTGTGG
65 GATTCACCATTACAGCTTCAACCTTTCCCTTGACATCTCTAGGGTACAAGATTC-GCTATTGCGG
*
215034 CTTCAATCTTTCCCTCTA
129 CTTCAATCTTTCCCTCCA
* * * *
215052 TATCTCTAAGGTATAAGATTCACCGTTACAGCTTCAATCTTTCCCTTCATATCTCTAGGGTATAA
1 CATCTCT-AGGTATAAGATTCACCATTACGGCTTCAATCTTTCCCTTCACATCTCTAGGGTATAA
* * * ** ** *
215117 GGTTCACCATTGCGGCTTCAACCTTTCCCTTGATGTCTCTAGGGTGTAAGATTCGCTGTTGCGGC
65 GATTCACCATTACAGCTTCAACCTTTCCCTTGACATCTCTAGGGTACAAGATTCGCTATTGCGGC
*
215182 TTCAATCTTTCCTTCCA
130 TTCAATCTTTCCCTCCA
*
215199 CATCTCTA-GCATGCAAGATTCACCATTACGGCTTCAAT
1 CATCTCTAGGTAT--AAGATTCACCATTACGGCTTCAAT
215237 TTTTACCATC
Statistics
Matches: 152, Mismatches: 29, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
145 3 0.02
146 3 0.02
147 145 0.95
148 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (146 bp):
CATCTCTAGGTATAAGATTCACCATTACGGCTTCAATCTTTCCCTTCACATCTCTAGGGTATAAG
ATTCACCATTACAGCTTCAACCTTTCCCTTGACATCTCTAGGGTACAAGATTCGCTATTGCGGCT
TCAATCTTTCCCTCCA
Found at i:221562 original size:25 final size:24
Alignment explanation
Indices: 221534--221580 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
221524 AAATTTTAAA
* *
221534 AAAGGATTTAATTAAAAATAATATG
1 AAAGGACTTAAATAAAAA-AATATG
*
221559 AAAGGGCTTAAATAAAAAAATA
1 AAAGGACTTAAATAAAAAAATA
221581 AAAAAAAGAG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 4 0.21
25 15 0.79
ACGTcount: A:0.60, C:0.02, G:0.13, T:0.26
Consensus pattern (24 bp):
AAAGGACTTAAATAAAAAAATATG
Found at i:224228 original size:29 final size:28
Alignment explanation
Indices: 224177--224241 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 28
224167 CGCCTTAATT
* *
224177 TAATCTTAGGGATTAAATTGGTAATTTTG
1 TAAT-TTAGGGATTAAATGGGTAAATTTG
224206 TAAATTTAGGGATT-AATAGGGTAAATTTG
1 T-AATTTAGGGATTAAAT-GGGTAAATTTG
224235 TAATTTA
1 TAATTTA
224242 AGGGCTTATG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 9 0.28
29 20 0.62
30 3 0.09
ACGTcount: A:0.35, C:0.02, G:0.20, T:0.43
Consensus pattern (28 bp):
TAATTTAGGGATTAAATGGGTAAATTTG
Found at i:225080 original size:23 final size:24
Alignment explanation
Indices: 225024--225090 Score: 86
Period size: 23 Copynumber: 2.9 Consensus size: 24
225014 TGACCGACCC
*
225024 AACTCGAACCGTGGACTTTGATTG
1 AACTCGAACCGTTGACTTTGATTG
*
225048 AA-TCGGACCGTTGA-TTATGATTG
1 AACTCGAACCGTTGACTT-TGATTG
225071 AACT-GAACCGTTGACTTTGA
1 AACTCGAACCGTTGACTTTGA
225091 CTGACCCATT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
22 2 0.05
23 30 0.81
24 5 0.14
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (24 bp):
AACTCGAACCGTTGACTTTGATTG
Found at i:228430 original size:16 final size:18
Alignment explanation
Indices: 228401--228437 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
228391 TCATAATCCA
*
228401 TTTCATGTCAATTCT-AT
1 TTTCATATCAATTCTCAT
228418 TTTCATATC-ATTCTCAT
1 TTTCATATCAATTCTCAT
228435 TTT
1 TTT
228438 AGTTTCATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.22, C:0.19, G:0.03, T:0.57
Consensus pattern (18 bp):
TTTCATATCAATTCTCAT
Found at i:229404 original size:3 final size:3
Alignment explanation
Indices: 229396--229424 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
229386 TTTTACTTAT
229396 ATA ATA ATA ATA ATA ATA ATA ATA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
229425 CTTATATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:234631 original size:15 final size:15
Alignment explanation
Indices: 234594--234635 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
234584 CCAACATTTG
*
234594 ACCCGTTTGACCCAA
1 ACCCGTTTAACCCAA
234609 ACCC---TAACCCAA
1 ACCCGTTTAACCCAA
234621 ACCCGTTTAACCCAA
1 ACCCGTTTAACCCAA
234636 GCCGACCTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
12 11 0.48
15 12 0.52
ACGTcount: A:0.33, C:0.43, G:0.07, T:0.17
Consensus pattern (15 bp):
ACCCGTTTAACCCAA
Found at i:237816 original size:26 final size:26
Alignment explanation
Indices: 237761--237940 Score: 102
Period size: 26 Copynumber: 7.0 Consensus size: 26
237751 AACACACGTG
* * * * *
237761 TTTAGCTCATACTAGCCCAGATAGAG
1 TTTAGCTCTTACGAGCCAAGACAGAA
*
237787 TTTAGCTCTTACAAGCCAAGAC-GAAA
1 TTTAGCTCTTACGAGCCAAGACAG-AA
* * *
237813 TTTAACTTTTACGAGCCTAGACAGAA
1 TTTAGCTCTTACGAGCCAAGACAGAA
* *
237839 TTTCGCTCTTACGAGCC-AGACAGAG
1 TTTAGCTCTTACGAGCCAAGACAGAA
* ** * *
237864 TATCTCTCTTATGAGCC-CGACAGAAA
1 TTTAGCTCTTACGAGCCAAGACAG-AA
*
237890 TATCA-CTCTTACGAGCC-AGACAGAA
1 T-TTAGCTCTTACGAGCCAAGACAGAA
* * * *
237915 TATCGCTCTAATGAGCC-AGACAGAA
1 TTTAGCTCTTACGAGCCAAGACAGAA
237940 T
1 T
237941 ATTGCTCATA
Statistics
Matches: 121, Mismatches: 28, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
25 49 0.40
26 71 0.59
27 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (26 bp):
TTTAGCTCTTACGAGCCAAGACAGAA
Found at i:237872 original size:25 final size:25
Alignment explanation
Indices: 237821--237952 Score: 156
Period size: 25 Copynumber: 5.2 Consensus size: 25
237811 AATTTAACTT
*
237821 TTACGAGCCTAGACAGAATTTCGCTC
1 TTACGAGCC-AGACAGAATATCGCTC
* *
237847 TTACGAGCCAGACAGAGTATCTCTC
1 TTACGAGCCAGACAGAATATCGCTC
* * *
237872 TTATGAGCCCGACAGAAATATCACTC
1 TTACGAGCCAGACAG-AATATCGCTC
237898 TTACGAGCCAGACAGAATATCGCTC
1 TTACGAGCCAGACAGAATATCGCTC
* * *
237923 TAATGAGCCAGACAGAATATTGCTC
1 TTACGAGCCAGACAGAATATCGCTC
*
237948 ATACG
1 TTACG
237953 TGTAACAACC
Statistics
Matches: 89, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
25 59 0.66
26 30 0.34
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (25 bp):
TTACGAGCCAGACAGAATATCGCTC
Found at i:239224 original size:46 final size:46
Alignment explanation
Indices: 239129--239335 Score: 225
Period size: 46 Copynumber: 4.5 Consensus size: 46
239119 TTATACTGGC
* * *
239129 CAGCATGATACGTTTTACGCTCATCAGCATGATACATTTATGTTTGT
1 CAGCATGATACG-TTTACGCTCATCAGCATGATACATTTACGCTCGT
* * * *
239176 CAGCATGATACGTTTATGCTCGTTAGCATGATACATTTGCGCTCGT
1 CAGCATGATACGTTTACGCTCATCAGCATGATACATTTACGCTCGT
** * * * *
239222 CAGCATGATACGTTTGTGCTCACCAGCATGATACATTTGCACTCTT
1 CAGCATGATACGTTTACGCTCATCAGCATGATACATTTACGCTCGT
* ** * *
239268 CAGCATGATACGTTTACACTTGTCAGCATGATACGTTTACTCTCGT
1 CAGCATGATACGTTTACGCTCATCAGCATGATACATTTACGCTCGT
* *
239314 CAACATGATACGTTTACACTCA
1 CAGCATGATACGTTTACGCTCA
239336 CATCATATAT
Statistics
Matches: 134, Mismatches: 26, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
46 122 0.91
47 12 0.09
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.34
Consensus pattern (46 bp):
CAGCATGATACGTTTACGCTCATCAGCATGATACATTTACGCTCGT
Found at i:239225 original size:69 final size:69
Alignment explanation
Indices: 239129--239334 Score: 218
Period size: 69 Copynumber: 3.0 Consensus size: 69
239119 TTATACTGGC
* * * * * **
239129 CAGCATGATACGTTTTACGCTCATCAGCATGATACATTTATGTTTGTCAGCATGATACGTTTATG
1 CAGCATGATAC-ATTTACGCTCGTCAGCATGATACGTTTATGCTCGTCAGCATGATACGTTTACA
239194 CTCGTT
65 CTC-TT
* * ** * *
239200 -AGCATGATACATTTGCGCTCGTCAGCATGATACGTTTGTGCTCACCAGCATGATACATTTGCAC
1 CAGCATGATACATTTACGCTCGTCAGCATGATACGTTTATGCTCGTCAGCATGATACGTTTACAC
239264 TCTT
66 TCTT
* * * *
239268 CAGCATGATACGTTTACACTTGTCAGCATGATACGTTTACT-CTCGTCAACATGATACGTTTACA
1 CAGCATGATACATTTACGCTCGTCAGCATGATACGTTTA-TGCTCGTCAGCATGATACGTTTACA
239332 CTC
65 CTC
239335 ACATCATATA
Statistics
Matches: 110, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
68 2 0.02
69 97 0.88
70 11 0.10
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.34
Consensus pattern (69 bp):
CAGCATGATACATTTACGCTCGTCAGCATGATACGTTTATGCTCGTCAGCATGATACGTTTACAC
TCTT
Found at i:239330 original size:23 final size:23
Alignment explanation
Indices: 239129--239330 Score: 176
Period size: 23 Copynumber: 8.7 Consensus size: 23
239119 TTATACTGGC
* *
239129 CAGCATGATACGTTTTACGCTCAT
1 CAGCATGATACG-TTTACTCTCGT
* * *
239153 CAGCATGATACATTTA-TGTTTGT
1 CAGCATGATACGTTTACT-CTCGT
239176 CAGCATGATACGTTTA-TGCTCGT
1 CAGCATGATACGTTTACT-CTCGT
* * * *
239199 TAGCATGATACATTTGCGCTCGT
1 CAGCATGATACGTTTACTCTCGT
* **
239222 CAGCATGATACGTTT-GTGCTCAC
1 CAGCATGATACGTTTACT-CTCGT
* * * *
239245 CAGCATGATACATTTGCACTCTT
1 CAGCATGATACGTTTACTCTCGT
* *
239268 CAGCATGATACGTTTACACTTGT
1 CAGCATGATACGTTTACTCTCGT
239291 CAGCATGATACGTTTACTCTCGT
1 CAGCATGATACGTTTACTCTCGT
*
239314 CAACATGATACGTTTAC
1 CAGCATGATACGTTTAC
239331 ACTCACATCA
Statistics
Matches: 144, Mismatches: 30, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
23 133 0.92
24 11 0.08
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.35
Consensus pattern (23 bp):
CAGCATGATACGTTTACTCTCGT
Found at i:253138 original size:23 final size:23
Alignment explanation
Indices: 253112--253203 Score: 139
Period size: 23 Copynumber: 4.0 Consensus size: 23
253102 GGTTATACTG
253112 GTCAGCATGATACGTTTACGCTC
1 GTCAGCATGATACGTTTACGCTC
*
253135 GTCAGCATGTTACGTTTACGCTC
1 GTCAGCATGATACGTTTACGCTC
253158 GTCAGCATGATACGTTTACGCTC
1 GTCAGCATGATACGTTTACGCTC
* * * *
253181 ATTAGCATGTTACATTTACGCTC
1 GTCAGCATGATACGTTTACGCTC
253204 ACATCATATA
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 63 1.00
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.34
Consensus pattern (23 bp):
GTCAGCATGATACGTTTACGCTC
Found at i:253165 original size:46 final size:46
Alignment explanation
Indices: 253112--253203 Score: 157
Period size: 46 Copynumber: 2.0 Consensus size: 46
253102 GGTTATACTG
* *
253112 GTCAGCATGATACGTTTACGCTCGTCAGCATGTTACGTTTACGCTC
1 GTCAGCATGATACGTTTACGCTCATCAGCATGTTACATTTACGCTC
*
253158 GTCAGCATGATACGTTTACGCTCATTAGCATGTTACATTTACGCTC
1 GTCAGCATGATACGTTTACGCTCATCAGCATGTTACATTTACGCTC
253204 ACATCATATA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.34
Consensus pattern (46 bp):
GTCAGCATGATACGTTTACGCTCATCAGCATGTTACATTTACGCTC
Found at i:255862 original size:24 final size:24
Alignment explanation
Indices: 255825--255878 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
255815 AATCTGGATG
* *
255825 ATGCATAAAGGTTATAAAAATTAA
1 ATGCACAAAAGTTATAAAAATTAA
255849 ATGCACAAAAGTTATAAAAATTAA
1 ATGCACAAAAGTTATAAAAATTAA
255873 ATGCAC
1 ATGCAC
255879 TATAATTCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.54, C:0.09, G:0.11, T:0.26
Consensus pattern (24 bp):
ATGCACAAAAGTTATAAAAATTAA
Found at i:257370 original size:18 final size:18
Alignment explanation
Indices: 257347--257398 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 18
257337 AAAATGCGAG
*
257347 AAATGATGTTCACATTTT
1 AAATGATGTTCACATTTC
*
257365 AAATGACGTTCACATTTC
1 AAATGATGTTCACATTTC
*
257383 AAATGATGTTAACATT
1 AAATGATGTTCACATT
257399 GATGGAAACG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38
Consensus pattern (18 bp):
AAATGATGTTCACATTTC
Found at i:258989 original size:82 final size:82
Alignment explanation
Indices: 258862--259164 Score: 401
Period size: 82 Copynumber: 3.7 Consensus size: 82
258852 TGGACACCTA
* * * * * * *
258862 CGATGGTTGAGTTTCTGCTTACGTTATGGATTCTTATCAGCTTGTGTGAGCAGCATCATGAGTAG
1 CGATGGCTGAGTTTCTGCATACGTTGTCGATTCTCATCAGCTTGTGTGAGCAGCATCGTGAGTGG
258927 GTAATTCTGGACCATAT
66 GTAATTCTGGACCATAT
*
258944 CGATGGCTGAGTTTCTGCATACGTTGTCTATTCTCATCAGCTTGTGTGAGCAGCATCGTGAGTGG
1 CGATGGCTGAGTTTCTGCATACGTTGTCGATTCTCATCAGCTTGTGTGAGCAGCATCGTGAGTGG
*
259009 GTAATTTTGGACCATAT
66 GTAATTCTGGACCATAT
* * * *
259026 CGATGGCTGAGTTTCTGCATATGTTG-CGGATTCTAATCAGTTTGTGTGAGCAGCATCGTGAATG
1 CGATGGCTGAGTTTCTGCATACGTTGTC-GATTCTCATCAGCTTGTGTGAGCAGCATCGTGAGTG
* *
259090 GGTAATTCTAGACCGTAT
65 GGTAATTCTGGACCATAT
* * * * * *
259108 CTATGGCTGAGTTTTTACATATGTTGTGGATTCTCATCAGCTTGTTTGAGCAGCATC
1 CGATGGCTGAGTTTCTGCATACGTTGTCGATTCTCATCAGCTTGTGTGAGCAGCATC
259165 TTATACTCGT
Statistics
Matches: 195, Mismatches: 24, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
81 1 0.01
82 194 0.99
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.36
Consensus pattern (82 bp):
CGATGGCTGAGTTTCTGCATACGTTGTCGATTCTCATCAGCTTGTGTGAGCAGCATCGTGAGTGG
GTAATTCTGGACCATAT
Found at i:259512 original size:72 final size:68
Alignment explanation
Indices: 259352--259518 Score: 246
Period size: 68 Copynumber: 2.4 Consensus size: 68
259342 CAATGCTAAA
* * *
259352 CTAATTTTATCAATAACTT-TTTATGTTTGGTTTTTGGATATTGAATTTATGTCTTGTTTATGTG
1 CTAATTTTATCAAT-AGTTGTTTATGTTTGGTTTTTGAATATTGAATTTATGTCTTATTTATGTG
259416 TAAT
65 TAAT
259420 CTAATTTTATCAATAGTTGTTTATGTTTGGTTTTTGAATATTGAATTTATGTTGTACTTATTTAT
1 CTAATTTTATCAATAGTTGTTTATGTTTGGTTTTTGAATATTGAATTTA---TGT-CTTATTTAT
259485 GTGTAAT
62 GTGTAAT
*
259492 CTAGTTTTATCAATAGTTGTTTATGTT
1 CTAATTTTATCAATAGTTGTTTATGTT
259519 GAATTTATGT
Statistics
Matches: 90, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
67 3 0.03
68 43 0.48
71 3 0.03
72 41 0.46
ACGTcount: A:0.24, C:0.05, G:0.15, T:0.56
Consensus pattern (68 bp):
CTAATTTTATCAATAGTTGTTTATGTTTGGTTTTTGAATATTGAATTTATGTCTTATTTATGTGT
AAT
Found at i:259515 original size:31 final size:31
Alignment explanation
Indices: 259480--259572 Score: 81
Period size: 31 Copynumber: 3.2 Consensus size: 31
259470 GTTGTACTTA
*
259480 TTTATGTGTAATCTAGTTTTATCAATAGTTG
1 TTTATGTGTAATATAGTTTTATCAATAGTTG
* * * *
259511 TTTATGT-TGAATTTA--TGT-TC--TACTTA
1 TTTATGTGT-AATATAGTTTTATCAATAGTTG
*
259537 TTTACGTGTAATATAGTTTTATCAATAGTTG
1 TTTATGTGTAATATAGTTTTATCAATAGTTG
259568 TTTAT
1 TTTAT
259573 ATTTGATTTT
Statistics
Matches: 45, Mismatches: 10, Indels: 14
0.65 0.14 0.20
Matches are distributed among these distances:
26 15 0.33
27 1 0.02
28 4 0.09
29 4 0.09
30 1 0.02
31 20 0.44
ACGTcount: A:0.26, C:0.06, G:0.14, T:0.54
Consensus pattern (31 bp):
TTTATGTGTAATATAGTTTTATCAATAGTTG
Found at i:259521 original size:57 final size:57
Alignment explanation
Indices: 259460--259572 Score: 199
Period size: 57 Copynumber: 2.0 Consensus size: 57
259450 TTTTTGAATA
* * *
259460 TTGAATTTATGTTGTACTTATTTATGTGTAATCTAGTTTTATCAATAGTTGTTTATG
1 TTGAATTTATGTTCTACTTATTTACGTGTAATATAGTTTTATCAATAGTTGTTTATG
259517 TTGAATTTATGTTCTACTTATTTACGTGTAATATAGTTTTATCAATAGTTGTTTAT
1 TTGAATTTATGTTCTACTTATTTACGTGTAATATAGTTTTATCAATAGTTGTTTAT
259573 ATTTGATTTT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.26, C:0.06, G:0.14, T:0.54
Consensus pattern (57 bp):
TTGAATTTATGTTCTACTTATTTACGTGTAATATAGTTTTATCAATAGTTGTTTATG
Found at i:263688 original size:12 final size:12
Alignment explanation
Indices: 263671--263701 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
263661 GCCCACACAC
263671 CCGTGTGCGAGA
1 CCGTGTGCGAGA
263683 CCGTGTGCGAGA
1 CCGTGTGCGAGA
263695 CCGTGTG
1 CCGTGTG
263702 TGATTGCGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.26, G:0.42, T:0.19
Consensus pattern (12 bp):
CCGTGTGCGAGA
Found at i:264421 original size:26 final size:26
Alignment explanation
Indices: 264377--264492 Score: 94
Period size: 26 Copynumber: 4.5 Consensus size: 26
264367 CTTACAAAAA
* *
264377 TTTAGCTCATATGATCCCAGACAGAT
1 TTTAGCTCTTATGAGCCCAGACAGAT
* * * *
264403 TTTAGCTCTTATAAGCCCAGAAAAAA
1 TTTAGCTCTTATGAGCCCAGACAGAT
* *
264429 TTTAGCTCTTACGAGCCCAGATAGAAT
1 TTTAGCTCTTATGAGCCCAGACAG-AT
* *
264456 TTCA-CTCTTATGAG-CTAGACAGA-
1 TTTAGCTCTTATGAGCCCAGACAGAT
* *
264479 TATCGCTCTTATGA
1 TTTAGCTCTTATGA
264493 AAACAAAATA
Statistics
Matches: 70, Mismatches: 18, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
23 1 0.01
24 10 0.14
25 6 0.09
26 49 0.70
27 4 0.06
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.31
Consensus pattern (26 bp):
TTTAGCTCTTATGAGCCCAGACAGAT
Found at i:264506 original size:22 final size:23
Alignment explanation
Indices: 264478--264533 Score: 87
Period size: 25 Copynumber: 2.4 Consensus size: 23
264468 AGCTAGACAG
264478 ATATCGCTCTTATGA-AAACAAA
1 ATATCGCTCTTATGATAAACAAA
264500 ATATCGCTCTTATGATCTAAACAAA
1 ATATCGCTCTTATGA--TAAACAAA
264525 ATATCGCTC
1 ATATCGCTC
264534 ATGCGAGGCA
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
22 15 0.48
25 16 0.52
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (23 bp):
ATATCGCTCTTATGATAAACAAA
Found at i:264527 original size:25 final size:24
Alignment explanation
Indices: 264460--264533 Score: 91
Period size: 22 Copynumber: 3.1 Consensus size: 24
264450 TAGAATTTCA
* *
264460 CTCTTATGAGCTAGAC-AGATATCG
1 CTCTTATGA-CTAAACAAAATATCG
264484 CTCTTATGA--AAACAAAATATCG
1 CTCTTATGACTAAACAAAATATCG
264506 CTCTTATGATCTAAACAAAATATCG
1 CTCTTATGA-CTAAACAAAATATCG
264531 CTC
1 CTC
264534 ATGCGAGGCA
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
21 3 0.07
22 16 0.36
24 9 0.20
25 16 0.36
ACGTcount: A:0.36, C:0.22, G:0.12, T:0.30
Consensus pattern (24 bp):
CTCTTATGACTAAACAAAATATCG
Found at i:267532 original size:18 final size:18
Alignment explanation
Indices: 267509--267556 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
267499 TGCGAGAACT
*
267509 GATGTTCACA-TTCTAAAC
1 GATGTTAACATTTC-AAAC
*
267527 GATGTTAACATTTCAAAT
1 GATGTTAACATTTCAAAC
267545 GATGTTAACATT
1 GATGTTAACATT
267557 GATGGAAACG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
18 24 0.89
19 3 0.11
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (18 bp):
GATGTTAACATTTCAAAC
Found at i:269170 original size:82 final size:82
Alignment explanation
Indices: 269031--269331 Score: 368
Period size: 82 Copynumber: 3.7 Consensus size: 82
269021 GAACCCCTAT
* * * * *
269031 GATGGCTAAGTTTTTGCATACGTTGTGGATTTTCATCAGCTTATGTGAGCAGTATCGTGAGTGGG
1 GATGGCTGAGTTTCTGCATACGTTGTGGATTCTCATCAGCTTGTGTGAGCAGCATCGTGAGTGGG
* *
269096 TAATTCTGGACCGTGTC
66 TAATTCTGGATCGTATC
* *
269113 GATGGTTGAGTTTCTGCATACGTTGTGGATTCTCATCAGCTTGTGTTAGCAGCATCGTGAGTGGG
1 GATGGCTGAGTTTCTGCATACGTTGTGGATTCTCATCAGCTTGTGTGAGCAGCATCGTGAGTGGG
** *
269178 TAATTCAAGATCGTATA
66 TAATTCTGGATCGTATC
* * * * * *
269195 AATGGCTGAGTTTCTGTATATGTTGGGGATTCTCATCAACTTGTGTGAGTAGCATCGTGAGTGGG
1 GATGGCTGAGTTTCTGCATACGTTGTGGATTCTCATCAGCTTGTGTGAGCAGCATCGTGAGTGGG
269260 TAATTCTGGATCGTATC
66 TAATTCTGGATCGTATC
* * ** * * * *
269277 GATGGCTGAGTTTTTGCATATGTTGCAGATTCTCCTCAGATTGTGTAAGTAGCAT
1 GATGGCTGAGTTTCTGCATACGTTGTGGATTCTCATCAGCTTGTGTGAGCAGCAT
269332 TATATACTGG
Statistics
Matches: 187, Mismatches: 32, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
82 187 1.00
ACGTcount: A:0.21, C:0.14, G:0.28, T:0.37
Consensus pattern (82 bp):
GATGGCTGAGTTTCTGCATACGTTGTGGATTCTCATCAGCTTGTGTGAGCAGCATCGTGAGTGGG
TAATTCTGGATCGTATC
Found at i:269407 original size:25 final size:25
Alignment explanation
Indices: 269348--269446 Score: 92
Period size: 26 Copynumber: 4.0 Consensus size: 25
269338 CTGGTTAAAC
* * *
269348 TCTGTCTGGGCTAGTAAGAACGAA-
1 TCTGTCTGGGCTCGTAAGAGCTAAT
* *
269372 CCTATCTGGGCTCGTAAGAGCTAAT
1 TCTGTCTGGGCTCGTAAGAGCTAAT
* *
269397 TCTGTCTGGGCTCGTATGTGCTAAAT
1 TCTGTCTGGGCTCGTAAGAGCT-AAT
* * *
269423 TTTGTCTGGGCTTGTATGAGCTAA
1 TCTGTCTGGGCTCGTAAGAGCTAA
269447 ATTTTGGAGG
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
24 19 0.31
25 20 0.33
26 22 0.36
ACGTcount: A:0.21, C:0.18, G:0.27, T:0.33
Consensus pattern (25 bp):
TCTGTCTGGGCTCGTAAGAGCTAAT
Found at i:269430 original size:26 final size:26
Alignment explanation
Indices: 269376--269452 Score: 111
Period size: 26 Copynumber: 3.0 Consensus size: 26
269366 AACGAACCTA
* *
269376 TCTGGGCTCGTAAGAGCT-AATTCTG
1 TCTGGGCTCGTATGAGCTAAATTTTG
*
269401 TCTGGGCTCGTATGTGCTAAATTTTG
1 TCTGGGCTCGTATGAGCTAAATTTTG
*
269427 TCTGGGCTTGTATGAGCTAAATTTTG
1 TCTGGGCTCGTATGAGCTAAATTTTG
269453 GAGGAAGTTC
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
25 16 0.35
26 30 0.65
ACGTcount: A:0.18, C:0.16, G:0.27, T:0.39
Consensus pattern (26 bp):
TCTGGGCTCGTATGAGCTAAATTTTG
Found at i:269676 original size:72 final size:72
Alignment explanation
Indices: 269595--269763 Score: 250
Period size: 72 Copynumber: 2.3 Consensus size: 72
269585 CAATGCTAAA
* * *
269595 CTAGTTTTATCAATAACTT-TTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTGTTTT
1 CTAGTTTTATCAATAA-TTGTTTATGTTTGGTTTTTGAATATTGAATTTATGTTCTACTTATTTA
*
269659 TGTGTTAT
65 TGTGTAAT
* * *
269667 CTAGTTTTATCAATAGTTGTTTATGTTTGTTTTTTTAATATTGAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAATTGTTTATGTTTGGTTTTTGAATATTGAATTTATGTTCTACTTATTTAT
269732 GTGTAAT
66 GTGTAAT
*
269739 CTAGTATTATCAATAATTGTTTATG
1 CTAGTTTTATCAATAATTGTTTATG
269764 CTGAATTTAT
Statistics
Matches: 87, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
71 2 0.02
72 85 0.98
ACGTcount: A:0.23, C:0.07, G:0.14, T:0.57
Consensus pattern (72 bp):
CTAGTTTTATCAATAATTGTTTATGTTTGGTTTTTGAATATTGAATTTATGTTCTACTTATTTAT
GTGTAAT
Found at i:269777 original size:57 final size:57
Alignment explanation
Indices: 269708--269819 Score: 179
Period size: 57 Copynumber: 2.0 Consensus size: 57
269698 TTTTTAATAT
** *
269708 TGAATTTATGTTCTACTTATTTATGTGTAATCTAGTATTATCAATAATTGTTTATGC
1 TGAATTTATGTTCTACTTATTTACATGTAATATAGTATTATCAATAATTGTTTATGC
* *
269765 TGAATTTATGTTCTACTTATTTACATGTAATATAGTTTTATCAATAGTTGTTTAT
1 TGAATTTATGTTCTACTTATTTACATGTAATATAGTATTATCAATAATTGTTTAT
269820 ATTTGATTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 50 1.00
ACGTcount: A:0.29, C:0.08, G:0.12, T:0.52
Consensus pattern (57 bp):
TGAATTTATGTTCTACTTATTTACATGTAATATAGTATTATCAATAATTGTTTATGC
Found at i:271474 original size:12 final size:11
Alignment explanation
Indices: 271453--271579 Score: 55
Period size: 11 Copynumber: 12.2 Consensus size: 11
271443 GGTATGATAA
271453 TTTTTATAATT
1 TTTTTATAATT
271464 TTTTTACTAA--
1 TTTTTA-TAATT
271474 -TTTTAT-ATT
1 TTTTTATAATT
*
271483 TCTTTAT-ATT
1 TTTTTATAATT
271493 TTTTTATAATT
1 TTTTTATAATT
* **
271504 TTCTTACGA--
1 TTTTTATAATT
271513 -TTTTA-AA--
1 TTTTTATAATT
271520 TTTTTATAATT
1 TTTTTATAATT
*
271531 TTTTTATATTT
1 TTTTTATAATT
271542 ATATATATTATAA-T
1 -T-T-T-TTATAATT
271556 TTTTTA-AGATT
1 TTTTTATA-ATT
*
271567 TTTTTAAAATT
1 TTTTTATAATT
271578 TT
1 TT
271580 ACAATTTTTT
Statistics
Matches: 91, Mismatches: 9, Indels: 32
0.69 0.07 0.24
Matches are distributed among these distances:
7 2 0.02
8 10 0.11
9 8 0.09
10 18 0.20
11 38 0.42
12 6 0.07
13 2 0.02
14 2 0.02
15 5 0.05
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.66
Consensus pattern (11 bp):
TTTTTATAATT
Found at i:271498 original size:40 final size:38
Alignment explanation
Indices: 271453--271538 Score: 111
Period size: 40 Copynumber: 2.2 Consensus size: 38
271443 GGTATGATAA
* *
271453 TTTTTATAATTTTTTTACTAATTTTATATTTCTT-TATATT
1 TTTTTATAATTTTCTTAC-AATTTTAAATTT-TTATA-ATT
*
271493 TTTTTATAATTTTCTTACGATTTTAAATTTTTATAATT
1 TTTTTATAATTTTCTTACAATTTTAAATTTTTATAATT
271531 TTTTTATA
1 TTTTTATA
271539 TTTATATATA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
38 13 0.31
39 12 0.29
40 17 0.40
ACGTcount: A:0.27, C:0.05, G:0.01, T:0.67
Consensus pattern (38 bp):
TTTTTATAATTTTCTTACAATTTTAAATTTTTATAATT
Found at i:271524 original size:8 final size:9
Alignment explanation
Indices: 271449--271611 Score: 63
Period size: 10 Copynumber: 17.4 Consensus size: 9
271439 TTTTGGTATG
271449 ATAATTTTT
1 ATAATTTTT
271458 ATAATTTTTTT
1 ATAA--TTTTT
271469 ACTAA-TTTT
1 A-TAATTTTT
*
271478 ATATTTCTTT
1 ATAATT-TTT
*
271488 ATATTTTTTT
1 ATA-ATTTTT
271498 ATAATTTTCT
1 ATAATTTT-T
271508 -TACGA-TTTT
1 ATA--ATTTTT
271517 A-AATTTTT
1 ATAATTTTT
271525 ATAATTTTT
1 ATAATTTTT
* *
271534 -TTATATTT
1 ATAATTTTT
*
271542 AT-ATATATT
1 ATAAT-TTTT
271551 ATAATTTTT
1 ATAATTTTT
271560 -TAAGATTTTT
1 AT-A-ATTTTT
* *
271570 TTAAAATTTT
1 AT-AATTTTT
*
271580 ACAATTTTTT
1 ATAA-TTTTT
*
271590 TTATATTTTT
1 ATA-ATTTTT
271600 AT-ATTTTT
1 ATAATTTTT
271608 ATAA
1 ATAA
271612 CTTTATTGAT
Statistics
Matches: 119, Mismatches: 14, Indels: 42
0.68 0.08 0.24
Matches are distributed among these distances:
7 1 0.01
8 24 0.20
9 37 0.31
10 40 0.34
11 14 0.12
12 3 0.03
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (9 bp):
ATAATTTTT
Found at i:271535 original size:19 final size:19
Alignment explanation
Indices: 271513--271607 Score: 72
Period size: 19 Copynumber: 5.1 Consensus size: 19
271503 TTTCTTACGA
271513 TTTTAAATTTTTATAATTT
1 TTTTAAATTTTTATAATTT
* * *
271532 TTTTATATTTATAT-A-TA
1 TTTTAAATTTTTATAATTT
* *
271549 TTATAATTTTTTA-AGATTT
1 TTTTAAATTTTTATA-ATTT
* *
271568 TTTTAAAATTTTACAATTTT
1 TTTTAAATTTTTATAA-TTT
*
271588 TTTTATATTTTTAT-ATTT
1 TTTTAAATTTTTATAATTT
271606 TT
1 TT
271608 ATAACTTTAT
Statistics
Matches: 57, Mismatches: 14, Indels: 11
0.70 0.17 0.13
Matches are distributed among these distances:
17 10 0.18
18 7 0.12
19 25 0.44
20 15 0.26
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.67
Consensus pattern (19 bp):
TTTTAAATTTTTATAATTT
Found at i:271623 original size:56 final size:54
Alignment explanation
Indices: 271513--271625 Score: 138
Period size: 56 Copynumber: 2.0 Consensus size: 54
271503 TTTCTTACGA
* * *
271513 TTTTAAATTTTTATAATTTTTTTATATTTATATATATTATAATTTTTTAAGATTT
1 TTTTAAAATTTTACAATTTTTTTATATTTATATATATTATAATTTATT-AGATTT
* *
271568 TTTTAAAATTTTACAATTTTTTTTATATTTTTATATTTTTATAACTTTATT-GATTT
1 TTTTAAAATTTTACAA-TTTTTTTATATTTATATA-TATTATAA-TTTATTAGATTT
271624 TT
1 TT
271626 ATTTTACCAC
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
55 14 0.28
56 24 0.48
57 7 0.14
58 5 0.10
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (54 bp):
TTTTAAAATTTTACAATTTTTTTATATTTATATATATTATAATTTATTAGATTT
Found at i:274099 original size:26 final size:26
Alignment explanation
Indices: 274073--274397 Score: 349
Period size: 26 Copynumber: 12.5 Consensus size: 26
274063 AAGAAATTAT
* *
274073 TGAACTGGCTCGTAAGAGCGATATAT
1 TGAACTAGCTCGTAAGAGCGATATAC
*
274099 TGAACT-GACTCGTAAGAGCGATATAT
1 TGAACTAG-CTCGTAAGAGCGATATAC
*
274125 TGTACTAGCTCGTAAGAGCGATATAC
1 TGAACTAGCTCGTAAGAGCGATATAC
* * *
274151 TGAATTGGCTCGTAAGAGCGATATAT
1 TGAACTAGCTCGTAAGAGCGATATAC
*
274177 TGAACT-GACTTGTAAGAGCGATATAC
1 TGAACTAG-CTCGTAAGAGCGATATAC
274203 T-ATACTAGCTCGTAAGAGCGATATAC
1 TGA-ACTAGCTCGTAAGAGCGATATAC
* **
274229 TAAACTAGCAAGTAAGAGCGATATA-
1 TGAACTAGCTCGTAAGAGCGATATAC
* *
274254 TTATACTAGCTCGTAAGAGCGATATAT
1 TGA-ACTAGCTCGTAAGAGCGATATAC
*
274281 TGTACTAGCTCGTAAGAGCGATATAC
1 TGAACTAGCTCGTAAGAGCGATATAC
*
274307 TAAACTAGCTCGTAAGAGCGATATAC
1 TGAACTAGCTCGTAAGAGCGATATAC
* * * * *
274333 TAAATTGGCTCGTAAAAGCAATATAC
1 TGAACTAGCTCGTAAGAGCGATATAC
*
274359 TAAACTAGCTCGT--GAGTCGATATAC
1 TGAACTAGCTCGTAAGAG-CGATATAC
*
274384 T-CACTAGGCTCGTA
1 TGAACTA-GCTCGTA
274398 TGAGATAAAT
Statistics
Matches: 259, Mismatches: 29, Indels: 22
0.84 0.09 0.07
Matches are distributed among these distances:
24 6 0.02
25 19 0.07
26 230 0.89
27 4 0.02
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (26 bp):
TGAACTAGCTCGTAAGAGCGATATAC
Found at i:274209 original size:78 final size:78
Alignment explanation
Indices: 274075--274397 Score: 404
Period size: 78 Copynumber: 4.2 Consensus size: 78
274065 GAAATTATTG
* * *
274075 AACTGGCTCGTAAGAGCGATATATTGAACTGACTCGTAAGAGCGATATATTGTACTAGCTCGTAA
1 AACTAGCTCGTAAGAGCGATATATTGAACTGACTCGTAAGAGCGATATACTATACTAGCTCGTAA
*
274140 GAGCGATATACTG
66 GAGCGATATACTA
* * *
274153 AATTGGCTCGTAAGAGCGATATATTGAACTGACTTGTAAGAGCGATATACTATACTAGCTCGTAA
1 AACTAGCTCGTAAGAGCGATATATTGAACTGACTCGTAAGAGCGATATACTATACTAGCTCGTAA
274218 GAGCGATATACTA
66 GAGCGATATACTA
** * *
274231 AACTAGCAAGTAAGAGCGATATATT-ATACT-AGCTCGTAAGAGCGATATATTGTACTAGCTCGT
1 AACTAGCTCGTAAGAGCGATATATTGA-ACTGA-CTCGTAAGAGCGATATACTATACTAGCTCGT
274294 AAGAGCGATATACTA
64 AAGAGCGATATACTA
* * * * * * *
274309 AACTAGCTCGTAAGAGCGATATACTAAATTGGCTCGTAAAAGCAATATACTAAACTAGCTCGT--
1 AACTAGCTCGTAAGAGCGATATATTGAACTGACTCGTAAGAGCGATATACTATACTAGCTCGTAA
274372 GAGTCGATATACT-
66 GAG-CGATATACTA
*
274385 CACTAGGCTCGTA
1 AACTA-GCTCGTA
274398 TGAGATAAAT
Statistics
Matches: 216, Mismatches: 23, Indels: 13
0.86 0.09 0.05
Matches are distributed among these distances:
76 7 0.03
77 18 0.08
78 190 0.88
79 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (78 bp):
AACTAGCTCGTAAGAGCGATATATTGAACTGACTCGTAAGAGCGATATACTATACTAGCTCGTAA
GAGCGATATACTA
Found at i:284484 original size:52 final size:52
Alignment explanation
Indices: 284417--284564 Score: 242
Period size: 52 Copynumber: 2.8 Consensus size: 52
284407 AAGAGGTCTG
* *
284417 ATGACCAAGTGTCATCGTGAGTATATGAATCCTTTACAGATTAAACAGTCCA
1 ATGACTAAGTGTCATCGTGAGTATATGAATCCTTTACGGATTAAACAGTCCA
* * *
284469 ATGACTAAGTGTCATCGTGAGTATATGAATCCTTTATGGATTAAACGGTCCG
1 ATGACTAAGTGTCATCGTGAGTATATGAATCCTTTACGGATTAAACAGTCCA
*
284521 ATGACTAAGTGTCATCGTGAGTATATGGATCCTTTACGGATTAA
1 ATGACTAAGTGTCATCGTGAGTATATGAATCCTTTACGGATTAA
284565 GAGATCCGAT
Statistics
Matches: 89, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 89 1.00
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (52 bp):
ATGACTAAGTGTCATCGTGAGTATATGAATCCTTTACGGATTAAACAGTCCA
Found at i:286134 original size:184 final size:184
Alignment explanation
Indices: 285827--286350 Score: 806
Period size: 185 Copynumber: 2.9 Consensus size: 184
285817 TATGCGGTAC
* * * *
285827 CTCAGCCATAGATACGGTATTTGTACATATAATTGTTCCTTAAC-A-ACTACTCACACTAAGCTG
1 CTCAGCCATAGA-ACGGTATATGTACATATAACTATTCCTTAACGATGCTACTCACACTAAGCTG
285890 ACGAGAATATGCAAATCAAGCATAAATCTCAGTCATCGTAGGGCCTATAATCCATTATTGGATTC
65 ACGAGAATATGCAAATCAAGCATAAATCTCAGTCATCGTAGGGCCTATAATCCATTATTGGATTC
* *
285955 ATTTCACATTTTATTGATTCGCGA-GCTGTAGAGAATCCACAACAAATGTAGGAT
130 ATTTCACATTTTATTGACTCACGATGCTGTAGAGAATCCACAACAAATGTAGGAT
* *
286009 CTCAGCCATCGGAACGGTATCTGTACATATAACTATTCCTTAACGATGCTACTCACACTAAGCTG
1 CTCAGCCAT-AGAACGGTATATGTACATATAACTATTCCTTAACGATGCTACTCACACTAAGCTG
*
286074 ACGAGAATATGCAAATCAAGCATAAATCTCAGCCATCGTAGGGCCTATAATCCATTATTGGATTC
65 ACGAGAATATGCAAATCAAGCATAAATCTCAGTCATCGTAGGGCCTATAATCCATTATTGGATTC
* *
286139 ATTTCACATTTTATTGACTCACGATGCTGTAGAGAATCCGCGACAAATGTAGGAT
130 ATTTCACATTTTATTGACTCACGATGCTGTAGAGAATCCACAACAAATGTAGGAT
* *
286194 CTCAGCCATTAGAACGGTATATGTACATATAACTATTTCC-TAGCGATGCTAGTCACACTAAGCT
1 CTCAGCCA-TAGAACGGTATATGTACATATAACTA-TTCCTTAACGATGCTACTCACACTAAGCT
*
286258 GACGAGAATATGCAAATCAAGCATAAATCTCAGTCATCGTAGGGTCTATAATCCATTATTGGATT
64 GACGAGAATATGCAAATCAAGCATAAATCTCAGTCATCGTAGGGCCTATAATCCATTATTGGATT
* * ***
286323 CTTTTCTC-TTTTCCCGACTCACGATGCT
129 CATTTCACATTTTATTGACTCACGATGCT
286351 ACTCAAACCA
Statistics
Matches: 315, Mismatches: 21, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
182 37 0.12
183 3 0.01
184 120 0.38
185 150 0.48
186 5 0.02
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (184 bp):
CTCAGCCATAGAACGGTATATGTACATATAACTATTCCTTAACGATGCTACTCACACTAAGCTGA
CGAGAATATGCAAATCAAGCATAAATCTCAGTCATCGTAGGGCCTATAATCCATTATTGGATTCA
TTTCACATTTTATTGACTCACGATGCTGTAGAGAATCCACAACAAATGTAGGAT
Found at i:289258 original size:21 final size:21
Alignment explanation
Indices: 289232--289308 Score: 118
Period size: 21 Copynumber: 3.7 Consensus size: 21
289222 TGTTGGGCTT
*
289232 GGTTTGGATCAAAAGGGTTTG
1 GGTTTGGTTCAAAAGGGTTTG
289253 GGTTTGGTTCAAAAGGGTTTG
1 GGTTTGGTTCAAAAGGGTTTG
* *
289274 GATTTGGTTCAAAAGGGTTTA
1 GGTTTGGTTCAAAAGGGTTTG
*
289295 GGTTTAGTTCAAAA
1 GGTTTGGTTCAAAA
289309 TAGCTTGGGT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.26, C:0.05, G:0.32, T:0.36
Consensus pattern (21 bp):
GGTTTGGTTCAAAAGGGTTTG
Found at i:289319 original size:21 final size:21
Alignment explanation
Indices: 289240--289322 Score: 103
Period size: 21 Copynumber: 4.0 Consensus size: 21
289230 TTGGTTTGGA
*
289240 TCAAAAGGGTTTGGGTTTGGT
1 TCAAAAGGGTTTGGGTTTAGT
* *
289261 TCAAAAGGGTTTGGATTTGGT
1 TCAAAAGGGTTTGGGTTTAGT
*
289282 TCAAAAGGGTTTAGGTTTAGT
1 TCAAAAGGGTTTGGGTTTAGT
** *
289303 TCAAAATAGCTTGGGTTTAG
1 TCAAAAGGGTTTGGGTTTAG
289323 GCATTTTAGG
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 54 1.00
ACGTcount: A:0.25, C:0.06, G:0.31, T:0.37
Consensus pattern (21 bp):
TCAAAAGGGTTTGGGTTTAGT
Found at i:295224 original size:676 final size:675
Alignment explanation
Indices: 293933--296576 Score: 3651
Period size: 676 Copynumber: 3.9 Consensus size: 675
293923 GAGTCGTAGT
* * *
293933 CCCTTTCTAAACCAATCACACTTCTCTTTCTCATTAGTAACCATCCTAGATGCATAACAGACTAA
1 CCCTTTCTAAACCAATCACACTTCTCTTTCTCATTAGTAACCAGCCCAGATGCATAACGGACTAA
* * ** * *
293998 CCTCAGGAACTTAATCTTGTAGTCATTAACAGACATGTCTCATTGCCTTAAACTCATGAAGCCAT
66 CCTCAGGAACTCAATCTCGTAGTCATTAACAGACATGTCTCCCTGCCTTAAATTCATGAAGTCAT
* * * *
294063 CCTTACATTTATCAAGGAACTCTTCACCCACATAGGGATCTTGAAAGACCTCTCTAAAATAATCC
131 CCCTACACTTATCAAGGAACTCTTCACCCACATAGCGATCCTGAAAGACCTCTCTAAAATAATCC
* * *
294128 CAAGTAATCTGACCAGCAGGAGTAGACTCTTCCACAGTATCCCACAAATTTTGGGCCTTACCTCT
196 CAAGTAATCTGACCAGCAGGAGTAGACTCTTCCACAGTATCCCACCAATTTTGGGCCTCACCCCT
* * * *
294193 CAATAAAGAAACAACAGCCCTAACCATTTGCCTAGCAGGATAGTTCATCTTTACAAACAATCTCT
261 CAATAAAGAAACAACAGCCCTAACCTTTTGCCCAACAGGATAGTTCATCTCTACAAACAATCTCT
* * * *
294258 GAATATCCTTCAACCAATACTCAGTAACAGAAGGATCTATACCAGTTCTACCCTCAAATACCTTC
326 GAAGATCCTTCAACCAATACTCAGCAATAGAAGGATCCATACCAGTTCTACCCTCAAATACCTTC
* * * * * *
294323 ATCCTAGCAGCTATGAAATCAACAGAAATGGGCCTCCTCGGACCTTCAAACTGACCACTAACAGA
391 ATCCCAGCAGCTATAAAATCGACAGAAATGGGCCTCCTCGG-CCCTCAAACTGACCCCCAACAGA
* *
294388 TCCACGGAGTAATCTCAATAATTTTCGACTAACCATAACACTATCCAACTCCACAGTCTCGCTAT
455 TCCACGGAGTAATCTCAATAATTCTCGACTAACCGTAACACTATCCAACTCCACAGTCTCGCTAT
* *
294453 CCCTAGTGTCAAGCACATCCTCAATAGGAGCTTCCTCAGCATGTAAGTCTCCCTCAGCAACTTGC
520 CCCCAGTGTCAAGCACATCCTCAATAGGAGCTTCCTCAGCAGGTAAGTCTCCCTCAGCAACTTGC
* * * *
294518 TGACCCTCAGTACCTACAAGCAGCTCATCCTCCTTAACATAAGGCAATTCATCAACATTCACTTC
585 TGACCCTCAGTACCTACAAGCAACTCATCCTCCTTAACATAAGGTAATTCATCCACATTCACATC
*
294583 AGGCTCAGTTACAGGAGTATGGCAGC
650 AGGCTCAGTTACAGGAGTATCGCAGC
* * *
294609 CCCTTTCTAAACCAATCACACTTCTCTTTCTCATTAGTAACCAGCCTAGATGCATAATGGGCTAA
1 CCCTTTCTAAACCAATCACACTTCTCTTTCTCATTAGTAACCAGCCCAGATGCATAACGGACTAA
*
294674 CCAT-AGGAACTCAATCTCGTAGTCATTAACAGACATGTCTCCCTGCCTTAAATTCATGAAGTAA
66 CC-TCAGGAACTCAATCTCGTAGTCATTAACAGACATGTCTCCCTGCCTTAAATTCATGAAGTCA
* * * * *
294738 TCCCTACACTTATCAAGTAACTCTTCACCCACATAGTGATCCTAAAAGATCTCTCCAAAATAATC
130 TCCCTACACTTATCAAGGAACTCTTCACCCACATAGCGATCCTGAAAGACCTCTCTAAAATAATC
* * * *
294803 CCAAGTAATCTGATCAGCTGGAGTAGACTCTTCCACAGTATTCTACCAATTTTGGGCCTCACCCC
195 CCAAGTAATCTGACCAGCAGGAGTAGACTCTTCCACAGTATCCCACCAATTTTGGGCCTCACCCC
* * * * * *
294868 TCAATAAAGAAACAGCAACCCTAACCTTTTTTCCCAGCAAGATAGTTCATCTCTACAAATAATCT
260 TCAATAAAGAAACAACAGCCCTAACC-TTTTGCCCAACAGGATAGTTCATCTCTACAAACAATCT
* * * * *
294933 TTGAAGATCCTTCAACCAATACTCAGCAATAGAAGGATTCGTACTAGTTCTACCCTTAAATACCT
324 CTGAAGATCCTTCAACCAATACTCAGCAATAGAAGGATCCATACCAGTTCTACCCTCAAATACCT
* * * * *
294998 TCATCCCAGCAGCTATAAAATTGTCAGAAATGAGCCTCCTTGGCCCTTCAAACTGACCCCCAGCA
389 TCATCCCAGCAGCTATAAAATCGACAGAAATGGGCCTCCTCGGCCC-TCAAACTGACCCCCAACA
* * **
295063 GATCCACAGAGTAATCTCAATAATTCTCGACTAATCGTTGCACTATCCAACTCCACAGTCTCGCT
453 GATCCACGGAGTAATCTCAATAATTCTCGACTAACCGTAACACTATCCAACTCCACAGTCTCGCT
* * * *
295128 AT-ACCAGTGTCACGCATATCCTCAATAGGAGCTTCCTCAGCAGGTAAGTCTCCCTCAGTAACTT
518 ATCCCCAGTGTCAAGCACATCCTCAATAGGAGCTTCCTCAGCAGGTAAGTCTCCCTCAGCAACTT
* * * ** *
295192 GCTGACCCTCAGTACTTACAAGCAGCTCATCCTCCTCAACATAAGGTAATTCATCCGTATTCACC
583 GCTGACCCTCAGTACCTACAAGCAACTCATCCTCCTTAACATAAGGTAATTCATCCACATTCACA
* *
295257 TCAGGCTCAGTTATAGGAGTATCGCAAC
648 TCAGGCTCAGTTACAGGAGTATCGCAGC
* *
295285 CCCTTTCTAAACTAATCACACTTCTCTTTCTCATTAGTAACCAGCCCAGATGAATAACGGACTAA
1 CCCTTTCTAAACCAATCACACTTCTCTTTCTCATTAGTAACCAGCCCAGATGCATAACGGACTAA
* * * * * *
295350 CCTTAGGAACTCAATCTCATAGTCATTAACAAACATGTCTTCATGCCTTAAAGTCATGAAGTCAT
66 CCTCAGGAACTCAATCTCGTAGTCATTAACAGACATGTCTCCCTGCCTTAAATTCATGAAGTCAT
* *
295415 CCCTACACTTATCAAGAAACTCTTCACCCACATAGCGATCCTGAAAGACCTCTATAAAATAATCC
131 CCCTACACTTATCAAGGAACTCTTCACCCACATAGCGATCCTGAAAGACCTCTCTAAAATAATCC
* *
295480 CAAGTAATCTGACCAGCAGGACTAGACTCTTCCACAGTATCCCACCAATTTTGGGCCTCACCCTT
196 CAAGTAATCTGACCAGCAGGAGTAGACTCTTCCACAGTATCCCACCAATTTTGGGCCTCACCCCT
* * ** *
295545 CAGTAAAGAAATAGTAGCCCTAACCTTTTGCCCAACAGGAT-GATTAATCTCTACAAACAATCTC
261 CAATAAAGAAACAACAGCCCTAACCTTTTGCCCAACAGGATAG-TTCATCTCTACAAACAATCTC
* * * *
295609 TGAATATCCTTCAACCAATACTCAGCAATAGAAGGATCCATACTAGTTTTACCCTCAAATGCCTT
325 TGAAGATCCTTCAACCAATACTCAGCAATAGAAGGATCCATACCAGTTCTACCCTCAAATACCTT
* ** * * * * * ** * *
295674 AATCCCAATAGCTACAAAATCGAAAGAATTGGGCCTCCTCGGACCCTCAGACTAACTTCTAATAG
390 CATCCCAGCAGCTATAAAATCGACAGAAATGGGCCTCCTCGG-CCCTCAAACTGACCCCCAACAG
* * * *
295739 CTCCACGAAGTAATCTCAATAATTCTCGACTAACCGTAGCACTATCCAACTCCACGGTCTCGCTA
454 ATCCACGGAGTAATCTCAATAATTCTCGACTAACCGTAACACTATCCAACTCCACAGTCTCGCTA
* * * * * *
295804 TCCCCAGTGTCAGGTACATCCTCAATAGGGGCTTCCTCAGCAAGTAAGTCTCCCTCAGTAACTTA
519 TCCCCAGTGTCAAGCACATCCTCAATAGGAGCTTCCTCAGCAGGTAAGTCTCCCTCAGCAACTTG
* *
295869 CTGACCCTCAGTACCTATAGGCAACTCATCCTCCTTAACATAAGGTAATTCATCCACATTCACAT
584 CTGACCCTCAGTACCTACAAGCAACTCATCCTCCTTAACATAAGGTAATTCATCCACATTCACAT
* *
295934 CAAGCTCAATTACAGGAGTATCGCAGC
649 CAGGCTCAGTTACAGGAGTATCGCAGC
* *
295961 CCCTTTCTAAACCAATCACACTTCTCTTTCTCATTAGTAACTAGCCCAGATGCATAATGGACTAA
1 CCCTTTCTAAACCAATCACACTTCTCTTTCTCATTAGTAACCAGCCCAGATGCATAACGGACTAA
*
296026 CCTCAGGAACTCAATCTCGTAGTCATTAACAGACATGTCTCCCTACCTTAAATTCATGAAGTCAT
66 CCTCAGGAACTCAATCTCGTAGTCATTAACAGACATGTCTCCCTGCCTTAAATTCATGAAGTCAT
* * * * *
296091 CCCTACACATATGAAGGAACTCTTCACCTACATAACGATCTTGAAAGACCTCTCTAAAATAATCC
131 CCCTACACTTATCAAGGAACTCTTCACCCACATAGCGATCCTGAAAGACCTCTCTAAAATAATCC
* *
296156 CAAGTAATCTGACCAGCAAGAGTAGACTCTTCCACAGTATCCCACCAATTTTGGGCCTTACCCCT
196 CAAGTAATCTGACCAGCAGGAGTAGACTCTTCCACAGTATCCCACCAATTTTGGGCCTCACCCCT
* * * * * *
296221 CAGTAAAGAAACAATAGCCTTAACCTTTTGCCCAACAGGATAGTTTAACTCTGCAAACAATCTCT
261 CAATAAAGAAACAACAGCCCTAACCTTTTGCCCAACAGGATAGTTCATCTCTACAAACAATCTCT
* * *
296286 GAAGATCCTTCAACCAATACTCAGCAATAAAAGGATCCGTACCAGTTTTACCCTCAAATACCTTC
326 GAAGATCCTTCAACCAATACTCAGCAATAGAAGGATCCATACCAGTTCTACCCTCAAATACCTTC
* * * * * * *
296351 ATCTC-GATAGCTATAAAATCGATAGAAATGGGCCTCCTTTGACCCTCAAACTGACCCTCAATAG
391 ATCCCAG-CAGCTATAAAATCGACAGAAATGGGCCTCC-TCGGCCCTCAAACTGACCCCCAACAG
* * * *
296415 ATCCACGGAGTAATCTCAATAATTTTTGACTAACCGTAACACTATCCAACTCCACGGTCTTGCTA
454 ATCCACGGAGTAATCTCAATAATTCTCGACTAACCGTAACACTATCCAACTCCACAGTCTCGCTA
* * * * * * * *
296480 TCCCCAGTGTCAAACACATCCTTAACAAGAGCTTCCTTAACAGGTAAGTCTCCCCCAACAACTTG
519 TCCCCAGTGTCAAGCACATCCTCAATAGGAGCTTCCTCAGCAGGTAAGTCTCCCTCAGCAACTTG
*
296545 CTGACCCTCAATACCTACAAGCAACT-ATCCTC
584 CTGACCCTCAGTACCTACAAGCAACTCATCCTC
296577 AACATGAGTA
Statistics
Matches: 1731, Mismatches: 227, Indels: 21
0.87 0.11 0.01
Matches are distributed among these distances:
674 1 0.00
675 201 0.12
676 1325 0.77
677 204 0.12
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.26
Consensus pattern (675 bp):
CCCTTTCTAAACCAATCACACTTCTCTTTCTCATTAGTAACCAGCCCAGATGCATAACGGACTAA
CCTCAGGAACTCAATCTCGTAGTCATTAACAGACATGTCTCCCTGCCTTAAATTCATGAAGTCAT
CCCTACACTTATCAAGGAACTCTTCACCCACATAGCGATCCTGAAAGACCTCTCTAAAATAATCC
CAAGTAATCTGACCAGCAGGAGTAGACTCTTCCACAGTATCCCACCAATTTTGGGCCTCACCCCT
CAATAAAGAAACAACAGCCCTAACCTTTTGCCCAACAGGATAGTTCATCTCTACAAACAATCTCT
GAAGATCCTTCAACCAATACTCAGCAATAGAAGGATCCATACCAGTTCTACCCTCAAATACCTTC
ATCCCAGCAGCTATAAAATCGACAGAAATGGGCCTCCTCGGCCCTCAAACTGACCCCCAACAGAT
CCACGGAGTAATCTCAATAATTCTCGACTAACCGTAACACTATCCAACTCCACAGTCTCGCTATC
CCCAGTGTCAAGCACATCCTCAATAGGAGCTTCCTCAGCAGGTAAGTCTCCCTCAGCAACTTGCT
GACCCTCAGTACCTACAAGCAACTCATCCTCCTTAACATAAGGTAATTCATCCACATTCACATCA
GGCTCAGTTACAGGAGTATCGCAGC
Found at i:307098 original size:24 final size:24
Alignment explanation
Indices: 307069--307123 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
307059 TCAGTCACTT
307069 GAAAAAGGAAAATGAGAAAAAGA-AA
1 GAAAAA-GAAAA-GAGAAAAAGAGAA
* *
307094 GAAAAATAAAAGAGAAAAATAGAA
1 GAAAAAGAAAAGAGAAAAAGAGAA
307118 GAAAAA
1 GAAAAA
307124 AATGTTTGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 9 0.33
24 12 0.44
25 6 0.22
ACGTcount: A:0.75, C:0.00, G:0.20, T:0.05
Consensus pattern (24 bp):
GAAAAAGAAAAGAGAAAAAGAGAA
Found at i:307111 original size:13 final size:13
Alignment explanation
Indices: 307093--307126 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
307083 AGAAAAAGAA
307093 AGAAAAATAAAAG
1 AGAAAAATAAAAG
*
307106 AGAAAAATAGAAG
1 AGAAAAATAAAAG
*
307119 AAAAAAAT
1 AGAAAAAT
307127 GTTTGCTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.76, C:0.00, G:0.15, T:0.09
Consensus pattern (13 bp):
AGAAAAATAAAAG
Found at i:309832 original size:50 final size:50
Alignment explanation
Indices: 309771--309992 Score: 159
Period size: 50 Copynumber: 4.5 Consensus size: 50
309761 AAATAACTAT
*
309771 TTTACTTAAAAATCTAAACTTTTATTTCGAAATAGTTAAAAAATAAAAAC
1 TTTATTTAAAAATCTAAACTTTTATTTCGAAATAGTTAAAAAATAAAAAC
* * * ** * * **
309821 TTTATTTAAAAATTTAAACATTTTCTTT-AAAATAACTAAAAAA-CATATT
1 TTTATTTAAAAATCTAAAC-TTTTATTTCGAAATAGTTAAAAAATAAAAAC
* * * ** * **
309870 TTTATTTTAAAAATATAAAC-TTTCTTTC---TTTTTTAATGAAAACAACTAC
1 TTTA-TTTAAAAATCTAAACTTTTATTTCGAAATAGTTAA--AAAATAAAAAC
* * *
309919 TTTACTTAAAAATCCAAACTTTTATTTCGAAATAGTTAAAAAAATCAAAAC
1 TTTATTTAAAAATCTAAACTTTTATTTCGAAATAGTT-AAAAAATAAAAAC
*
309970 TTTATTTAAAAATTTAAACTTTT
1 TTTATTTAAAAATCTAAACTTTT
309993 CAAAAAAAAC
Statistics
Matches: 127, Mismatches: 34, Indels: 21
0.70 0.19 0.12
Matches are distributed among these distances:
46 4 0.03
48 23 0.18
49 18 0.14
50 43 0.34
51 34 0.27
52 3 0.02
53 2 0.02
ACGTcount: A:0.46, C:0.10, G:0.02, T:0.41
Consensus pattern (50 bp):
TTTATTTAAAAATCTAAACTTTTATTTCGAAATAGTTAAAAAATAAAAAC
Found at i:309858 original size:148 final size:144
Alignment explanation
Indices: 309661--310108 Score: 508
Period size: 148 Copynumber: 3.1 Consensus size: 144
309651 ACTTTACTTC
* * ** *
309661 AAAATCAAAAGTTTGTTTAAAAATTTAAGTTTTTTTCTTTAAAATAACTAAAAAATAGATTTTTA
1 AAAATCAAAACTTTATTTAAAAATTTAA--ACTTTTCTTTAAAATAACTAAAAAACAGATTTTTA
*
309726 TTTTTTAAAAATCTATACTTTCTTTTTTTTAATGAAAATAACTATTTTACTTAAAAATCTAAACT
64 -TTTTTAAAAATCTA-ACTTTCTTTTTTTTAATGAAAATAACTACTTTACTTAAAAATC-AAACT
309791 TTTATTTCGAAATAGTTAA
126 TTTATTTCGAAATAGTTAA
* *
309810 AAAATAAAAACTTTATTTAAAAATTTAAACATTTTCTTTAAAATAACTAAAAAACATATTTTTA-
1 AAAATCAAAACTTTATTTAAAAATTTAAAC-TTTTCTTTAAAATAACTAAAAAACAGATTTTTAT
* *
309874 TTTTAAAAATATAAACTTTCTTTCTTTTTTAATGAAAACAACTACTTTACTTAAAAATCCAAACT
65 TTTTAAAAATCT-AACTTTC-TT-TTTTTTAATGAAAATAACTACTTTACTTAAAAAT-CAAACT
309939 TTTATTTCGAAATAGTTAAA
126 TTTATTTCGAAATAGTT-AA
309959 AAAATCAAAACTTTATTTAAAAATTTAAACTTTTC--------AA--AAAAAACAGATTTTTATT
1 AAAATCAAAACTTTATTTAAAAATTTAAACTTTTCTTTAAAATAACTAAAAAACAGATTTTTATT
* * * ** *
310014 TTTAAAAATCTAA-TTT-TTTTTTTAAAAAGAAAATCACTAGGTTACTTAAAAATCAAAGCTCTT
66 TTTAAAAATCTAACTTTCTTTTTTT-TAATGAAAATAACTACTTTACTTAAAAATCAAA-CTTTT
*
310077 ATTTCGAAATTGTCTAAA
129 ATTTCGAAATAGT-T-AA
*
310095 AAAACCAAAACTTT
1 AAAATCAAAACTTT
310109 TCCCAAAATC
Statistics
Matches: 267, Mismatches: 22, Indels: 33
0.83 0.07 0.10
Matches are distributed among these distances:
134 9 0.03
135 41 0.15
136 17 0.06
137 3 0.01
138 17 0.06
139 11 0.04
140 2 0.01
146 17 0.06
147 3 0.01
148 90 0.34
149 57 0.21
ACGTcount: A:0.45, C:0.10, G:0.04, T:0.42
Consensus pattern (144 bp):
AAAATCAAAACTTTATTTAAAAATTTAAACTTTTCTTTAAAATAACTAAAAAACAGATTTTTATT
TTTAAAAATCTAACTTTCTTTTTTTTAATGAAAATAACTACTTTACTTAAAAATCAAACTTTTAT
TTCGAAATAGTTAA
Found at i:310020 original size:21 final size:20
Alignment explanation
Indices: 309996--310041 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
309986 AACTTTTCAA
309996 AAAAAAC-AGATTTTTATTTTT
1 AAAAAACTA-ATTTTT-TTTTT
*
310017 AAAAATCTAATTTTTTTTTT
1 AAAAAACTAATTTTTTTTTT
310037 AAAAA
1 AAAAA
310042 GAAAATCACT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 10 0.43
21 12 0.52
22 1 0.04
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (20 bp):
AAAAAACTAATTTTTTTTTT
Found at i:310117 original size:135 final size:138
Alignment explanation
Indices: 309858--310117 Score: 318
Period size: 135 Copynumber: 1.9 Consensus size: 138
309848 TAAAATAACT
* ** * *
309858 AAAAAACATATTTTTATTTTAAAAATATAAACTTTCTTTCTTTTTTAATGAAAACAACTACTTTA
1 AAAAAACAGATTTTTATTTTAAAAATATAAACTTTCTTTCTTTTAAAAAGAAAACAACTACGTTA
* * **
309923 CTTAAAAATCCAAACTTTTATTTCGAAATAGTTAAAAAAATCAAAACTTTATTTAAAAATTTAAA
66 CTTAAAAATCCAAACTCTTATTTCGAAATAGTTAAAAAAACCAAAACTTTATCCAAAAATTTAAA
309988 CTTTTCAA
131 CTTTTCAA
* *
309996 AAAAAACAGATTTTTATTTTTAAAAATCT-AA-TTT-TTT-TTTTAAAAAGAAAATC-ACTAGGT
1 AAAAAACAGATTTTTA-TTTTAAAAATATAAACTTTCTTTCTTTTAAAAAGAAAA-CAACTACGT
* *
310056 TACTTAAAAAT-CAAAGCTCTTATTTCGAAATTGTCTAAAAAAACCAAAACTTT-TCCCAAAAT
64 TACTTAAAAATCCAAA-CTCTTATTTCGAAATAGT-TAAAAAAACCAAAACTTTATCCAAAAAT
310118 CAAACTATTT
Statistics
Matches: 105, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
134 4 0.04
135 49 0.47
136 21 0.20
137 3 0.03
138 17 0.16
139 11 0.10
ACGTcount: A:0.45, C:0.12, G:0.04, T:0.38
Consensus pattern (138 bp):
AAAAAACAGATTTTTATTTTAAAAATATAAACTTTCTTTCTTTTAAAAAGAAAACAACTACGTTA
CTTAAAAATCCAAACTCTTATTTCGAAATAGTTAAAAAAACCAAAACTTTATCCAAAAATTTAAA
CTTTTCAA
Found at i:314924 original size:19 final size:18
Alignment explanation
Indices: 314894--314933 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
314884 AGCTAAATTA
*
314894 ACAAAAAGAAATGTAATG
1 ACAAAAAGAAATGCAATG
314912 ACAAAATAGAAATGCAATG
1 ACAAAA-AGAAATGCAATG
314931 ACA
1 ACA
314934 GTAAAATGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.60, C:0.10, G:0.15, T:0.15
Consensus pattern (18 bp):
ACAAAAAGAAATGCAATG
Found at i:316275 original size:45 final size:45
Alignment explanation
Indices: 316225--316311 Score: 174
Period size: 45 Copynumber: 1.9 Consensus size: 45
316215 TTCGTCGATA
316225 TCAATGTGACAGCCCTTCAGAATTGAGTGTAAAATGCACATATGG
1 TCAATGTGACAGCCCTTCAGAATTGAGTGTAAAATGCACATATGG
316270 TCAATGTGACAGCCCTTCAGAATTGAGTGTAAAATGCACATA
1 TCAATGTGACAGCCCTTCAGAATTGAGTGTAAAATGCACATA
316312 CGAAGTGGAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.26
Consensus pattern (45 bp):
TCAATGTGACAGCCCTTCAGAATTGAGTGTAAAATGCACATATGG
Found at i:327423 original size:262 final size:262
Alignment explanation
Indices: 326958--327481 Score: 949
Period size: 262 Copynumber: 2.0 Consensus size: 262
326948 CAGAAACAAG
* *
326958 TATGCAGATTTCAAATATGCACCTAAATCTTCTAAGTTTATAACTAAATGATACCAAAATTTCAA
1 TATGCAGATTTCAAATATGAACCTAAATCTTCTAAGTTTATAACTAAATGATACCAAAACTTCAA
* *
327023 TCAATTCACAACACTAAATATACAATTTCTCATGAGAAGGAAGCATAACATATCAATACTTATGG
66 TCAATTCACAACACAAAATATACAATTTCTCATGAGAAGGAAGCATAACATATAAATACTTATGG
* *
327088 ATTCACAAGACATTACATCTTATACATATGTGTCTATTTGAACATCAATAAAACTTACAAAAACA
131 ATTCACAAGACATTACATATTATACATATGTGTCTATTTGAACATCAACAAAACTTACAAAAACA
327153 TAAGTTCAACATTCAACAAGTCATTTTACATCTCATCTAAATCAAGTACTATTGAAGATAACAAC
196 TAAGTTCAACATTCAACAAGTCATTTTACATCTCATCTAAATCAAGTACTATTGAAGATAACAAC
327218 AT
261 AT
*
327220 TATGCAGATTTCAAATATGAACCTAAATCTTCTAAGTTTATAACTGAATGATACCAAAACTTCAA
1 TATGCAGATTTCAAATATGAACCTAAATCTTCTAAGTTTATAACTAAATGATACCAAAACTTCAA
*
327285 TCAATTTACAACACAAAATATACAATTTCTCATGAGAAGGAAGCATAACATATAAATACTTATGG
66 TCAATTCACAACACAAAATATACAATTTCTCATGAGAAGGAAGCATAACATATAAATACTTATGG
* *
327350 ATTCACAAGACATTATATATTATACATATGTGTCTATTTGAACATTAACAAAACTTACAAAAACA
131 ATTCACAAGACATTACATATTATACATATGTGTCTATTTGAACATCAACAAAACTTACAAAAACA
*
327415 TAAGTTCAACATTCAACAAGTCATTTTACATCTCATCTAAATCAAGTATTATTGAAGATAACAAC
196 TAAGTTCAACATTCAACAAGTCATTTTACATCTCATCTAAATCAAGTACTATTGAAGATAACAAC
327480 AT
261 AT
327482 CCTAGTCTCA
Statistics
Matches: 251, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
262 251 1.00
ACGTcount: A:0.43, C:0.17, G:0.08, T:0.31
Consensus pattern (262 bp):
TATGCAGATTTCAAATATGAACCTAAATCTTCTAAGTTTATAACTAAATGATACCAAAACTTCAA
TCAATTCACAACACAAAATATACAATTTCTCATGAGAAGGAAGCATAACATATAAATACTTATGG
ATTCACAAGACATTACATATTATACATATGTGTCTATTTGAACATCAACAAAACTTACAAAAACA
TAAGTTCAACATTCAACAAGTCATTTTACATCTCATCTAAATCAAGTACTATTGAAGATAACAAC
AT
Found at i:331676 original size:184 final size:185
Alignment explanation
Indices: 331245--331770 Score: 623
Period size: 184 Copynumber: 2.8 Consensus size: 185
331235 TATGCGATAC
* * ** * *
331245 CTCAGCCATCA-ATACGATATCTGTACTTATAATTGTTCCTTAACAATGCTGCTCACACTAAGCT
1 CTCAGCCATCAGA-ACGGTATCTCTAAATATAATTGTTCCTTAACGATGCTGCTCACACTAAGTT
* * ** * *
331309 GATGAGAATATGCAAATCAAGCAAAAATCTCAGTAATCGTAGAGCCTACT-ATCCATTATTGGAT
65 GACGAGAATATGCAAATCAAGCATAAATCTCAGCCATCATAG-GGCTA-TAATCCATTATTGGAT
* * ****
331373 TCATTGCACATTTTATTGAATCACGATG-TCGTAGAGAATTTGTAACAAATGCAGAAT
128 TCATTTCACATTTTATTGACTCACGATGCTCGTAGAGAATCCACAACAAATGCAGAAT
* * * * *
331430 CTCAGCCATCAGAACGGTATTTGTACATATAACTGTTCCTTAACGATGCTACTCACACTAAGTTG
1 CTCAGCCATCAGAACGGTATCTCTAAATATAATTGTTCCTTAACGATGCTGCTCACACTAAGTTG
* * *
331495 ACGAGAATATGCAAATCAAGCATAAATCTCAGCCATCATAGGGCTATAATCCACTCTTGAATTCA
66 ACGAGAATATGCAAATCAAGCATAAATCTCAGCCATCATAGGGCTATAATCCATTATTGGATTCA
* *
331560 TTTCACATTTTATTGACTCACGATGCT-GTAGAGAATCCACAACAAATGTAGGAT
131 TTTCACATTTTATTGACTCACGATGCTCGTAGAGAATCCACAACAAATGCAGAAT
* * * * *
331614 CTCAGCCATCGGAATGGTATCTCTAAATATAATTGTTCCCTAATGATGCTGCTCATACTAAGTTG
1 CTCAGCCATCAGAACGGTATCTCTAAATATAATTGTTCCTTAACGATGCTGCTCACACTAAGTTG
*
331679 ACGAGAATATGCAAATCAAGCATAAATCTC-GTCCATTATAGGGTCTATAATCCATTATTGGATT
66 ACGAGAATATGCAAATCAAGCATAAATCTCAG-CCATCATAGGG-CTATAATCCATTATTGGATT
* * **
331743 CTTTTCTCA-TTTCCTGACTCACGATGCT
129 CATTTCACATTTTATTGACTCACGATGCT
331771 ACTCACACCA
Statistics
Matches: 294, Mismatches: 42, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
183 2 0.01
184 174 0.59
185 117 0.40
186 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (185 bp):
CTCAGCCATCAGAACGGTATCTCTAAATATAATTGTTCCTTAACGATGCTGCTCACACTAAGTTG
ACGAGAATATGCAAATCAAGCATAAATCTCAGCCATCATAGGGCTATAATCCATTATTGGATTCA
TTTCACATTTTATTGACTCACGATGCTCGTAGAGAATCCACAACAAATGCAGAAT
Found at i:334046 original size:107 final size:108
Alignment explanation
Indices: 333832--334028 Score: 245
Period size: 107 Copynumber: 1.8 Consensus size: 108
333822 TCAATTAATT
* * * *
333832 TGACTAGTGCTGGGCACATATCCGTCGGCTTATCCAAATAGCGTTAGGCGCAACATCATTGATTT
1 TGACTAGTGCTGGGCACATATCCATCGGATTATCCAAATAGCGTGAGGCGCAACATCATTGATTA
* * *
333897 ATCCAACTAGAGTTGGGCTCATTATCTATATCCTCAGTTTAAC
66 ATCCAACTAGAGCTGGGCTCACTATCTATATCATCAGTTTAAC
* * * * * * *
333940 TGACTAGTGTTGGGCACATATTCATC-GATTATCCGACTAGCGCTGA-GCGCAATATCGTTGGTT
1 TGACTAGTGCTGGGCACATATCCATCGGATTATCCAAATAGCG-TGAGGCGCAACATCATTGATT
334003 AATCCAACTAGAGCTGGGCTCACTAT
65 AATCCAACTAGAGCTGGGCTCACTAT
334029 TAATATTATC
Statistics
Matches: 75, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
107 50 0.67
108 25 0.33
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.30
Consensus pattern (108 bp):
TGACTAGTGCTGGGCACATATCCATCGGATTATCCAAATAGCGTGAGGCGCAACATCATTGATTA
ATCCAACTAGAGCTGGGCTCACTATCTATATCATCAGTTTAAC
Found at i:334052 original size:107 final size:108
Alignment explanation
Indices: 333833--334052 Score: 241
Period size: 107 Copynumber: 2.0 Consensus size: 108
333823 CAATTAATTT
* * * *
333833 GACTAGTGCTGGGCACATATCCGTCGGCTTATCCAAATAGCGTTAGGCGCAACATCATTGATTTA
1 GACTAGTGCTGGGCACATATCCATCGGATTATCCAAATAGCGTGAGGCGCAACATCATTGATTAA
* * * *
333898 TCCAACTAGAGTTGGGCTCATTATCTATATCCTCAGTTTAACT
66 TCCAACTAGAGCTGGGCTCACTATCTATATCATCAGTTTAACC
* * * * * * *
333941 GACTAGTGTTGGGCACATATTCATC-GATTATCCGACTAGCGCTGA-GCGCAATATCGTTGGTTA
1 GACTAGTGCTGGGCACATATCCATCGGATTATCCAAATAGCG-TGAGGCGCAACATCATTGATTA
*
334004 ATCCAACTAGAGCTGGGCTCACTAT-TAATATTATCAAG-TTAACC
65 ATCCAACTAGAGCTGGGCTCACTATCT-ATATCATC-AGTTTAACC
334048 GACTA
1 GACTA
334053 CCGATGGGTG
Statistics
Matches: 93, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
106 1 0.01
107 66 0.71
108 26 0.28
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (108 bp):
GACTAGTGCTGGGCACATATCCATCGGATTATCCAAATAGCGTGAGGCGCAACATCATTGATTAA
TCCAACTAGAGCTGGGCTCACTATCTATATCATCAGTTTAACC
Found at i:336405 original size:17 final size:16
Alignment explanation
Indices: 336358--336412 Score: 78
Period size: 15 Copynumber: 3.5 Consensus size: 16
336348 TACTATTTAA
336358 ATAATA-TAAAATATT
1 ATAATATTAAAATATT
*
336373 TTAATATTAAAA-ATT
1 ATAATATTAAAATATT
336388 ATAATATTAAAAATATT
1 ATAATATT-AAAATATT
336405 ATAATATT
1 ATAATATT
336413 CATTTAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
15 15 0.43
16 9 0.26
17 11 0.31
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
ATAATATTAAAATATT
Found at i:337148 original size:17 final size:19
Alignment explanation
Indices: 337112--337149 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
337102 AATGTTTACA
337112 TTAGAATAGTATTATATTT
1 TTAGAATAGTATTATATTT
*
337131 TTAGTATAG-ATT-TATTT
1 TTAGAATAGTATTATATTT
337148 TT
1 TT
337150 TAATGTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.39
18 3 0.17
19 8 0.44
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.58
Consensus pattern (19 bp):
TTAGAATAGTATTATATTT
Found at i:337681 original size:3 final size:3
Alignment explanation
Indices: 337673--337698 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
337663 AGATCACTCA
337673 TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TT
337699 TCTGGTACCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:346627 original size:31 final size:32
Alignment explanation
Indices: 346580--346651 Score: 85
Period size: 31 Copynumber: 2.3 Consensus size: 32
346570 ATTTTTATTT
* *
346580 TGTTTT-TTTAACTTTAAAACTATAAAAA-AA
1 TGTTTTATTTAAATTTAAAACTAAAAAAATAA
**
346610 TGTTTTATTTAAATTTAAATTTAAAAAAATAA
1 TGTTTTATTTAAATTTAAAACTAAAAAAATAA
*
346642 TATTTTATTT
1 TGTTTTATTT
346652 GGGGGAACCA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
30 6 0.17
31 18 0.51
32 11 0.31
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (32 bp):
TGTTTTATTTAAATTTAAAACTAAAAAAATAA
Found at i:350845 original size:17 final size:17
Alignment explanation
Indices: 350814--350846 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
350804 CAAACACTTA
350814 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
350831 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
350847 AGTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:351443 original size:20 final size:20
Alignment explanation
Indices: 351409--351496 Score: 83
Period size: 20 Copynumber: 4.5 Consensus size: 20
351399 GTTTTGATGA
*
351409 ATATA-TTTACTTAAAGTAT
1 ATATACTTTGCTTAAAGTAT
*
351428 ATGTACTTTGCTTAAAGTAT
1 ATATACTTTGCTTAAAGTAT
* * *
351448 TTATACATTGTTTAAAGTAT
1 ATATACTTTGCTTAAAGTAT
*
351468 AAATACTTTAG-TTAAAGTAT
1 ATATACTTT-GCTTAAAGTAT
351488 CA-ATACTTT
1 -ATATACTTT
351497 TAACAAAGTA
Statistics
Matches: 57, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
19 4 0.07
20 51 0.89
21 2 0.04
ACGTcount: A:0.38, C:0.08, G:0.09, T:0.45
Consensus pattern (20 bp):
ATATACTTTGCTTAAAGTAT
Found at i:351938 original size:17 final size:19
Alignment explanation
Indices: 351899--351938 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 19
351889 TTCATTAAAC
*
351899 TTTCATCATATTACACTTA
1 TTTCATCATATTACAATTA
351918 -TTCA-CATATTA-AATTA
1 TTTCATCATATTACAATTA
351934 TTTCA
1 TTTCA
351939 ATTATAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 4
0.79 0.04 0.17
Matches are distributed among these distances:
16 4 0.21
17 11 0.58
18 4 0.21
ACGTcount: A:0.35, C:0.17, G:0.00, T:0.47
Consensus pattern (19 bp):
TTTCATCATATTACAATTA
Found at i:353929 original size:27 final size:27
Alignment explanation
Indices: 353863--353966 Score: 97
Period size: 27 Copynumber: 3.9 Consensus size: 27
353853 AGAACAAATT
* *
353863 ATTGCTCATTT-GTGCCAAATTCAGAAA
1 ATTGCTC-TTTCGAGCCAAATACAGAAA
* *
353890 ATGGCT-TAATCGAGCCAAATACAGAAA
1 ATTGCTCT-TTCGAGCCAAATACAGAAA
* *
353917 ATTGCTCTTTCGAGCCAGATATAGAATA
1 ATTGCTCTTTCGAGCCAAATACAGAA-A
*
353945 A-TGCTCTTTCGAGCCAGATACA
1 ATTGCTCTTTCGAGCCAAATACA
353967 TAGTATTTCT
Statistics
Matches: 64, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
25 1 0.02
26 1 0.02
27 59 0.92
28 3 0.05
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (27 bp):
ATTGCTCTTTCGAGCCAAATACAGAAA
Found at i:359660 original size:215 final size:215
Alignment explanation
Indices: 357017--365523 Score: 9062
Period size: 215 Copynumber: 39.6 Consensus size: 215
357007 GCCTCGTTTC
* * * * *
357017 ACTTCAGTTTCTTAAAGTATTCAAGGCGATCCATTCTTTCGAGCTATTTTTCGAACATTCCATGC
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
* * * * **
357082 TCGTGAAATCGCTTCATTTGGTTTTAATAGTTTGTCATTTTATAAA-AAAATTTGGTCTTTGAAT
66 TCG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * * * * *
357146 TAGAAACTTATTTATGTGAGAATTTTCTCTCTCTCTTGGTTCTTGAAC-AAATTTTCGGACTTCT
130 TAAAAACTTATTTACGTGAGAATTGT-T-TCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGT
* *
357210 CAAACTTTTAAGAGTTCTTTTATA
192 CAAACATTTACGAGTTCTTTTATA
* * * * * *
357234 ACTTCGATTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCAA-TTTTCTAAACATTCCTTG
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATG
* * * *
357298 CTCGGGAAATCGCATAATTTGGTCTAAATATTTTGTCATTTTGTACACAACTTTTGGTCTTTAAA
65 CTC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* *
357363 TTAAAAACTTATTTACGTGAGAATTGTTTCACTCTTGGTTCTTGGACGAACTTCTAAACTTGTCA
129 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCA
* *
357428 AACTTTTATGAGTTCTTTTATA
194 AACATTTACGAGTTCTTTTATA
* *
357450 ACTTCGGTTCCTTAAAGTATTCAAAATGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
* * * *
357515 TCGGGAAATCGCATCTTTTCGTCTAAATAGTTTGTCA-TTT-T-AACAGCTTTTGGTATTTGAAT
66 TC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * ** * *
357577 TAAAAAGTTATTTACGTGAGATTTGTTTCACTTTTGGTTCTTTCACGAACTTCTTAACTTATCAA
130 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAA
* * *
357642 ACATTTATGATTTTTTTTATA
195 ACATTTACGAGTTCTTTTATA
* * * * * * *
357663 ACTTC-GTTCCTTAAAGTATTGAGGATGATTCGTTCCTTCAAGCAATTTTTTGAACATTCCATGC
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
* * * * *
357727 TTGGAAATCGCTTCATTTGGTTTAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTAAATT
66 TCGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* ** * * * * **
357792 AAAAACTTATTGACGTGAGAATCATTTCTCGCTTGGTTATTGGCCAAACTTCCAAACTTGTCAAA
131 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
*
357857 CATTTAAGAGTTCTTTTATA
196 CATTTACGAGTTCTTTTATA
* * * * ** *
357877 ACTTCGGTTCC-AAATAGTATTCAAGACGATCCACTCTTTCGACCAATTTTAGGGAACGTTCCAT
1 ACTTCGGTTCCTTAA-AGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TCGAACATTCCAT
* * *
357941 GCTCAGGAAATCGAATCATTTGGTCTAAATAGTTTGTCATTTTGTAATA-AACTTTTTGTCTTTA
64 GCTC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-ACAACTTTTGGTCTTTG
* *
358005 AATTAAAAA--TATTTTCGTGAGAATTGTTTCTCTCTTGGTTCTT-GCCAGAACTT-TCGAACTT
127 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTCT-GAACTT
* * * *
358066 GTTATAC-TTTATGAGTTCTTTTAGA
190 GTCAAACATTTACGAGTTCTTTTATA
* * * * * *
358091 ACTTCGGTTCCTTATAGTATTGAAGACGATCCATTTCTTTGAGCAAATTTCCGAACATTCCATGC
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
* * *
358156 TCGGGAAATCGCATTATTTGGTCTAAATATTTTGTCATTTTGTACAA-AACTTTTTGTCTTT-AG
66 TC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA-AACAACTTTTGGTCTTTGA-
* * * * ** *
358219 ATTAAAAACTTATTTATGTGAGAATCGTTTCGCTCTTGGTTATTGGACGAACTTCCAAACTTGTA
128 ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTC
*
358284 AAACATTTAAGAGTTCTTTTATA
193 AAACATTTACGAGTTCTTTTATA
* * *
358307 ACTTCGATTCCTGAAAGTATTCAAGATGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
* * *
358372 TCGGGAAATCGCATCATTTCGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTTGTATTTGAAT
66 TC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * ** *
358437 TAAAAACTTATTTACTTGAGAATTGTTTCACTCTTGGTTCTTTCACGAACTTCTGAACTTATCAA
130 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAA
358502 ACATTTACGAGTTCTTTTATA
195 ACATTTACGAGTTCTTTTATA
* * * *
358523 ACTT-TGTTCCTTAAAGTATTGC-GGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCGTG
1 ACTTCGGTTCCTTAAAGTATT-CAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATG
* *
358586 CTCAGAAATCGCATCATTTGGTCT-AATA-TTTGTCATTTTGTAAACAATTTTTGGTCTTTGAAT
65 CTCGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
** * * * *
358649 TAAAAACTTATTGGCGTGAGAATTGTTTCTCTCTTGATTATTGGCCAAACTTCTGAACTTGTCAA
130 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAA
* *
358714 ACATTTAAGACTTCTTTTATA
195 ACATTTACGAGTTCTTTTATA
* ** * * * *
358735 ACTTCGATTCCAGAGAA-TATTCAAGATGATCCATTCCTTCGATCAATTTTACGAACATTACATG
1 ACTTCGGTTCCTTA-AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATG
* ** *
358799 CTCGGGAAATCACATTGTTTGGTCTAAATAGTTTGTCATTTTGTAATA-AACTTTTTGTCTTTGA
65 CTC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-ACAACTTTTGGTCTTTGA
* *
358863 ATTAAAAAC--AGTTT-CGTGAGAATTGTTTCTCTCTTGGTTCTT-GCCAGAACTTCCGAACTCT
128 ATTAAAAACTTA-TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTCTGAACT-T
* * *
358924 -TTATAA-TTTTATGAGTTCTTTTATA
190 GTCA-AACATTTACGAGTTCTTTTATA
* ** *
358949 ACTTCGGTTCCTTAAAGTATTGAAGACGATCCATTCCTTC-AGGCAATTTTTTAAACACTCCATG
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA-GCAATTTTTCGAACATTCCATG
* * * * *
359013 CTCGAGAAATCACATCATTTGGTTTAAATATTTTGTCATTTTGTATAA-AACTTTTTGTCTTTAA
65 CTCG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA-AACAACTTTTGGTCTTTGA
* * * *
359077 ATTAAAAACTTATTTACGTGAGAAATGTTTCTTTCTAGGTTCTTGGACGAACTTCTAAACTTGTC
128 ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTC
* *
359142 AAACATTTAAGAGTTTTTTTATA
193 AAACATTTACGAGTTCTTTTATA
* * * * *
359165 ACTTCGGCTCCTAAAAGCATTCAAGACTATCCATTCCTTCGAACAA-TTTTCTGAACATTCCATG
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATG
* * * * *
359229 CTCGGGAAATAGTATCATTTGGTTTAAATAGTTTGTCATTTTGTAATA-ATCTTTTTGTCTTTGA
65 CTC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-ACAACTTTTGGTCTTTGA
* * * * *
359293 ATTAAAAAC--ATTTTCGTGAGAATTGTTTCTCTCTTCGTTATTGG-CAGAACTTCCGAACTTAT
128 ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTCTGAACTTGT
* * * *
359355 TATAC-TTTAAAGAGTTCTTTTGTA
192 CAAACATTT-ACGAGTTCTTTTATA
* * * * *
359379 ACTTCGCTTCTTTAAAGTATTCAAGACGATCCATTCTTTCGAGCAATTTTTTGAACATTACATGC
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
* * * *
359444 TCAGGAAATCACATCATTGGGTCTAAATAGTTTTTAATTTTGTAAACAACTTTTGGTCTTTGAAT
66 TC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * *
359509 AAAAAACTGATTCT-TGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAATTTCAGAACTTGTCA
130 TAAAAACTTATT-TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCA
* * *
359573 AACTTTTACGAATTCTTTCATA
194 AACATTTACGAGTTCTTTTATA
* * * *
359595 ACTTC-GTTCCTTAAAGTATTCAAGGCGATCCATTCCTTCAAGCTATTTTCCGAACATTCCATGC
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
* * * * *
359659 TCGTGAAATCGCTTCATTTGGTTTTAATAGTTTGTCATTTTGTAAAAAAGATTTT-GTCTTTGAA
66 TCG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-CTTTTGGTCTTTGAA
* * ** * * * *
359723 TTAGAAGCTTATTTATATGAGAA-T-TTTCTCTACTTGGTTCTTGAACGAACTTTTGGACTTCTC
129 TTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAACTTCTGAACTTGTC
* *
359786 AAACATATATGAGTTCTTTTATA
193 AAACATTTACGAGTTCTTTTATA
* * * * * * *
359809 ACTTCAGTT-CTTGAGAGTATTCAAGACAATCCATTCATTCGA-CAAATTTTCTAAACATTCCTT
1 ACTTCGGTTCCTT-AAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCAT
* * **
359872 GCTCGGGAGATC-CAATCATTTGGTCTAAATAGTTTGTCATTTTTTTTCACAACTTTTGGTCTTT
64 GCTC-GGAAATCGC-ATCATTTGGTCTAAATAGTTTGTCA-TTTTGTAAACAACTTTTGGTCTTT
* *
359936 AAATTAAAAA-TTATTTACGTGAGAATTGTTTCTGTCTTGGTTCTTGGACGAACTTCTGAACTTG
126 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTG
* * * *
360000 TCAACCATTTGCGAG---ATTTCTA
191 TCAAACATTTACGAGTTCTTTTATA
* * * * * * *
360022 ACTTCGGTTCCTTATAGTATTCAGGATGATCAATTCCTTCAAGAAATTTTCCGAACATTCCATGA
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATG-
* * * * * * **
360087 TTGGGAAATCGAATCATTTGGTCTAAATGGTTTATCATTTTGTAAAAAAAATTTGGTCTTTGAAT
65 CTCGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * ** * * **
360152 TAAAAATTTATTTACATGAGAATTGTTTCTCTCTTTCTTCTTGGTCTAACTTCCAAACTTGTCAA
130 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAA
*
360217 ACTTTTACGAGTTC-TTTATA
195 ACATTTACGAGTTCTTTTATA
* * * * * * * *
360237 ACTTTGGTTCCTTAAAGTACTT-AAGATGACCCATTCCTTTGAGCAATTTTCCTAGCATTCCACG
1 ACTTCGGTTCCTTAAAGTA-TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATG
** * * * * * *
360301 CTCCAAAAATTGCAACATTTAGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTAGTCTTTAAA
65 CT-CGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* *
360366 TTAAAAACTTATTTACGTGAG-ATTGTTTTCTCTCTTGGTTCTT-GACGAACTTCCGAAGTTGTC
129 TTAAAAACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTC
*
360429 AAACTTTTACGAGTTCTTTTATA
193 AAACATTTACGAGTTCTTTTATA
* * * * * * * * *
360452 ATTTCAGTTGCTTAAAGTACTCAAGTCTATCCATTCCTTCGAGAAATTTTCCAAACATTCCATGC
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
* * * * * *
360517 TCGGTCAATCGCACCATTTGGTCTAAATAGTTTATCATTTTGTAAACAATTTTTGGTCATTAAAT
66 TCGG-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * * * *
360582 TAAAAACTAATTTACATGAGAATTTTTTGTGTCTTTGTTCTTTGACGAACTTC-GAAACTTGTCA
130 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTG-AACTTGTCA
* *
360646 AACTTTTAAGAGTTCTTTTATA
194 AACATTTACGAGTTCTTTTATA
* * * * * * *
360668 ACTTCGATTCCTGAGAGTATTCAAGACAATGCATTCCTTCGAGCAA-TTTTCGAACATTCCTTTC
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
*
360732 TCAGGAAATCGCATTATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
66 TC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * ** *
360797 TAAAAACTTATTTACGTAAGAATTGTTTCTCTCTT-GTTCTGGGATGAAGTTCCAAACTTGTTAA
130 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAA
360861 ACATTTACGAGTTCTTTTATA
195 ACATTTACGAGTTCTTTTATA
* * * *
360882 ACTTTGGTTCCTTGAAGTATTCAAGATGATCCATTCCTTCGAGCAA-ATTTCGAACATTCCATGC
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
* * * *
360946 TTAGGGAATCACATCATTTGGTCTAAATAGTTTGTCAATTTT-TAAACAACTTTTGCAT-TTTGA
66 -TCGGAAATCGCATCATTTGGTCTAAATAGTTTGTC-ATTTTGTAAACAACTTTTG-GTCTTTGA
* * ** * * *
361009 ATTAAAAACTAATTTACGTGAGAATTGTTT-TACACTTTATTCTTAGACAAACTTCTGAACTTCT
128 ATTAAAAACTTATTTACGTGAGAATTGTTTCT-CTCTTGGTTCTTGGACGAACTTCTGAACTTGT
* *
361073 CAAACATTTAAGAGTTCTTTTATT
192 CAAACATTTACGAGTTCTTTTATA
* * * * *
361097 ACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCAACCAATTTTCCGAACATTCCATGC
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
* * ** *
361162 TTGAGAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTG-AAATCAACTTTTTATCTTTAAA
66 TCG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-CAACTTTTGGTCTTTGAA
* * *
361226 TTAAAAACTTATTTATGTGAGAATTGTTTCACTCTTGGTTCTTGGATGAACTT-TCGAACTTGTC
129 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTC
*
361290 AAACTTTTACGAGTTCTTTTATA
193 AAACATTTACGAGTTCTTTTATA
* * *
361313 ACTTCGGTTCTTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTTTGAACATTCCATGC
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
* * * *
361378 TTGGGAAATTGCATCATTTCGTCTAAATTAGTTTGTCATTTTGTAAACAACTTTTGGTATTTGAA
66 -TCGGAAATCGCATCATTTGGTCTAAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* * ** *
361443 TTAAAAACTTATTTACGTGAAAATTGTTTCACTCTTGGTTCTTTCACGAACTTCTGAACTTATCA
129 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCA
361508 AACATTTACGAGTTCTTTTATA
194 AACATTTACGAGTTCTTTTATA
* * * *
361530 ACTTC-GTTCCTTAAAGTATTGAGGATGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGC
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
*
361594 TCGGAAAT-GACATCATTTGGTCTAAATAGCTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
66 TCGGAAATCG-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * * * *
361658 TAAAAAATTATTGACGTGAGAATT-ATT-TCTCTTGGTTATTGGCCAAACTTC-GAAACTTATCA
130 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTG-AACTTGTCA
*
361720 AACATTTAAGAGTTCTTTTATA
194 AACATTTACGAGTTCTTTTATA
* * * * * * * *
361742 ACTCCGATTCCATAGAGTATTCAAGATGATCCATTCCTTCGACCAATTTTACAAACATTCCATGC
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
* * * * * *
361807 TCGGGAAATCACATCGTTTTGTCTAAATTGTTTGTCATTTTATAATA-AACTTTTTGTCTTTGAA
66 TC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-ACAACTTTTGGTCTTTGAA
* * *
361871 TTAAAAAC--ATTTTCGTGAGAATTGTTTCTCTCTTGGTTCTTGG-CAGAACTTCTAAACTTGTT
129 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTCTGAACTTGTC
* * * *
361933 ATTA-TTTTATGAGTTCTTTTGTA
193 A-AACATTTACGAGTTCTTTTATA
* * * * * * * *
361956 ACTTCGGTTCTTTAAAGTATTTAAGATGATCCATTCTTTCGAGTAATTTTTTGAACATTTCATAC
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
* * * * * *
362021 TTTGGAAATCACATCATTAGGTTTGAATAGTTT-TTATTTTGTAAACAACTTTTGGTCTTTGAAT
66 -TCGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * * * *
362085 AAAAAACTGATTAATGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAATTTCAGAACTTGTCAA
130 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAA
* *
362150 ACTTTTACTAGTTCTTTTATA
195 ACATTTACGAGTTCTTTTATA
* * ** *
362171 TCTTCGGTTCCTTAAAGTATTCAA-AGCGATTCATTCCTTCGAGTTATTTTTCGAACATTTCATG
1 ACTTCGGTTCCTTAAAGTATTCAAGA-CGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATG
* *
362235 CTCGTGAAATCGCTTCATTTGGT-TTAATAGTTTGTCATTTTGTAATA-AACTTTTGGTCTTTGA
65 CTCG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-ACAACTTTTGGTCTTTGA
* * * * * * * *
362298 ATTAGAAACTTATTTATGTGAGGATCT-TCTCTCTCTTGGTTCTTGAATGAACTT-TCGGACTTC
128 ATTAAAAACTTATTTACGTGAGAAT-TGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTG
*
362361 TCAAACATTTAAGAGTTCTTTTATA
191 TCAAACATTTACGAGTTCTTTTATA
* * * * * * * *
362386 ACTTCGATTCCTGAGAGTATTCAAGATGATTCATTCCTTCGACCAATTTTTCAAACATTCCTTGC
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
* * * *
362451 TCAGGAAATCGCATCATTTGGTCTAAATATTTTGTCGTTTTGTACACAACTTTTGGT-TTTAAAA
66 TC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTT-GAA
* * * * *
362515 TTAAAAACTTATTGATGTGAGAATTGTTTCTGTCTTGGTTCTTGGACGAACTTCTAAACTTGTTA
129 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCA
* * *
362580 AACATTTGCGAGTTTTTTTCTA
194 AACATTTACGAGTTCTTTTATA
* * * * * * *
362602 ACTTCGGTTCCTTAAAGTATTCAAGATGATCAATTTCTTCGAGAAATTTTTCGAACACTCCAAGA
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
362667 TCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-ATACTTTTGGTCTTTGAA
66 TC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-ACTTTTGGTCTTTGAA
* * ** ** * * *
362731 ATAAAAATTTATTTAAATGAGAATTGTTTCTCTCTTTCTTCTTGGTCAAACTTCCGAACTTGTCA
129 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCA
*
362796 AAC-TGTTACGAGTTC-TTTATG
194 AACAT-TTACGAGTTCTTTTATA
* * *
362817 ACTTTGGTTCCTTAAAGTACTT-AAGACGATCCATTCCTTCGAGCAATTTTT-GAGCATTCCACG
1 ACTTCGGTTCCTTAAAGTA-TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATG
** * * *
362880 CTCGAGAAATAACATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAACTTTTAGTCTTTAAA
65 CTCG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* * *
362945 TTAAAAACTTATTTACGTGAGAA-TGTTTTCTCTCTTGGTTCTTAGACGAACTTCCGAAGTTGTC
129 TTAAAAACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTC
* *
363009 AAACTTTTAAGAGTTCTTTTATA
193 AAACATTTACGAGTTCTTTTATA
* * * * *
363032 ACTTCAGTTGCTTAAAGTACTCAAGTCTATCCATTCCTTCGAGCAA-TTTTCTGAACATTCCATG
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATG
* * * *
363096 CTCGAGAAATCGCACCATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAATTTTGGTCTTTAAA
65 CTCG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
** * * *
363161 TTAAAAAACAAATTTACATGAG-ATT-TTGTCTCT-TT-GTTCTTTGAAGAACTTC-GAAACTTG
129 TT-AAAAACTTATTTACGTGAGAATTGTT-TCTCTCTTGGTTCTTGGACGAACTTCTG-AACTTG
** **
363221 TCAAAC-TTCTAAAAGTTCTTCGATA
191 TCAAACATT-TACGAGTTCTTTTATA
* * * * * * * *
363246 ACTTTGATTCCTGAGAGTATTCAAGATGATGCATTCCTTCGAGCAATTTTTCGAACATTCCTTTC
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
* *
363311 TCAAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
66 TC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * ** * *
363376 TAAAAACTTATTTACGTAAGAATTGTTTCTCTCTT-GTTCTGGGACGAAGTTCCAAACATGTTAA
130 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAA
*
363440 ACATTTACAAGTTCTTTTATA
195 ACATTTACGAGTTCTTTTATA
* * * * * * * *
363461 ACTTTGGTTCCTTAAAGAATTCAAGATGATCCATTCCTCCGTGCATTTTTTCTAACATTCTATGC
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
* * * * * * * *
363526 TTAGGGAATCACATCATTTGCTCTAAATAGTTTGTTAATTTTTTAAACAACTTTTGCAT-TTTTA
66 -TCGGAAATCGCATCATTTGGTCTAAATAGTTTG-TCATTTTGTAAACAACTTTTG-GTCTTTGA
* * * * ** * ** *
363590 ATTAAAAACTAATTTACATGAGAATTGTTTTTCACTTTATCCTTGGATAAACTTCTGAACTTCTC
128 ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTC
* * *
363655 AAACATTTAAGAGTTTTTTTATT
193 AAACATTTACGAGTTCTTTTATA
* * * * * * * *
363678 ACTTCGGTTCCTGAGAGTATTCAAGATGATCCATTCCTTCAACCAATTTTCCAAAAATTCCATGC
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
* * * * * *
363743 TTGAGAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTGTAATCAGCTTTTTGTCTTTAAAT
66 TCG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* ** *
363808 AAAAAACTTATTTACAAGAGAATTGTTTCACTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAA
130 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAA
* * *
363873 ACTTTTTACGAGTACTTTTGTA
195 AC-ATTTACGAGTTCTTTTATA
* * * *
363895 ACTTCGGTTCCTTAAAATATACAAGACGGTCCATTCCTTCGAGCAATTTTTTGAACAATTCCATG
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAAC-ATTCCATG
* * *
363960 CTCGAGAAATCGCATCATTTCGTCTAAATTGTTTGTCATTTTGTAAACAACTTTTGGTATTTGAA
65 CTCG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* * * * * *
364025 TTAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGTTTATTGGCCAAACTTCTGAACTTGTAA
129 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCA
*
364090 AACATTTAAGAGTTCTTTTATA
194 AACATTTACGAGTTCTTTTATA
* * *
364112 ACTTCAGTT-C-TAGAGAGTATTCAAGACGATCCATTCCTTCGACCAATTTTACGAACATTCCAT
1 ACTTCGGTTCCTTA-A-AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCAT
* * * * * *
364175 GCTTGAGAAATCACATCGTTTCGTCTAAATAGTTTGTCATTTTGCAATA-AACTTTTTGTCTTTG
64 GCTCG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-ACAACTTTTGGTCTTTG
* * * **
364239 AATTAAAAAC--ATTTTCGTGAGAATTGTTTCTCTTTTGGTTCTTGCTA-GAACTTCCAAACTTG
127 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG-GACGAACTTCTGAACTTG
* * * *
364301 TTATACTTTTATGAGTTCTTTTATA
191 TCAAACATTTACGAGTTCTTTTATA
* *
364326 ACTTCGGTTCCTTAAAGTATTGAAGAAGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
* * * * * *
364391 TCGGTAAATCACATCATTTGGTCTAAATATTTTTTTCATTTTGTATAA-AACTTTTTGTTTTTAA
66 TCGG-AAATCGCATCATTTGGTCTAAATA-GTTTGTCATTTTGTA-AACAACTTTTGGTCTTTGA
* * * * *
364455 ATTAAAAAATTATTTACGTGAAAACTGTTTCACTCTTAGTTCTTGGACGAACTTCTGAACTTGTC
128 ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTC
*
364520 AAACTTTTACGAGTTCTTTTATA
193 AAACATTTACGAGTTCTTTTATA
* * * * *
364543 ACTTTGGTTCCTTAAAGTATTCAACATGATCCATTCCTTCGAGCAA-TTTTCGATCATTGCATGC
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
** * * * * *
364607 TCAAAAAATCGAATCATTTCGTATAAATAGTTTGTCATTTTGTAAACAACTTTTGGTATTTGAGT
66 TC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* ** *
364672 TAAAAACTTATTTACGTGAGAATTGTTTCACTC-TGGTTCTTTTCACGAACTTCTGAACTTATCA
130 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TTGGACGAACTTCTGAACTTGTCA
*
364736 AACATTTATGAGTTCTTTTATA
194 AACATTTACGAGTTCTTTTATA
* * *
364758 ACTTC-GTTCCTTAAAGTATTGAGGACGATCAATTCCTTCGAGCAATTTTTCGAACATTCCATGC
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
* *
364822 TCGAAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
66 TCGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * *
364887 AAAAACTTATTGATGTGAGAATTGTTTCTCTCTTGGTTATTGGCCAAACTTCTGAACTTGTCAAA
131 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
*
364952 CATTTAAGAGTTCTTTTATA
196 CATTTACGAGTTCTTTTATA
** * * * * *
364972 ACTTCGGTTCCAGAGAGTATTCAAGATGTTCCATTCCTTCGAGCAGTTTTTTGAACATTCCATGC
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
* * * * * *
365037 TCGGAAATCACATCATTTGGTCTAAATAGCTTGCCATTTTGTAAACAACTATTGTTCTTTGAATG
66 TCGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * *
365102 AAAAATTTATTAACGTGAAAATTGTTTCTCTCTTGGTTATTGGCCAAACTTTTGAACTTGTCAAA
131 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
365167 CATTT-CAGAGTTCTTTTATA
196 CATTTAC-GAGTTCTTTTATA
* * ** * * * *
365187 ACTTCGATTTCAGAGAGTGTTCAAGATGATCCATTCCTTCGACCAATTTTTCGAACATTCCATGC
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
* *
365252 TCGGGAAATCTCATCGTTTGGTCTAAATAGTTTGTCATTTTGTAATA-AACTTTCT-GTCTTTGA
66 TC-GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-ACAACTTT-TGGTCTTTGA
* *
365315 ATTAAAAAC--ATTTTCGTGAGAATTGTTTCTCTCTTGGTTCTTGCTA-GAACTT-TCGAACTTG
128 ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG-GACGAACTTCT-GAACTTG
* * * *
365376 TTATACTTTTATGAGTTCTTTTATA
191 TCAAACATTTACGAGTTCTTTTATA
* * * ** *
365401 ACTTCGGTCCCTTAAAGTATTGAAGACGATCCATTCCTTCGAGCAATTTTTCGATCATTTTATCC
1 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
* * *
365466 TCGAGAAATCGCATCATTTGGTCTAAATATTTTTTCATTTTGTAAAAAACTTTTGGTC
66 TCG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
365524 ATCCCTAGAT
Statistics
Matches: 6924, Mismatches: 1168, Indels: 399
0.82 0.14 0.05
Matches are distributed among these distances:
211 31 0.00
212 260 0.04
213 493 0.07
214 1813 0.26
215 1831 0.26
216 1685 0.24
217 645 0.09
218 166 0.02
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (215 bp):
ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
TCGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
CATTTACGAGTTCTTTTATA
Found at i:366636 original size:43 final size:43
Alignment explanation
Indices: 366589--366715 Score: 148
Period size: 43 Copynumber: 3.0 Consensus size: 43
366579 GACATTGAGA
* * *
366589 GGAACATTGTTTCCTAAAATTAAAAGTATGAGATTGATTG-TGT
1 GGAACATTGTTTCCTAATATTGAAAGTATGTGATTGATTGAT-T
* * *** *
366632 GGAACATTGTTTCTTATTATTGAAAGTATGTGAACAAATGATT
1 GGAACATTGTTTCCTAATATTGAAAGTATGTGATTGATTGATT
*
366675 GGAACATTGTTTCCTAATATTGATAGTATGTGATTGATTGA
1 GGAACATTGTTTCCTAATATTGAAAGTATGTGATTGATTGA
366716 GAGACATGCC
Statistics
Matches: 67, Mismatches: 16, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
43 66 0.99
44 1 0.01
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.39
Consensus pattern (43 bp):
GGAACATTGTTTCCTAATATTGAAAGTATGTGATTGATTGATT
Found at i:367622 original size:19 final size:19
Alignment explanation
Indices: 367598--367637 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
367588 AACACTTATA
367598 AAAAAACAACATATTTAAT
1 AAAAAACAACATATTTAAT
367617 AAAAAACAACATATTTAAT
1 AAAAAACAACATATTTAAT
367636 AA
1 AA
367638 CACTCATGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.65, C:0.10, G:0.00, T:0.25
Consensus pattern (19 bp):
AAAAAACAACATATTTAAT
Found at i:367880 original size:96 final size:96
Alignment explanation
Indices: 367772--367999 Score: 312
Period size: 96 Copynumber: 2.4 Consensus size: 96
367762 GAAGGCATTT
* * * * *
367772 AACAAATATGCATTTAACAAACAAAACATTTAGTAATGCATATTATTAAACAAAGATGCATTTAA
1 AACAAAGATGCATTTAACAAACAAAACACTTAATAATGCAGACTATTAAACAAAGATGCATTTAA
* * *
367837 CAAACCAAATAGTTAATAATGCAGATTACTA
66 CAAACAAAACACTTAATAATGCAGATTACTA
*
367868 AACAAAGATGCATTTAACAAACAAAACACTTAATGATGCAGACTATTAAACAAAGATGCATTTAA
1 AACAAAGATGCATTTAACAAACAAAACACTTAATAATGCAGACTATTAAACAAAGATGCATTTAA
* * * *
367933 TAAACAAAACACTTAATGATGCATATTATTA
66 CAAACAAAACACTTAATAATGCAGATTACTA
*
367964 AACAAAGATGCATTTAACAAAAAAAAAACACTTAAT
1 AACAAAGATGCATTTAAC--AAACAAAACACTTAAT
368000 GAAGCATAAA
Statistics
Matches: 116, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
96 101 0.87
98 15 0.13
ACGTcount: A:0.52, C:0.14, G:0.08, T:0.26
Consensus pattern (96 bp):
AACAAAGATGCATTTAACAAACAAAACACTTAATAATGCAGACTATTAAACAAAGATGCATTTAA
CAAACAAAACACTTAATAATGCAGATTACTA
Found at i:368014 original size:48 final size:48
Alignment explanation
Indices: 367772--368016 Score: 275
Period size: 48 Copynumber: 5.1 Consensus size: 48
367762 GAAGGCATTT
* * * *
367772 AACAAATATGCATTTAAC-AAACAAAACATTTAGTAATGCATATTATTA
1 AACAAAGATGCATTTAACAAAACAAAACACTTAATGATGCATA-TATTA
* * * * * *
367820 AACAAAGATGCATTTAAC-AAACCAAATAGTTAATAATGCAGATTACTA
1 AACAAAGATGCATTTAACAAAACAAAACACTTAATGATGCATA-TATTA
*
367868 AACAAAGATGCATTTAAC-AAACAAAACACTTAATGATGCAGACTATTA
1 AACAAAGATGCATTTAACAAAACAAAACACTTAATGATGCATA-TATTA
*
367916 AACAAAGATGCATTTAA-TAAACAAAACACTTAATGATGCATATTATTA
1 AACAAAGATGCATTTAACAAAACAAAACACTTAATGATGCATA-TATTA
* * *
367964 AACAAAGATGCATTTAACAAAAAAAAAACACTTAATGAAGCATA-AATA
1 AACAAAGATGCATTTAAC-AAAACAAAACACTTAATGATGCATATATTA
368012 AACAA
1 AACAA
368017 CTTTATTTAT
Statistics
Matches: 175, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
48 153 0.87
50 22 0.13
ACGTcount: A:0.53, C:0.14, G:0.09, T:0.25
Consensus pattern (48 bp):
AACAAAGATGCATTTAACAAAACAAAACACTTAATGATGCATATATTA
Done.