Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014835.1 Kokia drynarioides strain JFW-HI SEQ_129877, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 538739
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Warning! 268 characters in sequence are not A, C, G, or T
File 2 of 2
Found at i:374295 original size:48 final size:48
Alignment explanation
Indices: 374237--374462 Score: 303
Period size: 48 Copynumber: 4.7 Consensus size: 48
374227 TTAATGCAAG
*
374237 GCATTTAACAAACAAAACATTTAATAATGCATATTACTAAACAAAGAT
1 GCATTTAACAAACAAAACACTTAATAATGCATATTACTAAACAAAGAT
* * * *
374285 GAATTTAACAAACAAAACAGTTAATAATGCAGATTACTAAATAAAGAT
1 GCATTTAACAAACAAAACACTTAATAATGCATATTACTAAACAAAGAT
* * *
374333 GCATTTAACAAACAAAACACTTAATGATGCAAATTATTAAACAAAGAT
1 GCATTTAACAAACAAAACACTTAATAATGCATATTACTAAACAAAGAT
* * *
374381 GCATTTAACAAACAAAACACTTAATGATGCATA-TATTAAACAAAAAT
1 GCATTTAACAAACAAAACACTTAATAATGCATATTACTAAACAAAGAT
*
374428 GCATTTAACAAAAAAAAAACACTTAATGAA-GCATA
1 GCATTTAAC--AAACAAAACACTTAAT-AATGCATA
374463 AATAAACAAC
Statistics
Matches: 161, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
47 22 0.14
48 118 0.73
49 20 0.12
50 1 0.01
ACGTcount: A:0.54, C:0.14, G:0.08, T:0.25
Consensus pattern (48 bp):
GCATTTAACAAACAAAACACTTAATAATGCATATTACTAAACAAAGAT
Found at i:377145 original size:215 final size:216
Alignment explanation
Indices: 376183--377858 Score: 1919
Period size: 215 Copynumber: 7.9 Consensus size: 216
376173 AATGGACCCA
* * * * *
376183 ATAACTTTGGTTTCTTAAAGTATTCAAGACGATCCATTCTTTCGAGCAATTTCTCTAACATTCAA
1 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCAA
* * * * * *
376248 TGGTTGGGAAATCGCATCATTTGGTCTAAATAATATGAAATTTTGTAAACAACCTTTGGTCTTTG
66 TGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTAATTTTGTAAACAACTTTTGGTCTTTG
* * *
376313 AATTAAAATCTTATTTACGTAAGAATTGTTTCTCTCTT-GTTCTT-G--G-A----CGAACTT-C
131 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGT
*
376368 CAAACTTTTTCGAGTTCTTTT
196 CAAACTTTTACGAGTTCTTTT
* *** * *
376389 ATAACTTCGATTCCTTAAAGTATTCAAGATTCTCCATTCCTTTGAGCAATTTTTCAAACATTTCA
1 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACA-TTCA
* * *
376454 A-GCTCAGGAAAT-GCATCATTTGGTTTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTT
65 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTAATTTTGTAAACAACTTTTGGTCTTT
* * * * *
376517 GAATTAAAAATTTATTTACGTGAGAATTGCTTCTCTCCTGGTTCTTGGTCGAACTTTCGAACTTC
130 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTG
*
376582 TCAAACATTTACGAGTTCTTTT
195 TCAAACTTTTACGAGTTCTTTT
** * * *
376604 ATAACTTCTATTCC-TAAGAGTATTCAAGAAGATCCATTGCTTCGACCAATTTTAT-GAACATCT
1 ATAACTTCGGTTCCTTAA-AGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TCGAACAT-T
** * * * *
376667 CAA-GCTCGGGAAATCATATCA-TAGAGTCTAAATAGTTTTTAACTTTATAAACAACTTTTGGTC
63 CAATGCTCGGGAAATCGCATCATTTG-GTCTAAATAGTTTGTAATTTTGTAAACAACTTTTGGTC
* * *
376730 TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGATATTGGCCGAACTTCCGAAC
127 TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAAC
*
376795 TTGTCAATCTTTTACGAGTTCTTTT
192 TTGTCAAACTTTTACGAGTTCTTTT
* *
376820 ATAA--------CCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTTCGAACATTCCA
1 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCAA
* * * *
376877 TGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTGAACAACTTTTTGTCTTTG
66 TGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTAATTTTGTAAACAACTTTTGGTCTTTG
* * * * * *
376942 TATTAAAAGCATATTTACGTGAGAATTGTTTATCTCTTGGTTCTTGGCCAAACTTTAGAACTTGT
131 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGT
* *
377007 CATACTTTTATGAGTTCTTTT
196 CAAACTTTTACGAGTTCTTTT
* * * *
377028 ATAACTTCGGTTCCTTAAAGTTTTCAAGACGATCCACT-ATTCGAGCAATTTTTCGAACATTAAA
1 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCAA
* * *
377092 TGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTCTCATTTTGTAAACAACTTTTGGCCTTTG
66 TGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTAATTTTGTAAACAACTTTTGGTCTTTG
* * * *
377157 AATTAAAAACTTATTTACATGAGAATTGTTTCTATCTTGGTTTTTGGCCGAACTTCCGAACTTGT
131 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGT
* * *
377222 CAAACATTTATGAGTTCTTTA
196 CAAACTTTTACGAGTTCTTTT
* * * *
377243 ATAACTTCAGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAGTTTTTCGAACATTCCA
1 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCAA
* * * * * * *
377308 TGCTTGGGAAATCACATTATTTGGCCTAAATAGTTAGTCATCTTGTAAACAACTTTTGGTCTTAT
66 TGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTAATTTTGTAAACAACTTTTGGTCTT-T
** * * * * * *
377373 -AATTAAAAGTTTATTTACGTGAGAATTGTTCCCCTCTT-TTTCTTAGACGAACTTAT-GAGCTT
130 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT-TCGAACTT
* *
377435 CTCACACTTTTACGAGTTCTTTT
194 GTCAAACTTTTACGAGTTCTTTT
* * **
377458 ATAACTTCGATTCC-TAAGAGTAGTCAAGACGATCCATTCCTTTTA-CAAATTTTAT-GAACATT
1 ATAACTTCGGTTCCTTAA-AGTATTCAAGACGATCCATTCCTTCGAGC-AATTTT-TCGAACATT
* * * * *
377520 CCATGCTTGAGAAATCGCATCA-TTGAGTCTAAATAGTTTTTAACTTTGTAAACAACTTTTGGTC
63 CAATGCTCGGGAAATCGCATCATTTG-GTCTAAATAGTTTGTAATTTTGTAAACAACTTTTGGTC
* * *
377584 TTTGAATTAAAAACTTATTTACGCGAGAATTGTTTCTCTCTTGGTTCTTGGCCTAAC-TTCTTAA
127 TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC-GAA
* *
377648 CTTGTCAAACTTTTACGAATTCCTTT
191 CTTGTCAAACTTTTACGAGTTCTTTT
* * *
377674 ATAAATTCGGTTCCTTAAAGTATTCAAGACGATCCATTCATTCGAGCAATTTTTCAAACATT-AC
1 ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCA-
* * * *
377738 ATGCTCGGGAAATCACATCATTCGATCTAAATAGTTTGAAATTTTGTAAACAACTTTTGGTCTTT
65 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTAATTTTGTAAACAACTTTTGGTCTTT
* * *
377803 GAATTAAAAA-TTTTTTGACATGAGAATTGTTTCTCTCTTTGTTCTTGGCCGAACTT
130 GAATTAAAAACTTATTT-ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT
377859 CCTGACGTGA
Statistics
Matches: 1237, Mismatches: 187, Indels: 81
0.82 0.12 0.05
Matches are distributed among these distances:
205 79 0.06
206 64 0.05
207 10 0.01
208 170 0.14
209 6 0.00
210 1 0.00
214 20 0.02
215 446 0.36
216 433 0.35
217 8 0.01
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (216 bp):
ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCAA
TGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTAATTTTGTAAACAACTTTTGGTCTTTG
AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGT
CAAACTTTTACGAGTTCTTTT
Found at i:377519 original size:431 final size:429
Alignment explanation
Indices: 376201--377858 Score: 2006
Period size: 431 Copynumber: 3.9 Consensus size: 429
376191 GGTTTCTTAA
* * *
376201 AGTATTCAAGACGATCCATTCTTTCGAGCAATTTCTCT-AACATTCAATGGTTGGGAAATCGCAT
1 AGTATTCAAGACGATCCATTC-TTCGAGCAATTT-TATGAACATTCAATGCTCGGGAAATCGCAT
* * ** * * *
376265 CATTTG-GTCTAAATAATATGAAATTTTGTAAACAACCTTTGGTCTTTGAATTAAAATCTTATTT
64 CA-TTGAGTCTAAATAGTTTTTAACTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTT
* * *
376329 ACGTAAGAATTGTTTCTCTCTT-GTTCTT-G--G-A----CGAACTT-CCAAACTTTTTCGAGTT
128 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGAGTT
*** *
376384 CTTTTATAACTTC-GATTCCTTAAAGTATTCAAGATTCTCCATTCCTTTGAGCAATTTTTCAAAC
193 C-TTTATAACTTCAG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAAC
* * * * *
376448 ATTTCAAGCTCAGGAAAT-GCATCATTTGGTTTAAATAGTTTGTCATTTTGTAAACAACTTTTGG
256 ATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGG
* * * *
376512 TCTTTGAATTAAAAATTTATTTACGTGAGAATTGCTTCTCTCCTGGTTCTTGGTCGAACTTTCGA
321 TCTTTGAATTAAAAATTTATTTACGTGAGAATTGTTTCTCT-CTTGTTCTTGGCCGAACTTTAGA
* *
376577 ACTTCTCAAACATTTACGAGTTCTTTTATAACTTCTATTCCTAAG
385 ACTTCTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTAAG
* * **
376622 AGTATTCAAGAAGATCCATTGCTTCGACCAATTTTATGAACATCTCAA-GCTCGGGAAATCATAT
1 AGTATTCAAGACGATCCATT-CTTCGAGCAATTTTATGAACAT-TCAATGCTCGGGAAATCGCAT
* *
376686 CATAGAGTCTAAATAGTTTTTAACTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTA
64 CATTGAGTCTAAATAGTTTTTAACTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTA
* * *
376751 CGTGAGAATTGTTTCTCTCTTGGATATTGGCCGAACTTCCGAACTTGTCAATCTTTTACGAGTTC
129 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGAGTTC
* * *
376816 TTT-T-A--T-A--ACCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTTCGAACATT
194 TTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATT
* * * *
376874 CCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTGAACAACTTTTTGTCT
259 CCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCT
* *** * *
376939 TTGTATTAAAAGCATATTTACGTGAGAATTGTTTATCTCTTGGTTCTTGGCCAAACTTTAGAACT
324 TTGAATTAAAAATTTATTTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGCCGAACTTTAGAACT
* * * *
377004 TGTCATACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAA-
388 TCTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCC-TAAG
* * * *
377046 AGTTTTCAAGACGATCCACTATTCGAGCAATTTT-TCGAACATTAAATGCTCGGGAAATCGCATC
1 AGTATTCAAGACGATCCATTCTTCGAGCAATTTTAT-GAACATTCAATGCTCGGGAAATCGCATC
* * * *
377110 ATTTG-GTCTAAATAGTTTCTCATTTTGTAAACAACTTTTGGCCTTTGAATTAAAAACTTATTTA
65 A-TTGAGTCTAAATAGTTTTTAACTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTA
* * * * *
377174 CATGAGAATTGTTTCTATCTTGGTTTTTGGCCGAACTTCCGAACTTGTCAAACATTTATGAGTTC
129 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGAGTTC
* * *
377239 TTTAATAACTTCAGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAGTTTTTCGAACAT
194 TTT-ATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACAT
* * * * *
377304 TCCATGCTTGGGAAATCACATTATTTGGCCTAAATAGTTAGTCATCTTGTAAACAACTTTTGGTC
258 TCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
* * * * * * *
377369 TTAT-AATTAAAAGTTTATTTACGTGAGAATTGTTCCCCTCTTTTTCTTAGACGAAC-TTATGAG
323 TT-TGAATTAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGTTCTTGGCCGAACTTTA-GAA
*
377432 CTTCTCACACTTTTACGAGTTCTTTTATAACTTCGATTCCTAAG
386 CTTCTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTAAG
* ** * * *
377476 AGTAGTCAAGACGATCCATTCCTTTTA-CAAATTTTATGAACATTCCATGCTTGAGAAATCGCAT
1 AGTATTCAAGACGATCCATT-CTTCGAGC-AATTTTATGAACATTCAATGCTCGGGAAATCGCAT
377540 CATTGAGTCTAAATAGTTTTTAACTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTA
64 CATTGAGTCTAAATAGTTTTTAACTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTA
* * ** *
377605 CGCGAGAATTGTTTCTCTCTTGGTTCTTGGCCTAACTTCTTAACTTGTCAAACTTTTACGAATTC
129 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGAGTT-
* * *
377670 CTTTATAAATTCGGTTCCTTAAAGTATTCAAGACGATCCATTCATTCGAGCAATTTTTCAAACAT
193 CTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACAT
* * * **
377735 TACATGCTCGGGAAATCACATCATTCGATCTAAATAGTTTGAAATTTTGTAAACAACTTTTGGTC
258 TCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
*
377800 TTTGAATTAAAAATTT-TTTGACATGAGAATTGTTTCTCTCTTTGTTCTTGGCCGAACTT
323 TTTGAATTAAAAATTTATTT-ACGTGAGAATTGTTTCTCTC-TTGTTCTTGGCCGAACTT
377859 CCTGACGTGA
Statistics
Matches: 1050, Mismatches: 146, Indels: 70
0.83 0.12 0.06
Matches are distributed among these distances:
420 4 0.00
421 120 0.11
422 13 0.01
423 210 0.20
424 148 0.14
425 5 0.00
426 3 0.00
428 2 0.00
429 8 0.01
430 83 0.08
431 434 0.41
432 19 0.02
433 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (429 bp):
AGTATTCAAGACGATCCATTCTTCGAGCAATTTTATGAACATTCAATGCTCGGGAAATCGCATCA
TTGAGTCTAAATAGTTTTTAACTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACG
TGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
TATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCC
ATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTT
GAATTAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGTTCTTGGCCGAACTTTAGAACTTCT
CAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTAAG
Found at i:378015 original size:17 final size:17
Alignment explanation
Indices: 377995--378027 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
377985 TTTAAGGACT
377995 TTTTAATTTTA-TTTAAG
1 TTTT-ATTTTAGTTTAAG
378012 TTTTATTTTAGTTTAA
1 TTTTATTTTAGTTTAA
378028 TAAGTGTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (17 bp):
TTTTATTTTAGTTTAAG
Found at i:379672 original size:19 final size:19
Alignment explanation
Indices: 379626--379679 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
379616 AAGTTTGTAA
379626 AAAAGAAGAAAAAAATTCG
1 AAAAGAAGAAAAAAATTCG
*
379645 AATTA-AAGAAAAAAGATTC-
1 AA-AAGAAGAAAAAA-ATTCG
379664 AAAAGAAGAAGAAAAA
1 AAAAGAAGAA-AAAAA
379680 ATTTCGAGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
18 1 0.03
19 19 0.66
20 9 0.31
ACGTcount: A:0.70, C:0.04, G:0.15, T:0.11
Consensus pattern (19 bp):
AAAAGAAGAAAAAAATTCG
Found at i:382435 original size:50 final size:50
Alignment explanation
Indices: 382351--382484 Score: 139
Period size: 50 Copynumber: 2.7 Consensus size: 50
382341 TGACATCCAT
* * * *
382351 TAACTCTCATGATTAGTTAAGTTTGCATCGTAAATAATGA-CATGCATTAAG
1 TAACTCACATG-TTAGTTAAATATGCATCATAAATAAT-ATCATGCATTAAG
* ** *
382402 TAACTTACATGTTAGTTAAATATGCATCATAAATCCTATCATGCATTATG
1 TAACTCACATGTTAGTTAAATATGCATCATAAATAATATCATGCATTAAG
*
382452 TAACTCCCATGTTAGTT-AA-ATGCATCATTAAAT
1 TAACTCACATGTTAGTTAAATATGCATCA-TAAAT
382485 CAAGTCACAC
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
48 8 0.11
49 8 0.11
50 46 0.65
51 9 0.13
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.37
Consensus pattern (50 bp):
TAACTCACATGTTAGTTAAATATGCATCATAAATAATATCATGCATTAAG
Found at i:383783 original size:26 final size:25
Alignment explanation
Indices: 383723--383801 Score: 77
Period size: 26 Copynumber: 2.9 Consensus size: 25
383713 AAATCGAAAT
* *
383723 ATTAAAAAAATAAAAGAAAATTCGA
1 ATTAAAAAAAGAAAAAAAAATTCGA
383748 AGTTTGTAAAAAAAGAAGAAAAAAATTCGA
1 A---T-TAAAAAAAGAA-AAAAAAATTCGA
*
383778 ATTAAAAGAAGAAAAAAAAGATTC
1 ATTAAAAAAAGAAAAAAAA-ATTC
383802 AAAAGAAAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
25 7 0.16
26 14 0.31
27 1 0.02
28 1 0.02
29 10 0.22
30 12 0.27
ACGTcount: A:0.65, C:0.04, G:0.13, T:0.19
Consensus pattern (25 bp):
ATTAAAAAAAGAAAAAAAAATTCGA
Found at i:383810 original size:26 final size:26
Alignment explanation
Indices: 383755--383813 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
383745 CGAAGTTTGT
* **
383755 AAAAAAAGAAGAAAAAAATTCGAATT
1 AAAAAAAGAAGAAAAAAATTCAAAAG
*
383781 AAAAGAAGAA-AAAAAAGATTCAAAAG
1 AAAAAAAGAAGAAAAAA-ATTCAAAAG
383807 AAAAAAA
1 AAAAAAA
383814 TTTCAAGTAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 6 0.22
26 21 0.78
ACGTcount: A:0.75, C:0.03, G:0.12, T:0.10
Consensus pattern (26 bp):
AAAAAAAGAAGAAAAAAATTCAAAAG
Found at i:384781 original size:32 final size:32
Alignment explanation
Indices: 384743--384836 Score: 117
Period size: 32 Copynumber: 3.1 Consensus size: 32
384733 AAAGAAAAAG
384743 AAATTGAAATTGAAAAAGAAATTTCAAAAATA
1 AAATTGAAATTGAAAAAGAAATTTCAAAAATA
*
384775 AAATTGAAATGGAAAAAGAAATTTCAAAAA-A
1 AAATTGAAATTGAAAAAGAAATTTCAAAAATA
* **
384806 AAA--G-AA-TGAGAGTGAAATTTCAAAAATA
1 AAATTGAAATTGAAAAAGAAATTTCAAAAATA
384834 AAA
1 AAA
384837 GAGAGTGTGA
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
27 16 0.29
28 6 0.11
29 1 0.02
31 4 0.07
32 29 0.52
ACGTcount: A:0.63, C:0.03, G:0.13, T:0.21
Consensus pattern (32 bp):
AAATTGAAATTGAAAAAGAAATTTCAAAAATA
Found at i:384796 original size:18 final size:17
Alignment explanation
Indices: 384732--384797 Score: 59
Period size: 18 Copynumber: 4.0 Consensus size: 17
384722 ATTGTGGAAG
384732 GAAA-GAAAAAGAAATT
1 GAAATGAAAAAGAAATT
384748 GAAATTGAAAAAGAAATT
1 GAAA-TGAAAAAGAAATT
** *
384766 TCAA--AAATA-AAATT
1 GAAATGAAAAAGAAATT
384780 GAAATGGAAAAAGAAATT
1 GAAAT-GAAAAAGAAATT
384798 TCAAAAAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
14 7 0.18
15 4 0.11
16 4 0.11
17 4 0.11
18 19 0.50
ACGTcount: A:0.64, C:0.02, G:0.15, T:0.20
Consensus pattern (17 bp):
GAAATGAAAAAGAAATT
Found at i:386455 original size:33 final size:34
Alignment explanation
Indices: 386407--386471 Score: 96
Period size: 33 Copynumber: 1.9 Consensus size: 34
386397 AAGATTGTGA
* *
386407 TTTAATTATGTCATGCATTA-TTAATCTGCATCT
1 TTTAAATATGACATGCATTATTTAATCTGCATCT
*
386440 TTTAAATATGACATGCATTATTTGATCTGCAT
1 TTTAAATATGACATGCATTATTTAATCTGCAT
386472 TCAATAAAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 18 0.64
34 10 0.36
ACGTcount: A:0.29, C:0.14, G:0.11, T:0.46
Consensus pattern (34 bp):
TTTAAATATGACATGCATTATTTAATCTGCATCT
Found at i:388071 original size:50 final size:52
Alignment explanation
Indices: 388012--388109 Score: 130
Period size: 52 Copynumber: 1.9 Consensus size: 52
388002 AAGTAATTTA
* *
388012 CATGTTAGTT-AACTATGCATCA-TAAATCCTA-TCATGCATTTTGTAACTCC
1 CATGTTAGTTAAACTATGCATCATTAAAT-CAAGTCATGCATTTAGTAACTCC
* *
388062 CATGTTAGTTAAAGTTTGCATCATTAAATCAAGTCATGCATTTAGTAA
1 CATGTTAGTTAAACTATGCATCATTAAATCAAGTCATGCATTTAGTAA
388110 TCCATTAGTT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
50 10 0.24
51 12 0.29
52 19 0.46
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (52 bp):
CATGTTAGTTAAACTATGCATCATTAAATCAAGTCATGCATTTAGTAACTCC
Found at i:389413 original size:213 final size:214
Alignment explanation
Indices: 388749--389371 Score: 653
Period size: 214 Copynumber: 2.9 Consensus size: 214
388739 ACGAGTTCTT
* * * ** * * * * *
388749 TTCAAGACAACCCATTCCTTTGACCAATTTTATGAACAGTCTATGCTC-GAGAAATCACATCA-T
1 TTCAAGACAATCCATTCATTTGAGCAATTTTCCGAACATTCCACGATCAG-GAAATCTCATCATT
* * * * *
388812 TGAGTCTAAATAGTTTTTCACTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTTTTTTACAT
65 TG-GTCTAAATAGTTTGTCAATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT
* *
388877 GAGAATTGTTTCTCTCTTGATCCTTGGCCTAACTTCTTAACTTGTCAAACTTTTACGTGTTCTTT
129 GAGAATTGTTTCTCTCTTGGTCCTTGGCCTAACTTCTTAACTTGTCAAACTTTTACGAGTTCTTT
* * *
388942 TATAACTTCGGCTCCTTAAAGTT
194 TACAACTTC-GCT-CTTCAAGTA
* * * * * * * ** * *
388965 TTCAATACAATCTATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGGTAATCTGATCATTT
1 TTCAAGACAATCCATTCATTTGAGCAATTTTCCGAACATTCCACGATCAGGAAATCTCATCATTT
* * * * * ** *
389030 GGTTTAAATTGTTTGTCATTTTGAAAAAAAAAATTTGGTCTATGAATTAAAAACTTATTTACGTG
66 GGTCTAAATAGTTTGTCAATTTG-TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * * *
389095 AAAATTGTTTCTCTCTTGGTCCTTAGTCTAA---CTTAACTTGTCAAACTTTTACAAGTTATTTT
130 AGAATTGTTTCTCTCTTGGTCCTTGGCCTAACTTCTTAACTTGTCAAACTTTTACGAGTTCTTTT
*
389157 ACAACTTCGGTTCTTCTAAGTA
195 ACAACTTC-GCTCTTC-AAGTA
* * *
389179 TTCAAGACGATCCATTCATTTGAGCAATTTTCCTAACTTTCCACGATCAGGAAATCTCATCATTT
1 TTCAAGACAATCCATTCATTTGAGCAATTTTCCGAACATTCCACGATCAGGAAATCTCATCATTT
* * * *
389244 GGTCTAAATAGTATGTCAAATTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTGTTTATGTGA
66 GGTCTAAATAGTTTGTCAATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
* * *
389309 GAATTGCTTCTCTCTTGGTCTTTGGCCAAACTTCTTAACTTGTCAAACTTTTACGAGTTCTTT
131 GAATTGTTTCTCTCTTGGTCCTTGGCCTAACTTCTTAACTTGTCAAACTTTTACGAGTTCTTT
389372 CGAGCAACTT
Statistics
Matches: 330, Mismatches: 70, Indels: 14
0.80 0.17 0.03
Matches are distributed among these distances:
213 62 0.19
214 111 0.34
216 93 0.28
217 64 0.19
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (214 bp):
TTCAAGACAATCCATTCATTTGAGCAATTTTCCGAACATTCCACGATCAGGAAATCTCATCATTT
GGTCTAAATAGTTTGTCAATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
GAATTGTTTCTCTCTTGGTCCTTGGCCTAACTTCTTAACTTGTCAAACTTTTACGAGTTCTTTTA
CAACTTCGCTCTTCAAGTA
Found at i:389421 original size:169 final size:169
Alignment explanation
Indices: 389229--389540 Score: 457
Period size: 169 Copynumber: 1.8 Consensus size: 169
389219 CCACGATCAG
*
389229 GAAATCTCATCATTTGGTCTAAATAGTATGTCAAATTGTAAACAACTTTTGGTCTTTGAATTAAA
1 GAAATCGCATCATTTGGTCTAAATAGTATGTCAAATTGTAAACAACTTTTGGTCTTTGAATTAAA
*** ** * **
389294 AACTTGTTTATGTGAGAATTGCTTCTCTCTTGG-T-CTTTGGCCAAACTTCTTAACTTGTCAAAC
66 AACACATTTACATAAGAATTGCTTCTCTCTTGGTTCCTTT--CCAAACTTCCAAACTTGTCAAAC
389357 TTTTACGAGTTCTTTCGAGCAACTTTCCTTTCCATGCTCGA
129 TTTTACGAGTTCTTTCGAGCAACTTTCCTTTCCATGCTCGA
* * *
389398 GAAATCGCATCATTTGGTCTAAATAGTTTTTCAATTTGTAAACAACTTTTGGTCTTTGAATTAAA
1 GAAATCGCATCATTTGGTCTAAATAGTATGTCAAATTGTAAACAACTTTTGGTCTTTGAATTAAA
* *
389463 AACACATTTACATAAGAATTGTTTCTCTCTTGGTTCCTTTCCAAACTTCCAAACTTTTCAAACTT
66 AACACATTTACATAAGAATTGCTTCTCTCTTGGTTCCTTTCCAAACTTCCAAACTTGTCAAACTT
*
389528 TTATGAGTTCTTT
131 TTACGAGTTCTTT
389541 TATAACTTTG
Statistics
Matches: 126, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
169 121 0.96
170 1 0.01
171 4 0.03
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (169 bp):
GAAATCGCATCATTTGGTCTAAATAGTATGTCAAATTGTAAACAACTTTTGGTCTTTGAATTAAA
AACACATTTACATAAGAATTGCTTCTCTCTTGGTTCCTTTCCAAACTTCCAAACTTGTCAAACTT
TTACGAGTTCTTTCGAGCAACTTTCCTTTCCATGCTCGA
Found at i:389527 original size:599 final size:596
Alignment explanation
Indices: 388791--389925 Score: 1553
Period size: 599 Copynumber: 1.9 Consensus size: 596
388781 TGAACAGTCT
* *
388791 ATGCTCGAGAAATCACATCATTGAGTCTAAATAGTTTTTCACTTTGTAAACAACTTTTGGTTTTT
1 ATGCTCGAGAAATCACATCATTGAGTCTAAATAGTTTTTCAATTTGTAAACAACTTTTGGTCTTT
*** * * **
388856 GAATTAAAAACTTTTTTACATGAGAATTGTTTCTCTCTTGATCCTTGGCCTAACTTCTTAACTTG
66 GAATTAAAAACACATTTACATAAGAATTGTTTCTCTCTTGATCCTTGGCCAAACTTCCAAACTTG
* * * * *
388921 TCAAACTTTTACGTGTTCTTTTATAACTTCGGCTCCTTAAAGTTTTCAATACAATCTATTCCTTC
131 TCAAACTTTTACGAGTTCTTTTATAACTTCGGCTCCTTAAAATATTCAAGACAATCCATTCCTTC
* *
388986 GAGCAATTTTTCGAACATTCCATGCTTGGGTAATCTG-ATCATTTGGTTTAAATTGTTTGTCATT
196 GAGCAATTTTTCGAACATTCCATGCTTGGG-AATC-GCATCATTTGGTCTAAATTGTTAGTCATT
389050 TTGAAAAAAAAAATTTGGTCTATGAATTAAAAACTTATTTACGTGAA-AATTGTTTCTCTCTTGG
259 TTG-AAAAAAAAATTTGGTCTATGAATTAAAAACTTATTTACGT-AAGAATTGTTTCTCTCTT-G
* * * * * *
389114 TCCTTAGTCTAACTT-AACTTGTCAAACTTTTACAAGTTATTTTACAACTTCGGTT-CTTCTAAG
321 TCCTTAGACGAACTTCAACTTATCAAACTGTTACAAGCTATTTTACAACTTCGGTTCCTT-AAAG
* * * *
389177 TATTCAAGACGATCCATTCATTTGAGCAATTTTCCTAACTTTCCACGATCAGGAAATCTCATCAT
385 TATTCAAGACAATCCATTCATTTGAGCAATTTTCCTAACATTCCACGATCAGGAAATCACATAAT
* * *
389242 TTGGTCTAAATAGTATGTCAAATTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTGTTTATGT
450 TTGGTCTAAATAGT-TGTCAAATTGTAAACAACTTTTCGTCTTTGAATTAAAAACTTATTTACGT
389307 GAGAATTGCTTCTCTCTTGGTCTTTGGCCAAACTTCTTAACTTGTCAAACTTTTACGAGTTCTTT
514 GAGAATTGCTTCTCTCTTGGTCTTTGGCCAAACTTCTTAACTTGTCAAACTTTTACGAGTTCTTT
389372 CGAGCAACTTTCCTTTCC
579 CGAGCAACTTTCCTTTCC
*
389390 ATGCTCGAGAAATCGCATCATTTG-GTCTAAATAGTTTTTCAATTTGTAAACAACTTTTGGTCTT
1 ATGCTCGAGAAATCACATCA-TTGAGTCTAAATAGTTTTTCAATTTGTAAACAACTTTTGGTCTT
* *
389454 TGAATTAAAAACACATTTACATAAGAATTGTTTCTCTCTTGGTTCCTT-TCCAAACTTCCAAACT
65 TGAATTAAAAACACATTTACATAAGAATTGTTTCTCTCTT-GATCCTTGGCCAAACTTCCAAACT
* * * * *
389518 TTTCAAACTTTTATGAGTTCTTTTATAACTTTGGTTCCTTAAAATATTCAAGACGATCCATTCCT
129 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGCTCCTTAAAATATTCAAGACAATCCATTCCT
* *
389583 TTGAGTAATTTTTCGAACATTCCATGCTTGGGAATCGCATCATTTGGTCTAAATTGTTAGTCATT
194 TCGAGCAATTTTTCGAACATTCCATGCTTGGGAATCGCATCATTTGGTCTAAATTGTTAGTCATT
* * ** * * * *
389648 TTGCAAACAACTTTTGGTTTTTGAATTAAAAACTTATTTATGTAAGAATTGTTTCTCTCTTGTTC
259 TTGAAAAAAAAATTTGGTCTATGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGTCC
* * * * *
389713 TTGGACGATCTTCCGAACTTATCAAACTGTTACTAGCTCTTTTATAACTTCGGTTCCTTAAAGTA
324 TTAGACGAACTT-C-AACTTATCAAACTGTTACAAGCTATTTTACAACTTCGGTTCCTTAAAGTA
* * * * * *
389778 TTCAAGACAATCCATTCCTTTGAGCAATTTTCCTAACATTGCATGCTCTGTAAATCACATAATTT
387 TTCAAGACAATCCATTCATTTGAGCAATTTTCCTAACATTCCACGATCAGGAAATCACATAATTT
* * * *
389843 GGTCTAAATAGTTGTCATATTGTAAACAACTTTTCTTCTTTGAATTATAAACTTATTTGCGTGAG
452 GGTCTAAATAGTTGTCAAATTGTAAACAACTTTTCGTCTTTGAATTAAAAACTTATTTACGTGAG
* *
389908 AATTGTTTTTCTCTTGGT
517 AATTGCTTCTCTCTTGGT
389926 TCTTGGATGA
Statistics
Matches: 464, Mismatches: 64, Indels: 17
0.85 0.12 0.03
Matches are distributed among these distances:
596 13 0.03
597 49 0.11
598 94 0.20
599 296 0.64
600 12 0.03
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.42
Consensus pattern (596 bp):
ATGCTCGAGAAATCACATCATTGAGTCTAAATAGTTTTTCAATTTGTAAACAACTTTTGGTCTTT
GAATTAAAAACACATTTACATAAGAATTGTTTCTCTCTTGATCCTTGGCCAAACTTCCAAACTTG
TCAAACTTTTACGAGTTCTTTTATAACTTCGGCTCCTTAAAATATTCAAGACAATCCATTCCTTC
GAGCAATTTTTCGAACATTCCATGCTTGGGAATCGCATCATTTGGTCTAAATTGTTAGTCATTTT
GAAAAAAAAATTTGGTCTATGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGTCCTT
AGACGAACTTCAACTTATCAAACTGTTACAAGCTATTTTACAACTTCGGTTCCTTAAAGTATTCA
AGACAATCCATTCATTTGAGCAATTTTCCTAACATTCCACGATCAGGAAATCACATAATTTGGTC
TAAATAGTTGTCAAATTGTAAACAACTTTTCGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
GCTTCTCTCTTGGTCTTTGGCCAAACTTCTTAACTTGTCAAACTTTTACGAGTTCTTTCGAGCAA
CTTTCCTTTCC
Found at i:389845 original size:215 final size:215
Alignment explanation
Indices: 389386--390605 Score: 1302
Period size: 214 Copynumber: 5.7 Consensus size: 215
389376 CAACTTTCCT
* *
389386 TTCCATGCTC-GAGAAATCGCATCATTTGGTCTAAATAGTTTTTCAATTTGTAAACAACTTTTGG
1 TTCCATGCTCTG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGG
** * **
389450 TCTTTGAATTAAAAACACATTTACATAAGAATTGTTTCTCTCTTGGTTCCTT-TCCAAACTTCCA
65 TCTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTT-CTTGGACAAACTTCCA
* * *
389514 AACTTTTCAAACTTTTATGAGTTCTTTTATAACTTTGGTTCCTTAAAATATTCAAGACGATCCAT
129 AACTTATCAAACTTTTAT-AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
* *
389579 TCCTTTGAGTAATTTTTCGAACA
193 TCCTTTGAGCAATTTTCCGAACA
* * * *
389602 TTCCATGCT-TGGGAATCGCATCATTTGGTCTAAATTGTTAGTCATTTTGCAAACAACTTTTGGT
1 TTCCATGCTCTGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGT
* * * * *
389666 TTTTGAATTAAAAACTTATTTATGTAAGAATTGTTTCTCTCTT-GTTCTTGGACGATCTTCCGAA
66 CTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAA
* * *
389730 CTTATCAAACTGTTACTAGCTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACAATCCATTC
131 CTTATCAAACTTTTA-TAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
*
389795 CTTTGAGCAATTTTCCTAACA
195 CTTTGAGCAATTTTCCGAACA
* * * * * **
389816 TTGCATGCTCTGTAAATCACATAATTTGGTCTAAATAG-TTGTCATATTGTAAACAACTTTTCTT
1 TTCCATGCTCTGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGT
* * * * ** * *
389880 CTTTGAATTATAAACTTATTTGCGTGAGAATTGTTTTTCTCTTGGTTCTTGGATGAACTTTCGAA
66 CTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAA
** * * * * * * * *
389945 CTTGCCAAACATTTAAGAGTTCTTTTGTAAATTCGGATCCTGAGAGTATTCAAAACGATCCATTC
131 CTTATCAAAC-TTTTATAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTC
* * *
390010 C-TT-ATCCAATTTT-CTAAAA
195 CTTTGA-GCAATTTTCCGAACA
* * * * *
390029 TTTCCATGGTC-GGGAATCACATCATTTGGTCTAAAAACTTTGTCATTTTGTAAACAACTTTTGG
1 -TTCCATGCTCTGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGG
* * * * *
390093 TCTTCGAATTAAAAACTTAATTACGTAAGAATTGTTCCTCTCTTGGTAT-TAGGACAAACTTACA
65 TCTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGT-TCTTGGACAAACTTCCA
* * *
390157 AAC-TAGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACTATCCA
129 AACTTA-TCAAACTTTTA-TAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* *
390221 TTCCTTTAAGTAATTTTCCGAACA
192 TTCCTTTGAGCAATTTTCCGAACA
* * * * **
390245 TTTCATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTATGTCATTTTGTAAACAACTTTTTCT
1 TTCCATGCTCTGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGT
* * * **
390310 CTTTGAATTAAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTCCTTGGCCTAAA-TTCTT
66 CTTTGAATT-AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAC-AAACTTCCA
* * * * *
390374 AACTTGTCAAACTTTTATGAGTTCTTTTACAACTTCGGTT-ATTCTAAGTATTCAAGATGATCCA
129 AACTTATCAAACTTTTAT-AGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCAAGACGATCCA
* * *
390438 TTCATTTGAGCAAATTTTTC-AACT
192 TTCCTTTGAGC-AATTTTCCGAACA
* * *
390462 TTCCATGCTCTGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAATAAATTTTTGT
1 TTCCATGCTCTGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGT
** * * * *
390527 CTTTGAATTAAAAACTTATGAATG-GAGAATTGTTTCTCTCTTGGTTCTTGG-CTGAACTTTCAA
66 CTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAC-AAACTTCCAA
**
390590 ACTTGGCAAACTTTTA
130 ACTTATCAAACTTTTA
390606 CGAGTGATAT
Statistics
Matches: 832, Mismatches: 148, Indels: 49
0.81 0.14 0.05
Matches are distributed among these distances:
213 36 0.04
214 296 0.36
215 235 0.28
216 86 0.10
217 168 0.20
218 11 0.01
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (215 bp):
TTCCATGCTCTGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGT
CTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAA
CTTATCAAACTTTTATAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC
TTTGAGCAATTTTCCGAACA
Found at i:390238 original size:429 final size:424
Alignment explanation
Indices: 389389--390544 Score: 1329
Period size: 429 Copynumber: 2.7 Consensus size: 424
389379 CTTTCCTTTC
* * *
389389 CATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCA-ATTTGTAAACAACTTTTGGTCT
1 CATGCTCGGGAAATCGCATCATTTGGTCTAAATAG-TTGTCATA-TTGTAAACAACTTTT-TTCT
** * ** *
389453 TTGAATTAAAAACACATTTACATAAGAATTGTTTCTCTCTTGGTTCCTTTCCA-AACTTCCAAAC
63 TTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTT-C-TTGGATAACTTTCAAAC
* * * *
389517 TTTTCAAACTTTTATGAGTTCTTTTATAACTTTGGTTCCTTAAAATATTCAAGACGATCCATTCC
126 TTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGATCC-T-AAGTATTCAAGACGATCCATTCC
* * * * *
389582 TTTGAGT-AATTTTTCGAACA-TTCCATGCTTGGGAATCGCATCATTTGGTCTAAATTGTTAGTC
189 -TTGA-TCAA-TTTTCTAAAATTTCCATGCTCGGGAATCGCATCATTTGGTCTAAATAGTTTGTC
* * * * *
389645 ATTTTGCAAACAACTTTTGGTTTTTGAATTAAAAACTTATTTATGTAAGAATTGTTTCTCTCTTG
251 ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAATTACGTAAGAATTGTTCCTCTCTTG
* * * * * * *
389710 TTCTTGGACGATCTTCCGAACTTATCAAACTGTTACTAGCTCTTTTATAACTTCGGTTCCTTAAA
316 GTATTGGACAAACTTACAAACTTATCAAACTGTTACGAGCTCTTTTATAACTTCGGTTCCTTAAA
* *
389775 GTATTCAAGACAATCCATTCCTTTGAGCAATTTTCCTAACATTG
381 GTATTCAAGACAATCCATTCCTTTAAGCAATTTTCCGAACATTG
* * * *
389819 CATGCTCTGTAAATCACATAATTTGGTCTAAATAGTTGTCATATTGTAAACAACTTTTCTTCTTT
1 CATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTGTCATATTGTAAACAACTTTT-TTCTTT
* * * * *
389884 GAATTATAAACTTATTTGCGTGAGAATTGTTTTTCTCTTGGTTCTTGGATGAACTTTCGAACTTG
65 GAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAT-AACTTTCAAACTTG
* * * * * *
389949 CCAAACATTTAAGAGTTCTTTTGTAAATTCGGATCCTGAGAGTATTCAAAACGATCCATTCCTT-
129 TCAAACTTTTATGAGTTCTTTTATAACTTCGGATCCT-A-AGTATTCAAGACGATCCATTCCTTG
* * * *
390013 ATCCAATTTTCTAAAATTTCCATGGTCGGGAATCACATCATTTGGTCTAAAAACTTTGTCATTTT
192 AT-CAATTTTCTAAAATTTCCATGCTCGGGAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
*
390078 GTAAACAACTTTTGGTCTTCGAATTAAAAACTTAATTACGTAAGAATTGTTCCTCTCTTGGTATT
256 GTAAACAACTTTTGGTCTTTGAATTAAAAACTTAATTACGTAAGAATTGTTCCTCTCTTGGTATT
* * *
390143 AGGACAAACTTACAAAC-TAGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTA
321 -GGACAAACTTACAAACTTA-TCAAACTGTTACGAGCTCTTTTATAACTTCGGTTCCTTAAAGTA
* * *
390207 TTCAAGACTATCCATTCCTTTAAGTAATTTTCCGAACATTT
384 TTCAAGACAATCCATTCCTTTAAGCAATTTTCCGAACATTG
* *
390248 CATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTATGTCATTTTGTAAACAACTTTTTCTCTT
1 CATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT-TGTCATATTGTAAACAACTTTTT-TCTT
* * * * *
390313 TGAATTAAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTCCTTGGCCTAA-ATTCTTAAC
64 TGAATT-AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGG-ATAACTTTC-AAAC
* * *
390377 TTGTCAAACTTTTATGAGTTCTTTTACAACTTCGGTTATTCTAAGTATTCAAGATGATCCATTCA
126 TTGTCAAACTTTTATGAGTTCTTTTATAACTTCGG--ATCCTAAGTATTCAAGACGATCCATTC-
* * * * *
390442 TTTGAGCAAATTTT-TCAACTTTCCATGCTCTGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
188 CTTGATC-AATTTTCTAAAATTTCCATGCTC-GGGAATCGCATCATTTGGTCTAAATAGTTTGTC
* * *
390506 ATTTTGTAAATAAATTTTTGTCTTTGAATTAAAAACTTA
251 ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
390545 TGAATGGAGA
Statistics
Matches: 609, Mismatches: 97, Indels: 37
0.82 0.13 0.05
Matches are distributed among these distances:
426 1 0.00
427 12 0.02
428 107 0.18
429 241 0.40
430 65 0.11
431 90 0.15
432 18 0.03
433 75 0.12
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.41
Consensus pattern (424 bp):
CATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTGTCATATTGTAAACAACTTTTTTCTTTG
AATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATAACTTTCAAACTTGTC
AAACTTTTATGAGTTCTTTTATAACTTCGGATCCTAAGTATTCAAGACGATCCATTCCTTGATCA
ATTTTCTAAAATTTCCATGCTCGGGAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
CAACTTTTGGTCTTTGAATTAAAAACTTAATTACGTAAGAATTGTTCCTCTCTTGGTATTGGACA
AACTTACAAACTTATCAAACTGTTACGAGCTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
CAATCCATTCCTTTAAGCAATTTTCCGAACATTG
Found at i:391588 original size:32 final size:32
Alignment explanation
Indices: 391552--391614 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
391542 GCCATCCATA
* * *
391552 CATGTACCTGAAATATATTAATCAGTTAATTG
1 CATGTACCTGAAACACATTAATCAGCTAATTG
391584 CATGTACCTGAAACACATTAATCAGCTAATT
1 CATGTACCTGAAACACATTAATCAGCTAATT
391615 AATTTCGGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.33
Consensus pattern (32 bp):
CATGTACCTGAAACACATTAATCAGCTAATTG
Found at i:391705 original size:39 final size:39
Alignment explanation
Indices: 391662--391758 Score: 176
Period size: 39 Copynumber: 2.5 Consensus size: 39
391652 AATTTGTCTG
*
391662 AAACTTAGACACATTAAAAACAACTATTAAATATGTATC
1 AAACTAAGACACATTAAAAACAACTATTAAATATGTATC
*
391701 AAACTAAGACATATTAAAAACAACTATTAAATATGTATC
1 AAACTAAGACACATTAAAAACAACTATTAAATATGTATC
391740 AAACTAAGACACATTAAAA
1 AAACTAAGACACATTAAAA
391759 CCCTATTTAA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 55 1.00
ACGTcount: A:0.55, C:0.14, G:0.05, T:0.26
Consensus pattern (39 bp):
AAACTAAGACACATTAAAAACAACTATTAAATATGTATC
Found at i:392208 original size:6 final size:6
Alignment explanation
Indices: 392197--392229 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
392187 CGTTGATGTG
392197 AACCCA AACCCA AACCCA AACCCA AACCCA AAC
1 AACCCA AACCCA AACCCA AACCCA AACCCA AAC
392230 TTGGTGATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (6 bp):
AACCCA
Found at i:394882 original size:13 final size:14
Alignment explanation
Indices: 394848--394900 Score: 54
Period size: 13 Copynumber: 3.7 Consensus size: 14
394838 TATCACTTTT
*
394848 TCTTCCTTTTCATC
1 TCTTTCTTTTCATC
*
394862 TTTTTCTTTTC-TC
1 TCTTTCTTTTCATC
*
394875 TCTTTCTTTTCACTT
1 TCTTTCTTTTCA-TC
394890 TCTTTGCTTTT
1 TCTTT-CTTTT
394901 TTTCTCTCAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
13 12 0.38
14 9 0.28
15 6 0.19
16 5 0.16
ACGTcount: A:0.04, C:0.26, G:0.02, T:0.68
Consensus pattern (14 bp):
TCTTTCTTTTCATC
Found at i:394937 original size:24 final size:26
Alignment explanation
Indices: 394909--394964 Score: 80
Period size: 24 Copynumber: 2.2 Consensus size: 26
394899 TTTTTCTCTC
394909 ATTTTCCCTTTTTCATC-TTTTTT-A
1 ATTTTCCCTTTTTCATCTTTTTTTCA
* *
394933 ATTTTTCTTTTTTCATCTTTTTTTCA
1 ATTTTCCCTTTTTCATCTTTTTTTCA
394959 ATTTTC
1 ATTTTC
394965 TTTTCTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 15 0.56
25 6 0.22
26 6 0.22
ACGTcount: A:0.12, C:0.18, G:0.00, T:0.70
Consensus pattern (26 bp):
ATTTTCCCTTTTTCATCTTTTTTTCA
Found at i:394956 original size:25 final size:24
Alignment explanation
Indices: 394917--394995 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 24
394907 TCATTTTCCC
394917 TTTTTCATCTTTTTT-AATTTTTCT
1 TTTTTCATCTTTTTTCAA-TTTTCT
394941 TTTTTCATCTTTTTTTCAATTTTCT
1 TTTTTCATC-TTTTTTCAATTTTCT
**
394966 TTTCTTTTTC-TTTTTCACACTTTTCT
1 TTT-TTCATCTTTTTTCA-A-TTTTCT
394992 TTTT
1 TTTT
394996 CCCTCGCTTG
Statistics
Matches: 48, Mismatches: 2, Indels: 9
0.81 0.03 0.15
Matches are distributed among these distances:
24 16 0.33
25 17 0.35
26 15 0.31
ACGTcount: A:0.10, C:0.16, G:0.00, T:0.73
Consensus pattern (24 bp):
TTTTTCATCTTTTTTCAATTTTCT
Found at i:394968 original size:24 final size:25
Alignment explanation
Indices: 394916--394996 Score: 80
Period size: 24 Copynumber: 3.3 Consensus size: 25
394906 CTCATTTTCC
*
394916 CTTTTTCATC-TTTTTT-AATTTTT
1 CTTTTTCATCTTTTTTTCAACTTTT
394939 CTTTTTTCATCTTTTTTTCAA-TTTT
1 C-TTTTTCATCTTTTTTTCAACTTTT
* *
394964 C-TTTTCTTTTTCTTTTTCACACTTTT
1 CTTTTTCATCTT-TTTTTCA-ACTTTT
394990 CTTTTTC
1 CTTTTTC
394997 CCTCGCTTGA
Statistics
Matches: 49, Mismatches: 2, Indels: 10
0.80 0.03 0.16
Matches are distributed among these distances:
23 9 0.18
24 16 0.33
25 12 0.24
26 7 0.14
27 5 0.10
ACGTcount: A:0.10, C:0.19, G:0.00, T:0.72
Consensus pattern (25 bp):
CTTTTTCATCTTTTTTTCAACTTTT
Found at i:394977 original size:26 final size:26
Alignment explanation
Indices: 394916--394994 Score: 72
Period size: 26 Copynumber: 3.0 Consensus size: 26
394906 CTCATTTTCC
394916 CTTTTTCATCTTTTTT-AATTTTTCTTTT
1 CTTTTTC-T-TTTTTTCAA-TTTTCTTTT
**
394944 -TTCATCTTTTTTTCAATTTTCTTTT
1 CTTTTTCTTTTTTTCAATTTTCTTTT
** *
394969 CTTTTTCTTTTTCACACTTTTCTTTT
1 CTTTTTCTTTTTTTCAATTTTCTTTT
394995 TCCCTCGCTT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
25 15 0.36
26 23 0.55
27 4 0.10
ACGTcount: A:0.10, C:0.18, G:0.00, T:0.72
Consensus pattern (26 bp):
CTTTTTCTTTTTTTCAATTTTCTTTT
Found at i:397084 original size:23 final size:24
Alignment explanation
Indices: 397039--397085 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
397029 GCCTTTTATT
* *
397039 TTTTTTTTTAATACTTTTGAAACTC
1 TTTTTTTTAAATAC-TTTCAAACTC
397064 TTTTTTTTAAATA-TTTCAAACT
1 TTTTTTTTAAATACTTTCAAACT
397086 TTGCACTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
25 12 0.60
ACGTcount: A:0.28, C:0.11, G:0.02, T:0.60
Consensus pattern (24 bp):
TTTTTTTTAAATACTTTCAAACTC
Found at i:398221 original size:32 final size:32
Alignment explanation
Indices: 398144--398222 Score: 131
Period size: 32 Copynumber: 2.5 Consensus size: 32
398134 TTTAAAATAT
* *
398144 ATTAATCAGCTAACTGCATGTACCTGAAATAC
1 ATTAATCAGCTAATTGCATGTACCTGAAACAC
*
398176 ATTAATCAGCTAATTGCATGTACTTGAAACAC
1 ATTAATCAGCTAATTGCATGTACCTGAAACAC
398208 ATTAATCAGCTAATT
1 ATTAATCAGCTAATT
398223 AATTTCGGCT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (32 bp):
ATTAATCAGCTAATTGCATGTACCTGAAACAC
Found at i:399106 original size:214 final size:212
Alignment explanation
Indices: 398689--404772 Score: 1250
Period size: 215 Copynumber: 28.7 Consensus size: 212
398679 GGTTGTATCA
* * * *
398689 ACTAGTTCTTTTATAACTTTGGTTCCTTAAAGTAATCAAGATGATCAATTCCTTCGAGTAATTTT
1 ACTAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCTATTTCTTCGAGCAATTTT
* ** * * * * *
398754 TCGAACATTTCATGCTCGAGAAATCGTATCATTTGGTCTAAATTGTTAGTAATTTTGTAAATAAC
66 TCGAATA-TTCATGCTCG-GAAATCACATCATTTGGTCTAAATAGTTTGCAA-TTTGTAAACAAA
* * * * * * *
398819 TTTTGGTTTTTGAATTAAAAACTTATTTACG-TAATAATTGTTTCTCTCTTGTTCTTGGACGAAC
128 TTTT-GTCTTTAAATTAAAAACTTATTTACGTTAATAATTGTTTCTCCCCTATTCTTGCACAAAC
**
398883 TTTCGAACTTGTCAAAATTTT
192 TTTCGAACTTCACAAAATTTT
* * *
398904 ACTAGTTCTTTTATAACTTTGGTTCATTGAAGTATTCAATATGATCTATTTCTTCGAGCAATTTT
1 ACTAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCTATTTCTTCGAGCAATTTT
* *
398969 TCGAATATTCCATGCTTTGGAAATCACATCATTTGGGCTAAATAGTTTGCAATTTGTAAACAAAT
66 TCGAATATT-CATGC-TCGGAAATCACATCATTTGGTCTAAATAGTTTGCAATTTGTAAACAAAT
*
399034 TTTGATCTTCT-AATTAAAAACTTATTTACGTTAA-AATTGTTTCTCCCCTATTGTTGCACAAAC
129 TTTG-TCTT-TAAATTAAAAACTTATTTACGTTAATAATTGTTTCTCCCCTATTCTTGCACAAAC
** *
399097 TTTCGAACTTCACTCACTTTT
192 TTTCGAACTTCACAAAATTTT
*** * *
399118 ACTAGTTCTTTTATAACTTCAATTCCTTAAAGTATTCAAGACGATCTA-CTCTTTCGAGCAATTT
1 ACTAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCTATTTC-TTCGAGCAATTT
* * *
399182 TCTAGACAT-TTCATGCACGGGAAATCACAT-ATTTTGGTCTAAATAGTTTGCCATTTTGTAAAC
65 T-TCGA-ATATTCATGCTC-GGAAATCACATCA-TTTGGTCTAAATAGTTTG-CAATTTGTAAAC
* * * * * * *
399245 AACTTTTTGTCTTTAAATTAATAACTTGTTTACG-TGAGAA---TTTCT--CCTGGTTCTTGGAC
125 AA-ATTTTGTCTTTAAATTAAAAACTTATTTACGTTAATAATTGTTTCTCCCCT-ATTCTTGCAC
* **
399304 GAACTTTCGAACTTGTCAAACA-TTT
188 AAACTTTCGAACTTCACAAA-ATTTT
* * *** * * ** * *
399329 ACGAGTTCTTTTCA-AGACGATCCATTCCTTTGACCAA-T-TTTATGAACATTCTA-TAC-TCAA
1 ACTAGTTCTTTT-ATA-AC-TTTGGTTCC-TT-A--AAGTATTCAAGATGA-TCTATTTCTTCGA
* * ** ** * * **
399389 G-AA---ATC-ACATCATTGA-G-T-TTAAAT-AGTTTTTCACTTT-G--TAAACAACTTCTGGT
58 GCAATTTTTCGA-AT-ATTCATGCTCGGAAATCA---CATCA-TTTGGTCTAAA-TAGTT-TGCA
* ** * * * * * * * * **
399442 TTTTG-AATTA-AAAACTT-T-TTTACA-TGAGAA-TTGTTT-C--T-CT-CTTGCTCCTTGGCC
115 ATTTGTAA--ACAAATTTTGTCTTTAAATTAAAAACTTATTTACGTTAATAATTGTTTC-TCCCC
* ** * *
399496 TA-ACTT-C-TTAACTTGTCAAACTT------T---T
177 TATTCTTGCACAAACTT-TCGAACTTCACAAAATTTT
* * * * * * * * *
399521 ACGAATTCTTTTATAACTTCGGTTCCTTAAAGTTTTCAATACGATATATTCCTTCGAGTAATTTT
1 ACTAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCTATTTCTTCGAGCAATTTT
* * * * *
399586 TCGAACATTTCATGCTCGGGTAATCTCATCATTTGGTCTAAATTGTTTGTCATTTTGTAAA-AAA
66 TCGAATA-TTCATGCTC-GGAAATCACATCATTTGGTCTAAATAGTTTG-CAATTTGTAAACAAA
* * * * * * *
399650 CTTTTGGACTTTGAATTAAAAACTTATTTACG-TGAGAATTGTTTCTCTCTTGGTTCTTGGC-CA
128 -TTTT-GTCTTTAAATTAAAAACTTATTTACGTTAATAATTGTTTCTCCCCT-ATTCTT-GCACA
** * ** *
399713 AAAATCCGAACTTGTCAAACTTTT
189 AACTTTCGAACTTCACAAAATTTT
* * * * * * * *
399737 ACGAGTT-TTTTCATTACTTCGGTTCCTTAAAGTATTAAACATGATCCATTTATTTGAGCAATTT
1 ACTAGTTCTTTT-ATAACTTTGGTTCCTTAAAGTATTCAAGATGATCTATTTCTTCGAGCAATTT
** * * * * *
399801 TGAGAACATTTCAT-CACCGGGGAATCACA-CATTTGGTCTAAATAGTATGTCATTTTGTAAAAA
65 TTCGAATA-TTCATGC-TC-GGAAATCACATCATTTGGTCTAAATAGTTTG-CAATTTGT----A
* * * * * * * *
399864 AAAAACATTTGGTCTGTGAATTAAAAACTTATTTACGTTAA-AATTGTTCCTCTCTTGCTTCTTG
122 AACAA-ATTTTGTCTTTAAATTAAAAACTTATTTACGTTAATAATTGTTTCTCCCCT-ATTCTTG
* *** *
399928 TC-CTAAC-TT--AACTTGTTAAACTTTT
185 -CACAAACTTTCGAACTTCACAAAATTTT
* * * * * * *
399953 ACAAGTTCTTTTACAACTTCGGTT-CTTCTAAGTATTCAAGACGATCCA-TTCATTTGAGCAATT
1 ACTAGTTCTTTTATAACTTTGGTTCCTT-AAAGTATTCAAGATGATCTATTTC-TTCGAGCAATT
* * * * * *
400016 TTCCTAACT-TTCCTTGCTCGGGAAATCACATCATTTGGTCTAAATAGTATGTCATTTTGTAAAT
64 TTTCGAA-TATT-CATGCTC-GGAAATCACATCATTTGGTCTAAATAGTTTG-CAATTTGTAAAC
* * * * * * * * *
400080 AACTTTTGGCCTTTGAATTAAAAATTTGTTTACG-TGAGAATTGTTTCTCTCTTGA-TCTTAGGC
125 AAATTTT-GTCTTTAAATTAAAAACTTATTTACGTTAATAATTGTTTCTCCCCT-ATTCTT--GC
* ** *
400143 -CAAAC-TTCTTAACTTGTCAAATTTTT
186 ACAAACTTTC-GAACTTCACAAAATTTT
* * * * * * *
400169 ACAAGTTCTTTTACAACTTCT-ATTCTTCTT--AGTATTCAAGACGATCCATTCCTTCTAGCAA-
1 ACTAGTTCTTTTATAACTT-TGGTTC--CTTAAAGTATTCAAGATGATCTATTTCTTCGAGCAAT
*** * * * * * *
400230 CAATC--CT-TTCCATGCTCGAGAAATCGCATCGTTTGGCCTAAATAGTTTTTCATTTTGTAAAC
63 TTTTCGAATATT-CATGCTCG-GAAATCACATCATTTGGTCTAAATAG-TTTGCAATTTGTAAAC
* * ** * * * * * *
400292 AACTTTTGGTCTTTGAATTAAAAACACATTTACG-TGAGAATCGTTTCTCTCTTGGTTCTTTGC-
125 AAATTTT-GTCTTTAAATTAAAAACTTATTTACGTTAATAATTGTTTCTCCCCT-ATTC-TTGCA
* ** *
400355 CAAAGTTTCGAACTTTTCAAACTTTT
187 CAAACTTTCGAACTTCACAAAATTTT
** ** * * *
400381 A-TGAGTTCTTTTATAACTTTTTTTAATTAAAATATTCAAGATGAT-TCA-TTCTTTTGAGCAAA
1 ACT-AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCT-ATTTC-TTCGAGCAAT
* * * * * * *
400443 TTTTCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCTAACTTGTTAGTCATTTTGTAAAC
63 TTTTCGAATATT-CATGCTCG-GAAATCACATCATTTGGTCTAAATAGTTTG-CAATTTGTAAAC
* * * * * * * * * *
400508 AACTTTTGATTTTTGAATTAAAAACTTATTTAAG-TAAGAATTGTTTCTCTCTTGTTCTTGGACG
125 AAATTTTG-TCTTTAAATTAAAAACTTATTTACGTTAATAATTGTTTCTCCCCTATTCTTGCACA
* *
400572 ATCTTTCGAACTT-ATCAAACTTTT
189 AACTTTCGAACTTCA-CAAAATTTT
* * * ** * *
400596 ACTAGCTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCGTTCCTTTGAGCAATTTT
1 ACTAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCTATTTCTTCGAGCAATTTT
* * * * * *
400661 CCGAACATTCCATGCTTTGGAAATCACATCATTTGGTCTAAATAGTTATTCATTTTGTAAACAAC
66 TCGAATATT-CATGC-TCGGAAATCACATCATTTGGTCTAAATAGTT-TGCAATTTGTAAACAAA
* * * * * * * * *
400726 TTTTCTTCTTTGAATTAAAAACTTATTTACG-TGAGAATTGTTTTTCTCTTGGTTCTTGGACAAA
128 TTTT-GTCTTTAAATTAAAAACTTATTTACGTTAATAATTGTTTCTCCCCT-ATTCTTGCACAAA
*
400790 CTTCCGAACTTGC-CAAAA-TTT
191 CTTTCGAACTT-CACAAAATTTT
** * * * * ** * ** ** *
400811 AAGAGTTCTTTTGTAAATTCGGAT-CTTGAGCGTATTCAAAACAATGC-A-TTCTTTAATCCAAT
1 ACTAGTTCTTTTATAACTTTGGTTCCTT-AAAGTATTCAAGATGAT-CTATTTCTTCGA-GCAAT
* * * * * * *
400873 TTTTCAAAATTTTCATGTTC-GAGAATCGCATCATTTTGTCTATAA-ACTTTGTCATTTTGTAAA
63 TTTTC-GAATATTCATGCTCGGA-AATCACATCATTTGGTCTA-AATAGTTTG-CAATTTGTAAA
* ** ** * * * * * * *
400936 TATCTTTTGGTCTTCGAATTAAAAACTTAATTACG-TAAGAATTGTTTCTCTCTTGGTTCTAGGA
124 CAAATTTT-GTCTTTAAATTAAAAACTTATTTACGTTAATAATTGTTTCTCCCCT-ATTCTTGCA
* * *** *
401000 CGAACTTAC-AATCTAGTCAAACTTTT
187 CAAACTTTCGAA-CTTCACAAAATTTT
* * * *
401026 A-TGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACT-TTCCATTTCTTCAAGTAATA
1 ACT-AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGA-TGATCTATTTCTTCGAGCAAT-
* ** * * * * *
401089 TTTT-GAACATTCCATGCTCGAGAAATTGCACCATTCGGTCTAAATAGTATGTCATTTTATAAAC
63 TTTTCGAATATT-CATGCTCG-GAAATCACATCATTTGGTCTAAATAGTTTG-CAATTTGTAAAC
* * * * * * *
401153 AACTTTTGCTCTTTGAATTAAAAACTTATTTACG-AAAGAATTGTTTCTCTCTTGATCCTTGGC-
125 AAATTTTG-TCTTTAAATTAAAAACTTATTTACGTTAATAATTGTTTCTCCCCT-ATTCTT-GCA
* * ** *
401216 CGAAC-TTCTTAACTTGTCAAACTTTT
187 CAAACTTTC-GAACTTCACAAAATTTT
* * * * ** * *
401242 A-TGAGTTCTTTTACAACTTCGATT-CTTCTAAGTATTCAAGACAATCCA-TTCATTTGAGCAAT
1 ACT-AGTTCTTTTATAACTTTGGTTCCTT-AAAGTATTCAAGATGATCTATTTC-TTCGAGCAAT
* *
401304 TTTTCGAACT-TTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
63 TTTTCGAA-TATT-CATGCTC-GGAAATCACATCATTTGGTCTAAATAGTTTG-CAATTTGTAAA
* * * ** * * * * *
401368 CAACTTTTGGTCTTTGAATTAAAAACTTA-TTAAG-GGAGAATCGTTTCTCTCTTGGTTCTTGGC
124 CAAATTTT-GTCTTTAAATTAAAAACTTATTTACGTTAATAATTGTTTCTCCCCT-ATTCTT-GC
** ** *
401431 -TGAACTTTCGAACTTGGCAAACTTTT
186 ACAAACTTTCGAACTTCACAAAATTTT
* ** * * *
401457 A-TGAGTTCTTTTATAACTTTGGTTCCTTAAAGTAATCAAGACAATCAATTCCTTCGAGTAATTT
1 ACT-AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCTATTTCTTCGAGCAATTT
* * ** * * * *
401521 TTTGAACATTCAATGCTCGGGAAATCGTATCATTTGGTCTACATTGTTAGTCATTTTGTAAACAA
65 TTCGAATATTC-ATGCTC-GGAAATCACATCATTTGGTCTAAATAGTTTG-CAATTTGTAAACAA
* * * * * * * *
401586 CTTTTGGTTTTTGAATTAAAAACTTATTTACG-TAATAATTGTTTCTCTCTTGTTCTTGGACGAA
127 ATTTT-GTCTTTAAATTAAAAACTTATTTACGTTAATAATTGTTTCTCCCCTATTCTTGCACAAA
* **
401650 CTTACGAACTTGTC-AAA----
191 CTTTCGAACTTCACAAAATTTT
* * * *
401667 A-T--TTCTTTTATAACTTTAGTTCATTAAAGTATTCAAGACGATC-ATTTGTTCGAGCAA-TTT
1 ACTAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCTATTTCTTCGAGCAATTTT
* * * * *
401727 TCTGAATATTCCATGCTCTGGAAATCGCATCATTTGGGCTGAATAGTTTGTCATTTTGTAAAAAA
66 TC-GAATATT-CATGCTC-GGAAATCACATCATTTGGTCTAAATAGTTTG-CAATTTGTAAACAA
* * *
401792 ATTTTGGTC-TTATAATTAAAAACTTATTTACGTT-AGAATTGTTTCTCTCCTATTGTTGCACAA
127 ATTTT-GTCTTTA-AATTAAAAACTTATTTACGTTAATAATTGTTTCTCCCCTATTCTTGCACAA
* * *
401855 ACTTCCGAACTTCACACACTTTT
190 ACTTTCGAACTTCACAAAATTTT
* * * * * * * *
401878 ACGAGTTCTCTTATAACTTCGATTACTTAAAGTATTCAAGACGATCTAGTCCTTCGAGCAATTTC
1 ACTAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCTATTTCTTCGAGCAATTT-
* * * * * * * *
401943 CTAGACAT-TTCATGCACGGGGAATCGCATAATTTGGTGTAAATAGTTTGCCCATTTTGTAAACA
65 TTCGA-ATATTCATGCTC-GGAAATCACATCATTTGGTCTAAATAGTTTG--CAATTTGTAAACA
* * * * * * * * *
402007 ACTTTTTGTCTTTAAATTAATAACTTATTTAC-ATGAGAA---TTTCT--CTTGGTTCTTGGACG
126 A-ATTTTGTCTTTAAATTAAAAACTTATTTACGTTAATAATTGTTTCTCCCCT-ATTCTTGCACA
**
402066 AACTTTCGAACTTGTCAAACA-TTT
189 AACTTTCGAACTTCACAAA-ATTTT
* * *** * * **
402090 ACGAGTTCTTTTCA-AGACGATCCATTCCTTTGACCAA-T-TTTATGAACATTCTA-TTC-TCG-
1 ACTAGTTCTTTT-ATA-AC-TTTGGTTCC-TT-A--AAGTATTCAAGATGA-TCTATTTCTTCGA
* * * * * ** * * * * ***
402149 GGAA---ATC-ACATCATTGA-G-TC-TAAAT-A-GTTTTTTAGTTTGTAAACAACTTTTGGTTT
58 GCAATTTTTCGA-AT-ATTCATGCTCGGAAATCACATCATTT-G-GTCTAAA-TA-GTTTGCAAT
** * * * * *
402205 TTG-AATTAAA-ATT-T-TTT---TT----AC--A--T--G---AGAATTGTTTCTCTCTTACTC
117 TTGTAAACAAATTTTGTCTTTAAATTAAAAACTTATTTACGTTAATAATTGTTTCTCCCCTA-TT
* ** *
402250 CTTGGC-CTAACTCCTT--AACTTGTCAAACTTTT
181 CTT-GCACAAACT--TTCGAACTTCACAAAATTTT
* * * * * * *
402282 ACGAATTCTTTTATAACTTCGGTTCCTTAAAGT-TTCCAATACGATCTATTCCTTCGAGAAATTT
1 ACTAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT-CAAGATGATCTATTTCTTCGAGCAATTT
* * * * * * **
402346 TCCGAACATTTCATGCTCGGGTAATCTCATCATTTGGTCTAAATTGTTTGTCATTTTGTAAATTA
65 TTCGAATA-TTCATGCTC-GGAAATCACATCATTTGGTCTAAATAGTTTG-CAATTTGTAAACAA
* * * ** * * * * **
402411 CTTTTGGACTTTGAATTAAAAACTTATTTACG-GGAGAATTGTTTCTCTCTTGGTTCTTGGTCGA
127 ATTTT-GTCTTTAAATTAAAAACTTATTTACGTTAATAATTGTTTCTCCCCT-ATTCTTGCAC-A
* * * *
402475 AA-ATTCAAACTTGTA-AAACTTTT
189 AACTTTCGAACTT-CACAAAATTTT
* * * * * * * *
402498 ACGAGTTCTTTCATTACTTCGGTTCCTTAAAGTATTCAACACGATCCA-TTATTCGAGCAATTTT
1 ACTAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCTATTTCTTCGAGCAATTTT
** * * ** * * * * *
402562 GAGAACATTCCATGATCGGGAAATTGCA-CATGTAGTCTAAATAGTATGCCATTTTGTAAAAAAA
66 TCGAATATT-CATGCTC-GGAAATCACATCATTTGGTCTAAATAGTTTG-CAATTTGTAAACAAA
* * * * * * * * * *
402626 TATTTGGTCTGTGAGTTAAAAACTTATTTACATGAA-AATTGTTTCTCTCTTGCTCCTTGTC-CT
128 T-TTT-GTCTTTAAATTAAAAACTTATTTACGTTAATAATTGTTTCTCCCCT-ATTCTTG-CACA
** *
402689 AAC-TT--AACTTGTCAAACTTTT
189 AACTTTCGAACTTCACAAAATTTT
* * * * * ** * *
402710 ACAAGTTCTTTTACAACTTCGATT-CTTCTAAGTATTCAAGACAATCCA-TTCATTTGAGCAATT
1 ACTAGTTCTTTTATAACTTTGGTTCCTT-AAAGTATTCAAGATGATCTATTTC-TTCGAGCAATT
* * * * * *
402773 TTCCTAA-AGTTCCATGCTGGGGAAATCGCATCATTTGGTCTAAATAGTATGTCATTTTGTAAAC
64 TTTCGAATA-TT-CATGCT-CGGAAATCACATCATTTGGTCTAAATAGTTTG-CAATTTGTAAAC
* * * * * * * * * *
402837 AACTTTTGGTCTTTGAATTAAAAACTTGTTTACG-TGAGAATTGTTTCTCTCTTGGTCCTAGGC-
125 AAATTTT-GTCTTTAAATTAAAAACTTATTTACGTTAATAATTGTTTCTCCCCT-ATTCT-TGCA
* ** *
402900 CAAAC-TTCTTAACTTGTCAAACTTTT
187 CAAACTTTC-GAACTTCACAAAATTTT
* ** * * ** * * * *
402926 ACAAGTTCTTTTACGACTTCT-ATTCTTTTTAGTATTCAAGACGATCCA-TTCATTCTAGCAA-C
1 ACTAGTTCTTTTATAACTT-TGGTTCCTTAAAGTATTCAAGATGATCTATTTC-TTCGAGCAATT
* * * * *
402988 TTTC--CT-TTCCATGCTCGAGAAATCACATCGTTTGGCCTAAATAGTTTTTTCATTTTGTAAAA
64 TTTCGAATATT-CATGCTCG-GAAATCACATCATTTGGTCTAAATAG--TTTGCAATTTGT-AAA
* * * * * * * ** ***
403050 CACA-TTT-ACGTGAGAA-T-----C--GTTT-C--T-CT-CTTGTTTCTTTGCC-AAAGTT-C-
124 CAAATTTTGTCTTTA-AATTAAAAACTTATTTACGTTAATAATTGTTTC-TCCCCTATTCTTGCA
* * * *
403097 CAAACTTTTCAAACTT------TTATG
187 CAAAC-TTTCGAACTTCACAAAATTTT
* ** * * * * * *
403118 AC---TTCTTTTATAAATTTGGTTAATTAAAATATTTAAGACGATCCATTCCTTTGAGCAATTTT
1 ACTAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCTATTTCTTCGAGCAATTTT
* * * * * * * *
403180 TCAAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAATTTGTTTGTCATTTTGTAAACAAC
66 TCGAATATT-CATGC-TCGGAAATCACATCATTTGGTCTAAATAGTTTG-CAATTTGTAAACAAA
* * * * * * * * * *
403245 TTTTGGTTTTTGAATTAAAAACTTATTTAC-ATAAGAATTGTTTCTCTCTTGTTCTTGGACGATC
128 TTTT-GTCTTTAAATTAAAAACTTATTTACGTTAATAATTGTTTCTCCCCTATTCTTGCACAAAC
* * *
403309 TTCCAAACTT-ATCAAACTTTT
192 TTTCGAACTTCA-CAAAATTTT
* * * * * * *
403330 ACTAGCTCTTTTATGACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTT
1 ACTAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCTATTTCTTCGAGCAATTTT
* * * *
403395 TCGAACATTCCATGCTCTGGAAATCACATCATTTGTTCTAAATAGTTTGTCATTTTGTAAACAAC
66 TCGAATATT-CATGCTC-GGAAATCACATCATTTGGTCTAAATAGTTTG-CAATTTGTAAACAAA
* * * * * * * * *
403460 TTTTCTTCTTTGAATTAAAAACTTATTTATG-TGAGAATTGTTTTTCTCTTAGTTCTTGGACAAA
128 TTTT-GTCTTTAAATTAAAAACTTATTTACGTTAATAATTGTTTCTCCCCTA-TTCTTGCACAAA
* *** *
403524 CTTCCGAACTTGTGAAACA-TTC
191 CTTTCGAACTTCACAAA-ATTTT
** * * ** * ** * * * *
403546 AAGAGTTC-TTTAGTAAATTCGAATCC-TAACAGTATTCAAAACAATCCATTCCTT-AATCAAAT
1 ACTAGTTCTTTTA-TAACTTTGGTTCCTTAA-AGTATTCAAGATGATCTATTTCTTCGAGC-AAT
* * * * * * * *
403608 TTTTTGAAATTTTCATGCTCGGGAATCGCATCATTTTGCCTAAA-AATTTGTCATTTTGTAAA-A
63 TTTTCG-AATATTCATGCTCGGAAATCACATCATTTGGTCTAAATAGTTTG-CAATTTGTAAACA
** * * * * * * *
403671 AACTTTTGGTCTTCGAATTAAAAACTTAATTACG-TAAGAATTGTTTCTCTCTTGGTTCTAGGAC
126 AA-TTTT-GTCTTTAAATTAAAAACTTATTTACGTTAATAATTGTTTCTCCCCT-ATTCTTGCAC
* * * *** * *
403735 GAACTTACAAACTAGTCAAACTTGT
188 AAACTTTCGAACTTCACAAAATTTT
* * * *
403760 ACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACT-TTCCATTTCTTCGAGTAATTT
1 ACTAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGA-TGATCTATTTCTTCGAGCAATTT
* * * * * *
403824 TTCGAACATTTAATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTATGTCATTTTGTAAACAA
65 TTCGAATA-TTCATGCTC-GGAAATCACATCATTTGGTCTAAATAGTTTG-CAATTTGTAAACAA
* * * * * * * **
403889 CTTTTGGTCTTTGAAA-TAAAAACTTATTTACG-TGAGAATTGTTTCTCTCTTGGTCCTTGGCTT
127 ATTTT-GTCTTT-AAATTAAAAACTTATTTACGTTAATAATTGTTTCTCCCCT-ATTCTT-GCAC
* ** * *
403952 AAA---T---AGTTGTCAAACTTAT
188 AAACTTTCGAACTTCACAAAATTTT
* * * * * * *
403971 A-TGACTTCTTTTACAACTTCGGTT-CTTCTATGTATTCAAGATGATCCA-TTCATTTGAGCAAT
1 ACT-AGTTCTTTTATAACTTTGGTTCCTT-AAAGTATTCAAGATGATCTATTTC-TTCGAGCAAT
* * ** * *
404033 TTTTTGAACT-TTCCATGCACGGGAAATTGCATCATTTGGTCTAAATAGTTTAGTTATTTTGTAA
63 TTTTCGAA-TATT-CATGCTC-GGAAATCACATCATTTGGTCTAAATAGTTT-G-CAATTTGTAA
* * * * ** * * * * *
404097 ACAACTTTTAG-----GAATTAAAAACTTA-TGAAG-GGAGAATTGTTTCTCTCTTGGTTCTTGG
123 ACAAATTTT-GTCTTTAAATTAAAAACTTATTTACGTTAATAATTGTTTCTCCCCT-ATTCTTGC
* * * * *
404155 TCGAACTTTCGAAGTTGACAAACTTTT
186 ACAAACTTTCGAACTTCACAAAATTTT
* * * ** * * **
404182 ACGAGTTTTTTTATAACTTTGGTTCCTTAAAGTAATCAAGACAATCAATTCCTTCGAATAATTTT
1 ACTAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCTATTTCTTCGAGCAATTTT
* ** ** * * * *
404247 CCGAGCATTCCATGCTCGGGAAATCGTATCATTTGGTCTAAATTGTTAGTCATTTTGTAAACAAC
66 TCGAATATT-CATGCTC-GGAAATCACATCATTTGGTCTAAATAGTTTG-CAATTTGTAAACAAA
* * * * * * **
404312 TTTTGGTTTTTGAATTAAAAACTTATTTACG-TAATAATTGTTTCTCTCTTGTTCTTGGATGAAC
128 TTTT-GTCTTTAAATTAAAAACTTATTTACGTTAATAATTGTTTCTCCCCTATTCTTGCACAAAC
*
404376 TTCCGAACTTGC-CAAAATTTT
192 TTTCGAACTT-CACAAAATTTT
** * * * * *
404397 ACTAGTTCTTTTATAACTTCAGTTCATTAAAGTATTCAAGACGATCCATCTCTTCAAGCAATTTT
1 ACTAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCTATTTCTTCGAGCAATTTT
* * ** *
404462 CCGAATATTCCATGCTTTGGAAATTGCATCATTTAGG-CTAAATAGTTTGTCATTTTGTAAACAA
66 TCGAATATT-CATGC-TCGGAAATCACATCATTT-GGTCTAAATAGTTTG-CAATTTGTAAACAA
* * *
404526 ATTTTAGTC-TTATAATTAAAAACTTATTTACGTT-AGAATT-TTTCTCTCCTATTGTTGCACAA
127 ATTTT-GTCTTTA-AATTAAAAACTTATTTACGTTAATAATTGTTTCTCCCCTATTCTTGCACAA
* * * * *
404588 ACTTCCAAATTTCACACACTTTT
190 ACTTTCGAACTTCACAAAATTTT
* *** * * * *
404611 ACAAGTTCTTTTATAACTTCAATTCATTAAAGTATTCAAGACGATCTAGTCCTTCGAGCAATTTT
1 ACTAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCTATTTCTTCGAGCAATTTT
* * * * * * *
404676 CTAGACAT-TTTATGCACGAGAAATCGCATAATTTGGTCTAAATAGTTTGCGATTT-TATAAAAA
66 -TCGA-ATATTCATGCTCG-GAAATCACATCATTTGGTCTAAATAGTTTGCAATTTGTA-AACAA
*
404739 ACCTTTTGTCTTTAAATTAATAACTTATTTACGT
127 A--TTTTGTCTTTAAATTAAAAACTTATTTACGT
404773 GAGAATTTCT
Statistics
Matches: 4550, Mismatches: 925, Indels: 789
0.73 0.15 0.13
Matches are distributed among these distances:
186 4 0.00
187 15 0.00
188 15 0.00
189 49 0.01
190 28 0.01
191 15 0.00
192 68 0.01
193 44 0.01
194 13 0.00
195 19 0.00
196 14 0.00
197 27 0.01
198 8 0.00
199 15 0.00
200 17 0.00
201 23 0.01
202 16 0.00
203 8 0.00
204 21 0.00
205 30 0.01
206 182 0.04
207 83 0.02
208 17 0.00
209 15 0.00
210 43 0.01
211 241 0.05
212 325 0.07
213 196 0.04
214 699 0.15
215 1191 0.26
216 966 0.21
217 77 0.02
218 4 0.00
219 54 0.01
220 7 0.00
221 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (212 bp):
ACTAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCTATTTCTTCGAGCAATTTT
TCGAATATTCATGCTCGGAAATCACATCATTTGGTCTAAATAGTTTGCAATTTGTAAACAAATTT
TGTCTTTAAATTAAAAACTTATTTACGTTAATAATTGTTTCTCCCCTATTCTTGCACAAACTTTC
GAACTTCACAAAATTTT
Found at i:399711 original size:216 final size:216
Alignment explanation
Indices: 399339--404833 Score: 3605
Period size: 216 Copynumber: 25.9 Consensus size: 216
399329 ACGAGTTCTT
* * * ** *
399339 TTCAAGACGATCCATTCCTTTGACCAATTTTAT-GAACA-TTCTATACTCAAGAAATCACATCA-
1 TTCAAGACGATCCATTCCTTCGAGCAATTTT-TCGAACATTTC-ATGCTCGGGAAATCTCATCAT
* * * * * * *
399401 TTGAGTTTAAATAGTTTTTCACTTTGTAAACAACTTCTGGTTTTTGAATTAAAAACTTTTTTACA
64 TTG-GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * * * *
399466 TGAGAATTGTTTCTCTCTTGCTCCTTGGCCTAACTTCTTAACTTGTCAAACTTTTACGAATTCTT
128 TGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCTGAACTTGTCAAACTTTTACGAGTTCTT
*
399531 TTATAACTTCGGTTCCTTAAAGTT
193 TTATAACTTCGGTTCCTTAAAGTA
* ** * *
399555 TTCAATACGATATATTCCTTCGAGTAATTTTTCGAACATTTCATGCTCGGGTAATCTCATCATTT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTTCATGCTCGGGAAATCTCATCATTT
* * *
399620 GGTCTAAATTGTTTGTCATTTTGTAAAAAACTTTTGGACTTTGAATTAAAAACTTATTTACGTGA
66 GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
** *
399685 GAATTGTTTCTCTCTTGGTTCTTGGCCAAAAATCCGAACTTGTCAAACTTTTACGAGTT-TTTTC
131 GAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTT-
*
399749 ATTACTTCGGTTCCTTAAAGTA
195 ATAACTTCGGTTCCTTAAAGTA
* * * ** * ** * * *
399771 TTAAACATGATCCATTTATTTGAGCAATTTTGAGAACATTTCAT-CACCGGGGAATCACA-CATT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTTCATGC-TCGGGAAATCTCATCATT
* * * *
399834 TGGTCTAAATAGTATGTCATTTTGTAAAAAAAAAACATTTGGTCTGTGAATTAAAAACTTATTTA
65 TGGTCTAAATAGTTTGTCATTTTGT----AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTA
* * * * * * * *
399899 CGTTAAAATTGTTCCTCTCTTGCTTCTTGTCCTAAC-T-T-AACTTGTTAAACTTTTACAAGTTC
126 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCTGAACTTGTCAAACTTTTACGAGTTC
* *
399961 TTTTACAACTTCGGTT-CTTCTAAGTA
191 TTTTATAACTTCGGTTCCTT-AAAGTA
* * * * * *
399987 TTCAAGACGATCCATTCATTTGAGCAATTTTCCTAAC-TTTCCTTGCTCGGGAAATCACATCATT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTT-CATGCTCGGGAAATCTCATCATT
* * * * *
400051 TGGTCTAAATAGTATGTCATTTTGTAAATAACTTTTGGCCTTTGAATTAAAAATTTGTTTACGTG
65 TGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * *
400116 AGAATTGTTTCTCTCTT-GATCTTAGGCCAAACTTCTTAACTTGTCAAATTTTTACAAGTTCTTT
130 AGAATTGTTTCTCTCTTGGTTCTT-GGCCAAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTT
* **
400180 TACAACTTCTATTCTTCTT--AGTA
194 TATAACTTCGGTTC--CTTAAAGTA
* * * * *
400203 TTCAAGACGATCCATTCCTTCTAGCAA-----C-AATCCTTTCCATGCTCGAGAAATCGCATCGT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAA-CATTT-CATGCTCGGGAAATCTCATCAT
* * **
400262 TTGGCCTAAATAGTTTTTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACACATTTACGT
64 TTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT
* * * * *
400327 GAGAATCGTTTCTCTCTTGGTTCTTTGCCAAAGTT-TCGAACTTTTCAAACTTTTATGAGTTCTT
129 GAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTT
*** ** *
400391 TTATAACTTTTTTTAATTAAAATA
193 TTATAACTTCGGTTCCTTAAAGTA
* * * * * * * * * *
400415 TTCAAGATGATTCATTCTTTTGAGCAAATTTTCAAACATTCCATGCTTGAGAAATCACATCATTT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTTCATGCTCGGGAAATCTCATCATTT
* * * * * * *
400480 GGTCTAACTTGTTAGTCATTTTGTAAACAACTTTTGATTTTTGAATTAAAAACTTATTTAAGTAA
66 GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
* * * * * *
400545 GAATTGTTTCTCTCTT-GTTCTTGGACGATCTT-TCGAACTTATCAAACTTTTACTAGCTCTTTT
131 GAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTT
400608 ATAACTTCGGTTCCTTAAAGTA
195 ATAACTTCGGTTCCTTAAAGTA
* * * * ** *
400630 TTCAAGACGATCCGTTCCTTTGAGCAATTTTCCGAACATTCCATGCTTTGGAAATCACATCATTT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTTCATGCTCGGGAAATCTCATCATTT
**
400695 GGTCTAAATAGTTAT-TCATTTTGTAAACAACTTTTCTTCTTTGAATTAAAAACTTATTTACGTG
66 GGTCTAAATAGTT-TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * * * *
400759 AGAATTGTTTTTCTCTTGGTTCTTGGACAAACTTCCGAACTTGCCAAA-ATTTAAGAGTTCTTTT
130 AGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTT
* * * **
400823 GTAAATTCGGAT-CTTGAGCGTA
195 ATAACTTCGGTTCCTT-AAAGTA
* * * ** * * * * *
400845 TTCAAAACAATGCATT-CTTTAATCCAATTTTTC-AAAATTTTCATGTTCGAG-AATCGCATCAT
1 TTCAAGACGATCCATTCCTTCGA-GCAATTTTTCGAACA-TTTCATGCTCGGGAAATCTCATCAT
* * * * * *
400907 TTTGTCTATAA-ACTTTGTCATTTTGTAAATATCTTTTGGTCTTCGAATTAAAAACTTAATTACG
64 TTGGTCTA-AATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * * * * *
400971 TAAGAATTGTTTCTCTCTTGGTTCTAGGACGAACTTAC--AATCTAGTCAAACTTTTATGAGTTC
128 TGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTT-CTGAA-CTTGTCAAACTTTTACGAGTTC
*
401034 TTTTATAACTTTGGTTCCTTAAAGTA
191 TTTTATAACTTCGGTTCCTTAAAGTA
** * * * * * *
401060 TTCAAGACTTTCCATTTCTTCAAGTAATATTTT-GAACATTCCATGCTCGAGAAAT-TGCACCAT
1 TTCAAGACGATCCATTCCTTCGAGCAAT-TTTTCGAACATTTCATGCTCGGGAAATCT-CATCAT
* * * * *
401123 TCGGTCTAAATAGTATGTCATTTTATAAACAACTTTTGCTCTTTGAATTAAAAACTTATTTACGA
64 TTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT
* * * * * *
401188 AAGAATTGTTTCTCTCTTGATCCTTGGCCGAACTTCTTAACTTGTCAAACTTTTATGAGTTCTTT
129 GAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTT
* * *
401253 TACAACTTCGATT-CTTCTAAGTA
194 TATAACTTCGGTTCCTT-AAAGTA
* * * *
401276 TTCAAGACAATCCATTCATTTGAGCAATTTTTCGAAC-TTTCCATGCTCGGGAAATCGCATCATT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTT-CATGCTCGGGAAATCTCATCATT
* *
401340 TGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA-TTAAGGG
65 TGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* ** * *
401404 AGAATCGTTTCTCTCTTGGTTCTTGGCTGAACTT-TCGAACTTGGCAAACTTTTATGAGTTCTTT
130 AGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTT
*
401468 TATAACTTTGGTTCCTTAAAGTA
194 TATAACTTCGGTTCCTTAAAGTA
* * * * *
401491 ATCAAGACAATCAATTCCTTCGAGTAATTTTTTGAACA-TTCAATGCTCGGGAAATCGT-ATCAT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTTC-ATGCTCGGGAAATC-TCATCAT
* * * *
401554 TTGGTCTACATTGTTAGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTTATTTACGT
64 TTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT
* * * * *
401619 AATAATTGTTTCTCTCTT-GTTCTTGGACGAACTTAC-GAACTTGTC-AA-----A--ATTTCTT
129 GAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTT-CTGAACTTGTCAAACTTTTACGAGTTCTT
** *
401674 TTATAACTTTAGTTCATTAAAGTA
193 TTATAACTTCGGTTCCTTAAAGTA
** * * * *
401698 TTCAAGACGAT-CATTTGTTCGAGCAA-TTTTCTGAATATTCCATGCTCTGGAAATCGCATCATT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTTCATGCTCGGGAAATCTCATCATT
* * * *
401761 TGGGCTGAATAGTTTGTCATTTTGTAAAAAAATTTTGGTCTTAT-AATTAAAAACTTATTTACGT
65 TGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTT-TGAATTAAAAACTTATTTACGT
* * * * * ** * *
401825 TAGAATTGTTTCTCTCCT-ATTGTT-GCACAAACTTCCGAACTTCACACACTTTTACGAGTTCTC
129 GAGAATTGTTTCTCTCTTGGTTCTTGGC-CAAACTTCTGAACTTGTCAAACTTTTACGAGTTCTT
* *
401888 TTATAACTTCGATTACTTAAAGTA
193 TTATAACTTCGGTTCCTTAAAGTA
* * * * * * * *
401912 TTCAAGACGATCTAGTCCTTCGAGCAA-TTTCCTAGACATTTCATGCACGGGGAATCGCATAATT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-ACATTTCATGCTCGGGAAATCTCATCATT
* * * * * *
401976 TGGTGTAAATAGTTTGCCCATTTTGTAAACAACTTTTTGTCTTTAAATTAATAACTTATTTACAT
65 TGGTCTAAATAGTTTG-TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT
* * *
402041 GAGAA----TT-TCTCTTGGTTCTTGGACGAACTT-TCGAACTTGTCAAACATTTACGAGTTCTT
129 GAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTT
* **
402100 TTCA-AGACGATCCATTCCTTTGACCAA-T-
193 TT-ATA-AC-TTCGGTTCC-TT-A--AAGTA
* * * * * ** * * * **
402128 TTTATGAAC-ATTCTATT-C-TCG-GGAA-ATCAC-ATCA-TTGA-G-TC--TAAA--T-AGTTT
1 TTCAAG-ACGA-TCCATTCCTTCGAGCAATTTTTCGAACATTTCATGCTCGGGAAATCTCA-TCA
* * * * ** **
402179 TTTAGTTTGTAAACAACTTTTGGT--TTTTG-AATTAA-AATT--T-TTT---TT----AC----
63 TTT-G-GTCTAAA-TA-GTTT-GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
** * * * * *
402226 --A--TGAGAATTGTTTCTCTCTTACTCCTTGGCCTAACTCCTTAACTTGTCAAACTTTTACGAA
123 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCTGAACTTGTCAAACTTTTACGAG
402287 TTCTTTTATAACTTCGGTTCCTTAAAGT-
188 TTCTTTTATAACTTCGGTTCCTTAAAGTA
* * * * *
402315 TTCCAATACGATCTATTCCTTCGAGAAATTTTCCGAACATTTCATGCTCGGGTAATCTCATCATT
1 TT-CAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTTCATGCTCGGGAAATCTCATCATT
* ** * *
402380 TGGTCTAAATTGTTTGTCATTTTGTAAATTACTTTTGGACTTTGAATTAAAAACTTATTTACGGG
65 TGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * *
402445 AGAATTGTTTCTCTCTTGGTTCTTGGTCGAAAATTC-AAACTTGTAAAACTTTTACGAGTTCTTT
130 AGAATTGTTTCTCTCTTGGTTCTTGG-CCAAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTT
* *
402509 CATTACTTCGGTTCCTTAAAGTA
194 TATAACTTCGGTTCCTTAAAGTA
* * ** * * *
402532 TTCAACACGATCCATT-ATTCGAGCAATTTTGAGAACATTCCATGATCGGGAAAT-TGCA-CATG
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTTCATGCTCGGGAAATCT-CATCATT
* * * * * * * *
402594 TAGTCTAAATAGTATGCCATTTTGTAAAAAAATATTTGGTCTGTGAGTTAAAAACTTATTTACAT
65 TGGTCTAAATAGTTTGTCATTTTGTAAACAACT-TTTGGTCTTTGAATTAAAAACTTATTTACGT
* * * * * *
402659 GAAAATTGTTTCTCTCTTGCTCCTTGTCCTAAC-T-T-AACTTGTCAAACTTTTACAAGTTCTTT
129 GAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTT
* * *
402721 TACAACTTCGATT-CTTCTAAGTA
194 TATAACTTCGGTTCCTT-AAAGTA
* * * * * * * *
402744 TTCAAGACAATCCATTCATTTGAGCAATTTTCCTAA-AGTTCCATGCTGGGGAAATCGCATCATT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACA-TTTCATGCTCGGGAAATCTCATCATT
* *
402808 TGGTCTAAATAGTATGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTGTTTACGTG
65 TGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * *
402873 AGAATTGTTTCTCTCTTGGTCCTAGGCCAAACTTCTTAACTTGTCAAACTTTTACAAGTTCTTTT
130 AGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTT
** ** * **
402938 ACGACTTCTATTCTTTTTAGTA
195 ATAACTTCGGTTCCTTAAAGTA
* * * * * *
402960 TTCAAGACGATCCATTCATTCTAGCAA-CTTTC---C-TTTCCATGCTCGAGAAATCACATCGTT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTT-CATGCTCGGGAAATCTCATCATT
* * * * ** ***** *
403020 TGGCCTAAATAGTTTTTTCATTTTGTAAA-ACACATTT--ACGTGAGAATCGTTTCTCTCTTGTT
65 TGGTCTAAATAG-TTTGTCATTTTGTAAACA-ACTTTTGGTC-TTTGAA---TTAAAAACTTATT
* ** * **** * * * * *
403082 T-CTTTGCCAA-AG--T-TC-CAAACTT-TT---CAAACTTTTATGACTTCTTTTATAAATTTGG
124 TAC-GTGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAAC--TTCTGA--ACTTGT-CAAACTT--
* * ** * *
403137 TTA--A-TTAAAATATTTA-AGACGATCCATTCCTTTGAGCAATTT
181 TTACGAGTT---CT-TTTATA-AC-TTCGGTTCC-TT-A--AAGTA
* * * * * * * * **
403179 TTCAA-AC-ATTCCA-TGCTT-G-GGAA---ATCGCATCA-TT--TGGTC--TAATTTGTTTGTC
1 TTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCG-AACATTTCATGCTCGGGAA-AT-CTCATC
* * * * *
403231 ATTT--TGTAAACAACTTTTGGT--TTTTGAATTAAA-AAC---T--TATTT-ACA-TAAGAA-T
62 ATTTGGTCTAAA-TA-GTTT-GTCATTTTG---TAAACAACTTTTGGTCTTTGA-ATTAAAAACT
* *** **** *
403283 TGTTT-C-T--CTCTTG-TTCT-TGGACGATCTT--CCAAAC-T-T--A----TCAAACTTTTAC
120 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCTGAACTTGTCAAACTTTTAC
* * *
403332 TAGCTCTTTTATGACTTCGGTTCCTTAAAGTA
185 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* * * *
403364 TTCAAGACGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCTGGAAATCACATCATTT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTTCATGCTCGGGAAATCTCATCATTT
* ** *
403429 GTTCTAAATAGTTTGTCATTTTGTAAACAACTTTTCTTCTTTGAATTAAAAACTTATTTATGTGA
66 GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
* * * * * * * *
403494 GAATTGTTTTTCTCTTAGTTCTTGGACAAACTTCCGAACTTGTGAAACATTCAAGAGTTC-TTTA
131 GAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTA
* **
403558 GTAAATTCGAATCC-TAACAGTA
196 -TAACTTCGGTTCCTTAA-AGTA
* * * * * *
403580 TTCAAAACAATCCATTCCTT-AATCAAATTTTTTGAA-ATTTTCATGCTCGGG-AATCGCATCAT
1 TTCAAGACGATCCATTCCTTCGAGC-AATTTTTCGAACA-TTTCATGCTCGGGAAATCTCATCAT
* * * * * *
403642 TTTGCCTAAA-AATTTGTCATTTTGTAAAAAACTTTTGGTCTTCGAATTAAAAACTTAATTACGT
64 TTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT
* * * * * * *
403706 AAGAATTGTTTCTCTCTTGGTTCTAGGACGAACTTAC-AAACTAGTCAAACTTGTACGAGTTCTT
129 GAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTT-CTGAACTTGTCAAACTTTTACGAGTTCTT
*
403770 TTATAACTTTGGTTCCTTAAAGTA
193 TTATAACTTCGGTTCCTTAAAGTA
** * * * * *
403794 TTCAAGACTTTCCATTTCTTCGAGTAATTTTTCGAACATTTAATGCTCGGGAAATCGCACCATTT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTTCATGCTCGGGAAATCTCATCATTT
* *
403859 GGTCTAAATAGTATGTCATTTTGTAAACAACTTTTGGTCTTTGAAATAAAAACTTATTTACGTGA
66 GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
* * * * * *
403924 GAATTGTTTCTCTCTTGGTCCTTGGCTTAAA----T--AGTTGTCAAACTTATATGACTTCTTTT
131 GAATTGTTTCTCTCTTGGTTCTTGGC-CAAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTT
* * *
403983 ACAACTTCGGTT-CTTCTATGTA
195 ATAACTTCGGTTCCTT-AAAGTA
* * * * *
404005 TTCAAGATGATCCATTCATTTGAGCAATTTTTTGAAC-TTTCCATGCACGGGAAAT-TGCATCAT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTT-CATGCTCGGGAAATCT-CATCAT
* * * *
404068 TTGGTCTAAATAGTTTAGTTATTTTGTAAACAACTTTTAG-----GAATTAAAAACTTA-TGAAG
64 TTGGTCTAAATAGTTT-GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * * * * *
404127 GGAGAATTGTTTCTCTCTTGGTTCTTGGTCGAACTT-TCGAAGTTGACAAACTTTTACGAGTTTT
128 TGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCT-GAACTTGTCAAACTTTTACGAGTTCT
*
404191 TTTATAACTTTGGTTCCTTAAAGTA
192 TTTATAACTTCGGTTCCTTAAAGTA
* * * ** * * *
404216 ATCAAGACAATCAATTCCTTCGAATAATTTTCCGAGCATTCCATGCTCGGGAAATCGT-ATCATT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTTCATGCTCGGGAAATC-TCATCATT
* * * *
404280 TGGTCTAAATTGTTAGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTTATTTACGTA
65 TGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* *** * * * *
404345 ATAATTGTTTCTCTCTT-GTTCTTGGATGAACTTCCGAACTTGCCAAAATTTTACTAGTTCTTTT
130 AGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTT
* *
404409 ATAACTTCAGTTCATTAAAGTA
195 ATAACTTCGGTTCCTTAAAGTA
* * * * **
404431 TTCAAGACGATCCA-TCTCTTCAAGCAATTTTCCGAATATTCCATGCTTTGGAAAT-TGCATCAT
1 TTCAAGACGATCCATTC-CTTCGAGCAATTTTTCGAACATTTCATGCTCGGGAAATCT-CATCAT
* *
404494 TTAGG-CTAAATAGTTTGTCATTTTGTAAACAAATTTTAGTCTTAT-AATTAAAAACTTATTTAC
64 TT-GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTT-TGAATTAAAAACTTATTTAC
* * * * * * *
404557 GTTAGAATT-TTTCTCTCCT-ATTGTT-GCACAAACTTC-CAAATT-TCACACACTTTTACAAGT
127 GTGAGAATTGTTTCTCTCTTGGTTCTTGGC-CAAACTTCTGAACTTGTCA-A-ACTTTTACGAGT
** *
404617 TCTTTTATAACTTCAATTCATTAAAGTA
189 TCTTTTATAACTTCGGTTCCTTAAAGTA
* * * * * * * *
404645 TTCAAGACGATCTAGTCCTTCGAGCAA-TTTTCTAGACATTTTATGCACGAGAAATCGCATAATT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-ACATTTCATGCTCGGGAAATCTCATCATT
* * * *
404709 TGGTCTAAATAGTTTG-CGATTTTATAAAAAACCTTTT-GTCTTTAAATTAATAACTTATTTACG
65 TGGTCTAAATAGTTTGTC-ATTTTGTAAACAA-CTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * *
404772 TGAGAA----TT-TCTCTTGGTTCTTGGACGAACTT-TCGAACTTGTCAAACATTTACGAGTTCT
128 TGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCT-GAACTTGTCAAACTTTTACGAGTTCT
404831 TTT
192 TTT
404834 CAAGACAATC
Statistics
Matches: 4137, Mismatches: 835, Indels: 619
0.74 0.15 0.11
Matches are distributed among these distances:
185 8 0.00
186 8 0.00
187 23 0.01
188 7 0.00
189 15 0.00
190 15 0.00
191 14 0.00
192 55 0.01
193 15 0.00
194 18 0.00
195 14 0.00
196 13 0.00
197 11 0.00
198 8 0.00
199 13 0.00
200 6 0.00
201 4 0.00
202 6 0.00
203 4 0.00
204 9 0.00
205 26 0.01
206 171 0.04
207 67 0.02
208 13 0.00
209 8 0.00
210 48 0.01
211 245 0.06
212 341 0.08
213 205 0.05
214 547 0.13
215 953 0.23
216 1092 0.26
217 72 0.02
218 11 0.00
219 72 0.02
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.41
Consensus pattern (216 bp):
TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTTCATGCTCGGGAAATCTCATCATTT
GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
GAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTA
TAACTTCGGTTCCTTAAAGTA
Found at i:404780 original size:214 final size:212
Alignment explanation
Indices: 403053--404833 Score: 1624
Period size: 215 Copynumber: 8.3 Consensus size: 212
403043 TGTAAAACAC
* * * * * *
403053 ATTTACGTGAGAATCGTTTCTCTCTTGTTTCTTTGCCAAAGTTCCAAACTTTTCAAACTTTTATG
1 ATTTACGTGAGAATTGTTTCTCTCTTG-TTCTTGGACGAACTTCCAAA--TTTCAAACTTTTACG
* * * * * * *
403118 ACTTCTTTTATAAATTTGGTTAATTAAAATATTTAAGACGATCCATTCCTTTGAGCAATTTTTCA
63 AGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-
* * * * *
403183 AACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAATTTGTTTGTCATTTTGTAAACAACTTT
127 GACATTTCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
*
403248 TGGTTTTTGAATTAAAAACTT
192 TGGTCTTTGAATTAAAAACTT
* * * *
403269 ATTTACATAAGAATTGTTTCTCTCTTGTTCTTGGACGATCTTCCAAACTTATCAAACTTTTACTA
1 ATTTACGTGAGAATTGTTTCTCTCTTGTTCTTGGACGAACTTCCAAA-TT-TCAAACTTTTACGA
* * * *
403334 GCTCTTTTATGACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTTCGA
64 GTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG-
* * * *
403399 ACATTCCATGCTCTGGAAATCACATCATTTGTTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
128 ACATTTCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
**
403464 CTTCTTTGAATTAAAAACTT
193 GGTCTTTGAATTAAAAACTT
* * * * * * * *
403484 ATTTATGTGAGAATTGTTTTTCTCTTAGTTCTTGGACAAACTTCCGAACTTGTGAAACATTCAAG
1 ATTTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCC-AAATT-TCAAACTTTTACG
* ** * * * * *
403549 AGTTC-TTTAGTAAATTCGAATC-CTAACAGTATTCAAAACAATCCATTCCTT-AATCAAATTTT
63 AGTTCTTTTA-TAACTTCGGTTCATTAA-AGTATTCAAGACGATCCATTCCTTCGAGC-AATTTT
* * * * * *
403611 TTGAAATTTTCATGCTCGGG-AATCGCATCATTTTGCCTAAA-AATTTGTCATTTTGTAAAAAAC
125 TCGACA-TTTCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
*
403674 TTTTGGTCTTCGAATTAAAAACTT
189 TTTTGGTCTTTGAATTAAAAACTT
* * * * * *
403698 AATTACGTAAGAATTGTTTCTCTCTTGGTTCTAGGACGAACTTACAAACTAGTCAAACTTGTACG
1 ATTTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCAAA-T-TTCAAACTTTTACG
* * ** * *
403763 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACTTTCCATTTCTTCGAGTAATTTTTCG
63 AGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
* * *
403828 AACATTTAATGCTCGGGAAATCGCACCATTTGGTCTAAATAGTATGTCATTTTGTAAACAACTTT
128 -ACATTTCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
*
403893 TGGTCTTTGAAATAAAAACTT
192 TGGTCTTTGAATTAAAAACTT
* * * *
403914 ATTTACGTGAGAATTGTTTCTCTCTTGGTCCTT-G--G--CTT-AAATAGTTGTCAAACTTATAT
1 ATTTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCAA-A-TT-TCAAACTTTTAC
* * * * * * *
403973 GACTTCTTTTACAACTTCGGTTC-TTCTATGTATTCAAGATGATCCATTCATTTGAGCAATTTTT
62 GAGTTCTTTTATAACTTCGGTTCATT-AAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT
* * * *
404037 TGA-ACTTTCCATGCACGGGAAATTGCATCATTTGGTCTAAATAGTTTAGTTATTTTGTAAACAA
126 CGACA-TTT-CATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT-GTCATTTTGTAAACAA
*
404101 CTTTTAG-----GAATTAAAAACTT
188 CTTTTGGTCTTTGAATTAAAAACTT
* * * * * * *
404121 A-TGAAGGGAGAATTGTTTCTCTCTTGGTTCTTGGTCGAACTTTCGAAGTTGACAAACTTTTACG
1 ATTTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAAC-TTCCAAATT-TCAAACTTTTACG
* * * * * * ** *
404185 AGTTTTTTTATAACTTTGGTTCCTTAAAGTAATCAAGACAATCAATTCCTTCGAATAATTTTCCG
63 AGTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
* * * *
404250 AGCATTCCATGCTCGGGAAATCGTATCATTTGGTCTAAATTGTTAGTCATTTTGTAAACAACTTT
128 A-CATTTCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
*
404315 TGGTTTTTGAATTAAAAACTT
192 TGGTCTTTGAATTAAAAACTT
* * * * * * *
404336 ATTTACGTAATAATTGTTTCTCTCTTGTTCTTGGATGAACTTCCGAACTTGCCAAAATTTTACTA
1 ATTTACGTGAGAATTGTTTCTCTCTTGTTCTTGGACGAACTTCC-AAATT-TCAAACTTTTACGA
* * *
404401 GTTCTTTTATAACTTCAGTTCATTAAAGTATTCAAGACGATCCA-TCTCTTCAAGCAATTTTCCG
64 GTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCATTC-CTTCGAGCAATTTTTCG
** * *
404465 A-ATATTCCATGCTTTGGAAATTGCATCATTTAGG-CTAAATAGTTTGTCATTTTGTAAACAAAT
128 ACAT-TT-CATGCTCGGGAAATCGCATCATTT-GGTCTAAATAGTTTGTCATTTTGTAAACAACT
*
404528 TTTAGTCTTAT-AATTAAAAACTT
190 TTTGGTCTT-TGAATTAAAAACTT
* * * * * * *
404551 ATTTACGTTAGAATT-TTTCTCTCCTATTGTTGCACAAACTTCCAAATTTCACACACTTTTACAA
1 ATTTACGTGAGAATTGTTTCTCTCTTGTTCTTGGACGAACTTCCAAATTTCA-A-ACTTTTACGA
** * * *
404615 GTTCTTTTATAACTTCAATTCATTAAAGTATTCAAGACGATCTAGTCCTTCGAGCAATTTTCTAG
64 GTTCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TCG
* * * * * *
404680 ACATTTTATGCACGAGAAATCGCATAATTTGGTCTAAATAGTTTG-CGATTTTATAAAAAACCTT
128 ACATTTCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC-ATTTTGTAAACAA-CTT
* *
404744 TT-GTCTTTAAATTAATAACTT
191 TTGGTCTTTGAATTAAAAACTT
* * * *
404765 ATTTACGTGAGAA---TTTCTCT-TGGTTCTTGGACGAACTTTCGAACTTGTCAAACATTTACGA
1 ATTTACGTGAGAATTGTTTCTCTCTTGTTCTTGGACGAAC-TTCCAAATT-TCAAACTTTTACGA
404826 GTTCTTTT
64 GTTCTTTT
404834 CAAGACAATC
Statistics
Matches: 1272, Mismatches: 238, Indels: 115
0.78 0.15 0.07
Matches are distributed among these distances:
206 27 0.02
207 14 0.01
209 2 0.00
210 29 0.02
211 218 0.17
212 44 0.03
213 20 0.02
214 301 0.24
215 418 0.33
216 197 0.15
217 2 0.00
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (212 bp):
ATTTACGTGAGAATTGTTTCTCTCTTGTTCTTGGACGAACTTCCAAATTTCAAACTTTTACGAGT
TCTTTTATAACTTCGGTTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGACA
TTTCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGT
CTTTGAATTAAAAACTT
Found at i:410572 original size:52 final size:52
Alignment explanation
Indices: 410494--410598 Score: 210
Period size: 52 Copynumber: 2.0 Consensus size: 52
410484 GTACAGGAAA
410494 TTTCTTAAAATTGAGAAAACAATCACTATTACAAACTAGCCTTTTGTTTTTT
1 TTTCTTAAAATTGAGAAAACAATCACTATTACAAACTAGCCTTTTGTTTTTT
410546 TTTCTTAAAATTGAGAAAACAATCACTATTACAAACTAGCCTTTTGTTTTTT
1 TTTCTTAAAATTGAGAAAACAATCACTATTACAAACTAGCCTTTTGTTTTTT
410598 T
1 T
410599 ATACTTTCGA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.34, C:0.15, G:0.08, T:0.43
Consensus pattern (52 bp):
TTTCTTAAAATTGAGAAAACAATCACTATTACAAACTAGCCTTTTGTTTTTT
Found at i:410632 original size:21 final size:22
Alignment explanation
Indices: 410592--410633 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
410582 TAGCCTTTTG
410592 TTTTTTTATACTTTCGAAACTC
1 TTTTTTTATACTTTCGAAACTC
410614 TTTTTTTAATA-TTTC-AAACT
1 TTTTTTT-ATACTTTCGAAACT
410634 TTGCACTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.26
22 11 0.58
23 3 0.16
ACGTcount: A:0.26, C:0.14, G:0.02, T:0.57
Consensus pattern (22 bp):
TTTTTTTATACTTTCGAAACTC
Found at i:411717 original size:32 final size:32
Alignment explanation
Indices: 411681--411743 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
411671 GCCATCCATA
* *
411681 CATGTACCTAAAATATATTAATCAACTAATTG
1 CATGTACCTAAAACACATTAATCAACTAATTG
* *
411713 CATGTACCTGAAACACATTAATCAGCTAATT
1 CATGTACCTAAAACACATTAATCAACTAATT
411744 AATTTCGGCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (32 bp):
CATGTACCTAAAACACATTAATCAACTAATTG
Found at i:411832 original size:39 final size:39
Alignment explanation
Indices: 411789--411887 Score: 180
Period size: 39 Copynumber: 2.5 Consensus size: 39
411779 TTAATTTGTC
*
411789 TCAAACTTAGACACATTAAAAACAACTATTAAATATGTA
1 TCAAACTAAGACACATTAAAAACAACTATTAAATATGTA
411828 TCAAACTAAGACACATTAAAAACAACTATTAAATATGTA
1 TCAAACTAAGACACATTAAAAACAACTATTAAATATGTA
*
411867 TAAAACTAAGACACATTAAAA
1 TCAAACTAAGACACATTAAAA
411888 CCCTATTTAA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 58 1.00
ACGTcount: A:0.55, C:0.15, G:0.05, T:0.25
Consensus pattern (39 bp):
TCAAACTAAGACACATTAAAAACAACTATTAAATATGTA
Found at i:412719 original size:211 final size:208
Alignment explanation
Indices: 412252--412854 Score: 615
Period size: 211 Copynumber: 2.8 Consensus size: 208
412242 CGTATCACCG
* * * * *
412252 AACTTTCAAACTTGGCAAACTTTTACGAGTTCTTTTATAACATTGGTTCCTTAAACTAATCAAGA
1 AACTTTCGAACTTGTC-AACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGA
* * * *
412317 CGATCCATTCCTTCGAGCAATTTT-TGAACATTCCAAGATGGGGAAATC-ATATCATTTGGTCTA
65 TGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCT-GGGAAATCGA-ATAATTTGGTCTA
* * * * * * *
412380 AATTGTTAGTCATTTTATAAGCAACTTTT-TTTTTTGAGTTAAAAACTTTTTTACGTAATAATTG
128 AATAGTTTGTCATTTTGTAAACAACTTTTGTTTTAT-AATTAAAAAC----TTACGTAAGAATTG
* * *
412444 TTTCTCTCTTGTTCTTGGACG
188 TTTCTCTCCTGTTATTGGACA
* * ** * * *
412465 AACTTCCGAACTTGTTAAAATTTACTAGTTTTTTTTATAACTTTGGTTCATTAAAGTATTCAAGA
1 AACTTTCGAACTTGTCAACTTTTACGAG-TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGA
* * * * *
412530 TGATCCATTTCTTTGAGCAATTTTCTGAACATTCCTTGCTCTGGAAATCGAATAATTTGGTTTAA
65 TGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCT-GGGAAATCGAATAATTTGGTCTAA
* *
412595 ATAGTTTGTCATTTTGTAAACAAATTTTGGTTTTATAATTAAAAACTTACGTTAGAATTGTTTCT
129 ATAGTTTGTCATTTTGTAAACAACTTTT-GTTTTATAATTAAAAACTTACGTAAGAATTGTTTCT
412660 CTCCTGTTATTGCG-CA
193 CTCCTGTTATTG-GACA
* * * *
412676 AACTTTCGAACTTCTCACACTTTTACGAGTTCTTTTATAACTTTGTTTCCTTCAAGTATTTAAGA
1 AACTTTCGAACTTGTCA-ACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGA
* * * * *
412741 TGATCCAATCCTTCAAGCAATTTTCT-AGACTTTTCATGCATGGGAAATCGTATAATTTGGTCTA
65 TGATCCATTCCTTCGAGCAATTTTCTGA-ACATTCCATGC-TGGGAAATCGAATAATTTGGTCTA
* *
412805 AATAGTTTGCCATTTTGTAAACAACTTTTTGTCTTTA-AATTAATAACTTA
128 AATAGTTTGTCATTTTGTAAACAAC-TTTTGT-TTTATAATTAAAAACTTA
412855 TTTACGTGAG
Statistics
Matches: 321, Mismatches: 58, Indels: 24
0.80 0.14 0.06
Matches are distributed among these distances:
210 1 0.00
211 160 0.50
212 27 0.08
213 64 0.20
214 54 0.17
215 10 0.03
216 5 0.02
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.43
Consensus pattern (208 bp):
AACTTTCGAACTTGTCAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGAT
GATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTGGGAAATCGAATAATTTGGTCTAAAT
AGTTTGTCATTTTGTAAACAACTTTTGTTTTATAATTAAAAACTTACGTAAGAATTGTTTCTCTC
CTGTTATTGGACA
Found at i:412893 original size:211 final size:210
Alignment explanation
Indices: 412251--415869 Score: 1941
Period size: 216 Copynumber: 17.2 Consensus size: 210
412241 CCGTATCACC
* * * * * *
412251 GAACTTTCAAACTTGGCAAACTTTTACGAGTTCTTTTATAACATTGGTTCCTTAAACTAATCAAG
1 GAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAG
* * * * *
412316 ACGATCCATTCCTTCGAGCAATTTT-TGAACATTCCAAG-ATGGGGAAATCATATCATTTGGTCT
66 ATGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCATCGGGAAATCGTATAATTTGGTCT
* * * * * * * * *
412379 AAATTGTTAGTCATTTTATAAGCAACTTTTTTTTTTGAGTTAAAAACTTTTTTACGTAATAATTG
131 AAATAGTTTGTCATTTTGTAAACAACTTTTTGTTTTAAATT-AAAACTTATTTACGTAAGAA-T-
412444 TTTCTCTCTTGTTCTTGGA
193 TTTCTCTC-TGTTCTTGGA
* * * * *
412463 CGAACTTCCGAACTTGTTAAA-ATTTACTAGTTTTTTTTATAACTTTGGTTCATTAAAGTATTCA
1 -GAACTTTCGAACTTGTCAAACATTTACGAG-TTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
* * * * *
412527 AGATGATCCATTTCTTTGAGCAATTTTCTGAACATTCCTTGC-TCTGGAAATCGAATAATTTGGT
64 AGATGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCATCGGGAAATCGTATAATTTGGT
* * * * *
412591 TTAAATAGTTTGTCATTTTGTAAACAAATTTTGGTTTTATAATTAAAA---ACTTACGTTAGAAT
129 CTAAATAGTTTGTCATTTTGTAAACAACTTTTTGTTTTA-AATTAAAACTTATTTACGTAAGAA-
*
412653 TGTTTCTCTCCTGTTATTGCGCA
192 T-TTTCTCT-CTGTTCTTG-G-A
* * * * * *
412676 -AACTTTCGAACTTCTCACACTTTTACGAGTTCTTTTATAACTTTGTTTCCTTCAAGTATTTAAG
1 GAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAG
* * * *
412740 ATGATCCAATCCTTCAAGCAATTTTCT-AGACTTTTCATGCAT-GGGAAATCGTATAATTTGGTC
66 ATGATCCATTCCTTCGAGCAATTTTCTGA-ACATTCCATGCATCGGGAAATCGTATAATTTGGTC
* *
412803 TAAATAGTTTGCCATTTTGTAAACAACTTTTTGTCTTTAAATTAATAACTTATTTACGTGAGAA-
130 TAAATAGTTTGTCATTTTGTAAACAACTTTTTGT-TTTAAATTAA-AACTTATTTACGTAAGAAT
412867 TTTCTCT-TGGTTCTTGGA
193 TTTCTCTCT-GTTCTTGGA
* * ***
412885 TGAACTTTCGAACTTGTCAAACATTTATGAGTTCTTTTCA-AGACGATCCATTCCTTTGACCAA-
1 -GAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTT-ATA-AC-TTTGGTTCC-TT-A--AAG
* * ** * * * ** * *
412948 T-TTTATGAACATTC-TATGC-TCGAG-AA--ATC--AA-A-T-CATTAAGTC--TAAATAGTTT
58 TATTCAAGATGATCCAT-TCCTTCGAGCAATTTTCTGAACATTCCATGCA-TCGGGAAATCG--T
* * ** * ** * *
413000 TTCACTTT-GTAAACAACA-TTTGGTC--TTTGAATTAAA-AAC---TT-TTTTATGTGAGAA-T
119 AT-AATTTGGTCTA-AATAGTTT-GTCATTTTG---TAAACAACTTTTTGTTTTAAATTAAAACT
* * * * * * *
413055 TGTTTCCCT-----CTTGCTCAT-TG-ACCT---
178 TATTTACGTAAGAATTTTCTC-TCTGTTCTTGGA
* * * * *
413079 -AAC-TTCTTAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTTTTTCA
1 GAACTTTC-GAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAG-TATTCA
* * * * *
413142 ATACGATCTATTCCTTCGAGCAATTTTCTGAACATTCCATGC-TCGGGTAATC-TCATCATTTGG
64 AGATGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCATCGGGAAATCGT-ATAATTTGG
* ** * * * * * *
413205 TCTAAATAATTTACCA---TGTAAATAACATTTGGACTTTGAATTAAAAACTTATTTACGTGAGA
128 TCTAAATAGTTTGTCATTTTGTAAACAACTTTTTG-TTTTAAATT-AAAACTTATTTACGTAAGA
*
413267 ATTCTTTCTCTCTTGGTTCTAGGCCA
191 A-T-TTTCTCTC-T-GTTCTTGG--A
* * * * * *
413293 -AAATCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATTACTTTGATTCCTTAAAGTATTCAAT
1 GAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAG
* ** * * * * * *
413356 AGGATCCATTTATTCGAGCAATTTTCAGAACATTCCTTG-ATCGAGAAATTGCATCATTTGGTCT
66 ATGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCATCGGGAAATCGTATAATTTGGTCT
* * * * * * * * *
413420 AAATAGTATGCCAATTTGTAAGCAAATTTTGGTCTGTGAATTAAAAACTTATTTACGTGAGAATT
131 AAATAGTTTGTCATTTTGTAAACAACTTTTTGT-TTTAAATT-AAAACTTATTTACGTAAGAA-T
* *
413485 GTTTCTCTCTTAGTCCTTGGCC
193 -TTTCTCTC-T-GTTCTTGG-A
* * * * * *
413507 TAAC-TT--AACTTGTCAAACTTTTACAAGTTCTTTTACAACTTCGGTT-CTTCTAAGTATTCAA
1 GAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTT-AAAGTATTCAA
* * * ** * *
413568 GACGATCCATTCATAT-GAGCAATTTT-TCGAACTTTCCATGC-TCTAGAAATCGTATCATTTAG
65 GATGATCCATTCCT-TCGAGCAATTTTCT-GAACATTCCATGCATCGGGAAATCGTATAATTTGG
* * * * * * *
413630 TCTAAATAGTTTTTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTCATTTATGTGAGA
128 TCTAAATAGTTTGTCATTTTGTAAACAACTTTTTGT-TTTAAATT-AAAACTTATTTACGTAAGA
* * * *
413695 ATCGCTCCTCTATTGGTTCTTCGCCA
191 AT--TTTCTCT-CT-GTTCTT-G-GA
* ** *
413721 -AACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCAATAAAATATTCAAG
1 GAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAG
* ** *
413785 ATGATCCATTCCTTCGAGCAATTTT-TCGAACATTCCATGC-TTGGGAAATCACATCATTTGGTC
66 ATGATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCATCGGGAAATCGTATAATTTGGTC
* * * *
413848 -AAATTGTTAGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTTATTTACGTAAGAAT
130 TAAATAGTTTGTCATTTTGTAAACAACTTTTTG-TTTTAAATT-AAAACTTATTTACGTAAGAA-
*
413912 TGTTTCTCTTTTGTTCTTGGA
192 T-TTTCTC-TCTGTTCTTGGA
* * * * * * * **
413933 CGAACATCCAAACTTATCAAACTTTTACTAGCTT-TTTTATTACTTTGGTTCCTTAAAGTATTTG
1 -GAACTTTCGAACTTGTCAAACATTTACGAG-TTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
* * * * * ** *
413997 AGACGATCCATTCCTTTGAGCAATTTT-TCGAACATTCCATTC-TCTGAAAATCACATCATTTGG
64 AGATGATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCATCGGGAAATCGTATAATTTGG
* * * * *
414060 TCTAAATAGTTTATCATTTTGTAAACAACATTTGATCTTTTGAATTCAAAACTTATTTACGTGAG
128 TCTAAATAGTTTGTCATTTTGTAAACAAC-TTT-TTGTTTTAAATT-AAAACTTATTTACGTAAG
* *
414125 AATTGTTTTTCACTTGGTTCTTGGA
190 AA-T-TTTCTCTC-T-GTTCTTGGA
* * * * * * * * *
414150 TGAACTTCCGAACTTGCCAAACAATTAAGAGTTCTTTTGTAACTTCGGATCCTGAGAGTACTT-A
1 -GAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTA-TTCA
* * * * * * * ** *
414214 AGACGATCCATTCCTT-AATCCAATTTT-TCGAACTTTCCATGC-CCGAG-ATTCACATCATTTG
64 AGATGATCCATTCCTTCGA-GCAATTTTCT-GAACATTCCATGCATCGGGAAATCGTATAATTTG
* * * * ** *
414275 GTCTAAAAACTTTGTCATTTCGTAAACAACTTTTCGTCTTCGAATTAAAAACTTAATTACGTAAG
127 GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTTGT-TTTAAATT-AAAACTTATTTACGTAAG
*
414340 AATTGTTTCTCTCTTGGTTCTAGGA
190 AA-T-TTTCTCTC-T-GTTCTTGGA
* * * *
414365 TGAACTTACAAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAA
1 -GAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAA
* * * * * *
414430 GACT-ATCCATTCGTTCGAGCAATTTTTTGAACATTCCATAC-TCTGGAAATCGCATCATTTGGT
65 GA-TGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCATCGGGAAATCGTATAATTTGGT
* * * * * *
414493 CTAAATAGTATGCCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTAATTTACGTGAGAA
129 CTAAATAGTTTGTCATTTTGTAAACAACTTTTTGT-TTTAAATT-AAAACTTATTTACGTAAGAA
* *
414558 TTGTTTCTCTCTTGGTCCTTGGCC
192 -T-TTTCTCTC-T-GTTCTTGG-A
* * * * * * * * ** *
414582 TAAC-TTCTTAACTTGTCGAACTTTTATGAGTTATTCTACAACTTCAGTT-CTTCTAAGTATTCA
1 GAACTTTC-GAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTT-AAAGTATTCA
* * * * * * * *
414645 AGACGATCCATTCATTTGAACAATTTTCTGAACTTTCCATGC-TCGAGAAATCGCATCATTTGGT
64 AGATGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCATCGGGAAATCGTATAATTTGGT
* * * * * *
414709 CTAAATAGTTTATCATTTTGTAAACATCTTTTGGTCTTTGAATTTAAAAACTTA-TTAAGTGAGA
129 CTAAATAGTTTGTCATTTTGTAAACAACTTTTTGT-TTT-AAATT-AAAACTTATTTACGTAAGA
*
414773 ATTGTTTCTCTCTTAGTTCTTGGCT
191 A-T-TTTCTCTC-T-GTTCTTGG-A
* *
414798 GAACTTTCGAACTTGGCAAAC-TTCTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTAATCAA
1 GAACTTTCGAACTTGTCAAACATT-TACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAA
* * * *
414862 GATGATCCATTCCTTTGAGCAATTTTCTGAACATTCCATAC-TTGGGAAATCGTATCATTTGGTC
65 GATGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCATCGGGAAATCGTATAATTTGGTC
* * * *
414926 TAAATTA-TTAGTCATTTTGTAAACAACTTTTGGTTTTAGAATTAAAAACTTATTTACGCAATAA
130 TAAA-TAGTTTGTCATTTTGTAAACAACTTTTTGTTTTA-AATT-AAAACTTATTTACGTAAGAA
*
414990 TTGTTTCTCTCTTGTTCTAGGA
192 -T-TTTCTCTC-TGTTCTTGGA
* * * *
415012 TGAACTTCCGAACTTGTCAAA-ATTTTACTAGTTCTTTCATAACTTTGGTTCATTAAAGTATTCA
1 -GAACTTTCGAACTTGTCAAACA-TTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
* * * * ** ** ** *
415076 AGACGATCCATTTCTTCAAGCAATTTTC-CATACATTAAATGC-TCTAGAAATCACATCATTT--
64 AGATGATCCATTCCTTCGAGCAATTTTCTGA-ACATTCCATGCATCGGGAAATCGTATAATTTGG
* **** * * * ** ** *
415137 TGTAAA-A---AAAAAATTTG---GC--C-TTAT-AATT-AA--AAACTT-ATTTACGTTAGAAT
128 TCTAAATAGTTTGTCATTTTGTAAACAACTTTTTGTTTTAAATTAAAACTTATTTACGTAAGAA-
* *
415187 TTTTTCTCTCTTGTTGTTGCA
192 -TTTTCTCTC-TGTTCTTGGA
* * * * * * *
415208 CGAACTTTCGAACTTCTCACACTTTTAAGAGTTCTTTTATAACTTCGATTCTTTAAAGTATTCAA
1 -GAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAA
* * * * * *
415273 GATGATCCAGTCTTTCGAGCAATTTTC-AAACATTCCAAGC-TAGGGAAATCGTATCATTTGGTC
65 GATGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCATCGGGAAATCGTATAATTTGGTC
* * * *
415336 TAAATTGTTAGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTTATTTA--T--G---
130 TAAATAGTTTGTCATTTTGTAAACAACTTTTTG-TTTTAAATT-AAAACTTATTTACGTAAGAAT
415394 --TCTCT-TGTTCTTGGA
193 TTTCTCTCTGTTCTTGGA
* *
415409 CGAAC-TTCTGAACTTGTCAAA-ATTTACTAGTT-TTTT-TAACTTTGGTTCATTAAAGTATTCA
1 -GAACTTTC-GAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
* * * * * *
415470 AGATGATCCGTTTCTTCGAGCAATTTTCTGAACATTCCATGC-TCTGGAAATTGCATCATTTGGT
64 AGATGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCATCGGGAAATCGTATAATTTGGT
* * * * * * *
415534 CTAAATAGTTTGTCATTTTGTAAACAAATTTTGGTCTTATACTTAAAAACTTACTTAAGTTAGAA
129 CTAAATAGTTTGTCATTTTGTAAACAACTTTTTGTTTTA-AATT-AAAACTTATTTACGTAAGAA
* *
415599 TTGCTTCTCTCCTGTTGTTGCA
192 TT--TTCTCT-CTGTTCTTGGA
* * * * * *
415621 CAAAC-TTCAGAACTTCTCACACTTTTTCGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCA
1 -GAACTTTC-GAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
** * * * * *
415685 AGACAATTCAGTCCTTCGAGCAATTTTCT-AGACTTTTCATGCA-CGGGAAATCGCATAATTTGG
64 AGATGATCCATTCCTTCGAGCAATTTTCTGA-ACATTCCATGCATCGGGAAATCGTATAATTTGG
* *
415748 TCTAAATAGTTT-TCCATTTTATAAACAACTTTTTGTCTTTAAATTAATAACTTATTTACGTGAG
128 TCTAAATAGTTTGT-CATTTTGTAAACAACTTTTTGT-TTTAAATTAA-AACTTATTTACGTAAG
415812 AA-TTTCTCT-TAGTTCTTGGA
190 AATTTTCTCTCT-GTTCTTGGA
*
415832 CGAACTTTCGAACTTGTCAAACATTTACGAGTTATTTT
1 -GAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTT
415870 CAACACGACC
Statistics
Matches: 2677, Mismatches: 543, Indels: 374
0.74 0.15 0.10
Matches are distributed among these distances:
186 2 0.00
188 2 0.00
189 10 0.00
190 12 0.00
191 12 0.00
192 32 0.01
193 2 0.00
194 2 0.00
195 33 0.01
196 112 0.04
197 18 0.01
198 64 0.02
199 88 0.03
200 13 0.00
201 30 0.01
202 9 0.00
203 10 0.00
204 8 0.00
205 2 0.00
206 18 0.01
207 9 0.00
208 9 0.00
209 23 0.01
210 17 0.01
211 234 0.09
212 142 0.05
213 302 0.11
214 208 0.08
215 552 0.21
216 590 0.22
217 110 0.04
218 2 0.00
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (210 bp):
GAACTTTCGAACTTGTCAAACATTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAG
ATGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCATCGGGAAATCGTATAATTTGGTCT
AAATAGTTTGTCATTTTGTAAACAACTTTTTGTTTTAAATTAAAACTTATTTACGTAAGAATTTT
CTCTCTGTTCTTGGA
Found at i:413806 original size:216 final size:216
Alignment explanation
Indices: 412921--415136 Score: 2316
Period size: 216 Copynumber: 10.3 Consensus size: 216
412911 ATGAGTTCTT
* * * **
412921 TTCAAGACGATCCATTCCTTTGACCAATTTTAT-GAACATTCTATGCTCGAGAAATCAAATCATT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTT-TCGAACATTCCATGCTCGAGAAATCGCATCATT
** * * * * *
412985 AAGTCTAAATAGTTTTTCACTTTGTAAACAACATTTGGTCTTTGAATTAAAAACTTTTTTATGTG
65 TGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * * * *
413050 AGAATTGTTTCCCTCTT-GCTCATTGACCTAAC-TTCTTAACTTGTCAAACTTTTACAAGTTCTT
130 AGAATTGTTTCTCTCTTGGTTC-TTGGCCGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTT
* *
413113 TTATAACTTCGGTTCCTTAAAGTTT
193 TTATAACTTTGGTTCCTTAAAG-TA
* * * * *
413138 TTCAATACGATCTATTCCTTCGAGCAA-TTTTCTGAACATTCCATGCTCGGGTAATCTCATCATT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCGCATCATT
* ** * * *
413202 TGGTCTAAATAATTTACCA---TGTAAATAACATTTGGACTTTGAATTAAAAACTTATTTACGTG
65 TGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * * *
413264 AGAATTCTTTCTCTCTTGGTTCTAGGCCAAAATCT-GAACTTGTCAAACTTTTACGAGTTCTTTT
130 AGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
* *
413328 ATTACTTTGATTCCTTAAAGTA
195 ATAACTTTGGTTCCTTAAAGTA
* * ** * * *
413350 TTCAATAGGATCCATTTATTCGAGCAA-TTTTCAGAACATTCCTTGATCGAGAAATTGCATCATT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCGCATCATT
* * * * * *
413414 TGGTCTAAATAGTATGCCAATTTGTAAGCAAATTTTGGTCTGTGAATTAAAAACTTATTTACGTG
65 TGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * *
413479 AGAATTGTTTCTCTCTTAGTCCTTGGCCTAAC-TT--AACTTGTCAAACTTTTACAAGTTCTTTT
130 AGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
* * *
413541 ACAACTTCGGTT-CTTCTAAGTA
195 ATAACTTTGGTTCCTT-AAAGTA
* * * *
413563 TTCAAGACGATCCATTCATAT-GAGCAATTTTTCGAACTTTCCATGCTCTAGAAATCGTATCATT
1 TTCAAGACGATCCATTCCT-TCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATT
* * * * *
413627 TAGTCTAAATAGTTTTTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTCATTTATGTG
65 TGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * * * *
413692 AGAATCGCTCCTCTATTGGTTCTTCGCCAAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
130 AGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
** *
413757 ATAACTTTGGTTCAATAAAATA
195 ATAACTTTGGTTCCTTAAAGTA
* * * *
413779 TTCAAGATGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCACATCATTT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTT
* * * *
413844 GGTC-AAATTGTTAGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTTATTTACGTAA
66 GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
* * * * * * *
413908 GAATTGTTTCTCT-TTTGTTCTTGGACGAACATCCAAACTTATCAAACTTTTACTAGCTT-TTTT
131 GAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAG-TTCTTTT
*
413971 ATTACTTTGGTTCCTTAAAGTA
195 ATAACTTTGGTTCCTTAAAGTA
** * * *
413993 TTTGAGACGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATTCTCTGA-AAATCACATCATT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTC-GAGAAATCGCATCATT
* * * *
414057 TGGTCTAAATAGTTTATCATTTTGTAAACAACATTTGATCTTTTGAATTCAAAACTTATTTACGT
65 TGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC-TTTGAATTAAAAACTTATTTACGT
* * ** * * ** *
414122 GAGAATTGTTTTTCACTTGGTTCTTGGATGAACTTCCGAACTTGCCAAACAATTAAGAGTTCTTT
129 GAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTT
* * * * *
414187 TGTAACTTCGGATCCTGAGAGTA
194 TATAACTTTGGTTCCTTAAAGTA
* * * * * *
414210 CTT-AAGACGATCCATTCCTT-AATCCAATTTTTCGAACTTTCCATGCCCGAG-ATTCACATCAT
1 -TTCAAGACGATCCATTCCTTCGA-GCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCAT
* * * * * *
414272 TTGGTCTAAAAACTTTGTCATTTCGTAAACAACTTTTCGTCTTCGAATTAAAAACTTAATTACGT
64 TTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT
* * ** * * *
414337 AAGAATTGTTTCTCTCTTGGTTCTAGGATGAACTTACAAACTAGTCAAACTTTTACGAGTTCTTT
129 GAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTT
414402 TATAACTTTGGTTCCTTAAAGTA
194 TATAACTTTGGTTCCTTAAAGTA
* * * *
414425 TTCAAGACTATCCATTCGTTCGAGCAATTTTTTGAACATTCCATACTCTG-GAAATCGCATCATT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTC-GAGAAATCGCATCATT
* * *
414489 TGGTCTAAATAGTATGCCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTAATTTACGTG
65 TGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * * * * * *
414554 AGAATTGTTTCTCTCTTGGTCCTTGGCCTAAC-TTCTTAACTTGTCGAACTTTTATGAGTTATTC
130 AGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTT
* ** *
414618 TACAACTTCAGTT-CTTCTAAGTA
194 TATAACTTTGGTTCCTT-AAAGTA
* * * *
414641 TTCAAGACGATCCATTCATTTGAACAA-TTTTCTGAACTTTCCATGCTCGAGAAATCGCATCATT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCGCATCATT
* * *
414705 TGGTCTAAATAGTTTATCATTTTGTAAACATCTTTTGGTCTTTGAATTTAAAAACTTA-TTAAGT
65 TGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA-TTAAAAACTTATTTACGT
* * * *
414769 GAGAATTGTTTCTCTCTTAGTTCTTGGCTGAACTTTCGAACTTGGCAAACTTCTACGAGTTCTTT
129 GAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTT
414834 TATAACTTTGGTTCCTTAAAGTA
194 TATAACTTTGGTTCCTTAAAGTA
* * * * * * *
414857 ATCAAGATGATCCATTCCTTTGAGCAA-TTTTCTGAACATTCCATACTTGGGAAATCGTATCATT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCGCATCATT
*
414921 TGGTCTAAATTA-TTAGTCATTTTGTAAACAACTTTTGGT-TTTAGAATTAAAAACTTATTTACG
65 TGGTCTAAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTT-GAATTAAAAACTTATTTACG
** * * ** * * *
414984 CAATAATTGTTTCTCTCTT-GTTCTAGGATGAACTTCCGAACTTGTCAAAATTTTACTAGTTCTT
128 TGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTT
* *
415048 TCATAACTTTGGTTCATTAAAGTA
193 TTATAACTTTGGTTCCTTAAAGTA
* * * ** * *
415072 TTCAAGACGATCCATTTCTTCAAGCAA-TTTTCCATACATTAAATGCTCTAGAAATCACATCATT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-ACATTCCATGCTCGAGAAATCGCATCATT
415136 T
65 T
415137 TGTAAAAAAA
Statistics
Matches: 1658, Mismatches: 302, Indels: 80
0.81 0.15 0.04
Matches are distributed among these distances:
212 73 0.04
213 209 0.13
214 188 0.11
215 424 0.26
216 590 0.36
217 172 0.10
218 2 0.00
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (216 bp):
TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTT
GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
GAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTA
TAACTTTGGTTCCTTAAAGTA
Found at i:414734 original size:432 final size:429
Alignment explanation
Indices: 412921--415869 Score: 2687
Period size: 431 Copynumber: 6.9 Consensus size: 429
412911 ATGAGTTCTT
* * * * *
412921 TTCAAGACGATCCATTCCTTTGACCAATTTTATGAACATTCTATGCTCGAGAAATCAAATCATTA
1 TTCAAGACGATCCATT-CTTTGAACAATTTTCTGAACATTCCATGCTCGAGAAATCACATCATTT
* * * * * *
412986 AGTCTAAATAGTTTTTCACTTTGTAAACAACATTTGGTCTTTGAATTAAAAACTTTTTTATGTGA
65 GGTCTAAATAGTTTATCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
* * * *
413051 GAATTGTTTCCCTCTTGCTCATT-GACCT-AACTTCTTAACTTGTCAAACTTTTACAAGTTCTTT
130 GAATTGTTTCTCTCTTGTTC-TTGGA--TGAACTTC-AAACTTGTCAAACTTTTACGAGTTCTTT
* * * * *
413114 TATAACTTCGGTTCCTTAAAGTTTTTCAATACGATCTATTCCTTCGAGCAATTTTCTGAACATTC
191 TATAACTTTGGTTCCTTAAAG-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTC
* * * * * ** * * *
413179 CATGCTCGGGTAATCTCATCATTTGGTCTAAATAATTTACCA---TGTAAATAACATTTGGACTT
255 CATACTCTGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTT
* * **
413241 TGAATTAAAAACTTATTTACGTGAGAATTCTTTCTCTCTTGGTTCTAGGCC-AAAATCTGAACTT
320 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCTAACTTCTGAACTT
* * * *
413305 GTCAAACTTTTACGAGTTCTTTTATTACTTTGATTCCTTAAAGTA
385 GTCAAACTTTTATGAGTTCTTTTATAACTTTGGTTCATTAAAGTA
* * * * * * **
413350 TTCAATAGGATCCATT-TATTCGAGCAATTTTCAGAACATTCCTTGATCGAGAAATTGCATCATT
1 TTCAAGACGATCCATTCT-TT-GAACAATTTTCTGAACATTCCATGCTCGAGAAATCACATCATT
* ** * * * *
413414 TGGTCTAAATAGTATGCCAATTTGTAAGCAAATTTTGGTCTGTGAATTAAAAACTTATTTACGTG
64 TGGTCTAAATAGTTTATCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * *
413479 AGAATTGTTTCTCTCTTAGTCCTTGGCCT-AACTT--AACTTGTCAAACTTTTACAAGTTCTTTT
129 AGAATTGTTTCTCTCTT-GTTCTTGG-ATGAACTTCAAACTTGTCAAACTTTTACGAGTTCTTTT
* * * * * *
413541 ACAACTTCGGTT-CTTCTAAGTATTCAAGACGATCCATTCATAT-GAGCAATTTTTCGAACTTTC
192 ATAACTTTGGTTCCTT-AAAGTATTCAAGACGATCCATTCCT-TCGAGCAATTTTTTGAACATTC
* * * * * *
413604 CATGCTCTAGAAATCGTATCATTTAGTCTAAATAGTTTTTCATTTTATAAACAACTTTTGGTCTT
255 CATACTCTGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTT
* * * * * * * *
413669 TGAATTAAAAACTCATTTATGTGAGAATCGCTCCTCTATTGGTTCTTCGCCAAACTT-TCGAACT
320 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCTAACTTCT-GAACT
* * *
413733 TGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCAATAAAATA
384 TGTCAAACTTTTATGAGTTCTTTTATAACTTTGGTTCATTAAAGTA
* * * * *
413779 TTCAAGATGATCCATTCCTTCGAGCAATTTT-TCGAACATTCCATGCTTGGGAAATCACATCATT
1 TTCAAGACGATCCATT-CTTTGAACAATTTTCT-GAACATTCCATGCTCGAGAAATCACATCATT
* *
413843 TGGTC-AAATTG-TTAGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTTATTTACGT
64 TGGTCTAAATAGTTTA-TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT
* * * * * *
413906 AAGAATTGTTTCTCTTTTGTTCTTGGACGAACATCCAAACTTATCAAACTTTTACTAGCTT-TTT
128 GAGAATTGTTTCTCTCTTGTTCTTGGATGAAC-TTCAAACTTGTCAAACTTTTACGAG-TTCTTT
* ** * *
413970 TATTACTTTGGTTCCTTAAAGTATTTGAGACGATCCATTCCTTTGAGCAATTTTTCGAACATTCC
191 TATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCC
* * * * * *
414035 ATTCTCTGAAAATCACATCATTTGGTCTAAATAGTTTATCATTTTGTAAACAACATTTGATCTTT
256 ATACTCTGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC-TT
* * * * *
414100 TGAATTCAAAACTTATTTACGTGAGAATTGTTTTTCACTTGGTTCTTGG-ATGAACTTCCGAACT
320 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCT-AACTTCTGAACT
* ** * * * * * * *
414164 TGCCAAACAATTAAGAGTTCTTTTGTAACTTCGGATCCTGAGAGTA
384 TGTCAAACTTTTATGAGTTCTTTTATAACTTTGGTTCATTAAAGTA
* * * *
414210 CTT-AAGACGATCCATTCCTT-AATCCAATTTT-TCGAACTTTCCATGCCCGAG-ATTCACATCA
1 -TTCAAGACGATCCATTCTTTGAA--CAATTTTCT-GAACATTCCATGCTCGAGAAATCACATCA
* * * * * * *
414271 TTTGGTCTAAAAACTTTGTCATTTCGTAAACAACTTTTCGTCTTCGAATTAAAAACTTAATTACG
62 TTTGGTCTAAATAGTTTATCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * *
414336 TAAGAATTGTTTCTCTCTTGGTTCTAGGATGAACTTACAAACTAGTCAAACTTTTACGAGTTCTT
127 TGAGAATTGTTTCTCTCTT-GTTCTTGGATGAACTT-CAAACTTGTCAAACTTTTACGAGTTCTT
* *
414401 TTATAACTTTGGTTCCTTAAAGTATTCAAGACTATCCATTCGTTCGAGCAATTTTTTGAACATTC
190 TTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTC
* *
414466 CATACTCTGGAAATCGCATCATTTGGTCTAAATAGTATGCCATTTTGTAAACAACTTTTGGTCTT
255 CATACTCTGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTT
* * *
414531 TGAATTAAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTCCTTGGCCTAACTTCTTAACTT
320 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCTAACTTCTGAACTT
* * * * ** *
414596 GTCGAACTTTTATGAGTTATTCTACAACTTCAGTTC-TTCTAAGTA
385 GTCAAACTTTTATGAGTTCTTTTATAACTTTGGTTCATT-AAAGTA
* *
414641 TTCAAGACGATCCATTCATTTGAACAATTTTCTGAACTTTCCATGCTCGAGAAATCGCATCATTT
1 TTCAAGACGATCCATTC-TTTGAACAATTTTCTGAACATTCCATGCTCGAGAAATCACATCATTT
* *
414706 GGTCTAAATAGTTTATCATTTTGTAAACATCTTTTGGTCTTTGAATTTAAAAACTTA-TTAAGTG
65 GGTCTAAATAGTTTATCATTTTGTAAACAACTTTTGGTCTTTGAA-TTAAAAACTTATTTACGTG
* * * *
414770 AGAATTGTTTCTCTCTTAGTTCTTGGCTGAACTTTCGAACTTGGCAAACTTCTACGAGTTCTTTT
129 AGAATTGTTTCTCTCTT-GTTCTTGGATGAAC-TTCAAACTTGTCAAACTTTTACGAGTTCTTTT
* * * *
414835 ATAACTTTGGTTCCTTAAAGTAATCAAGATGATCCATTCCTTTGAGCAATTTTCTGAACATTCCA
192 ATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCA
* *
414900 TACT-TGGGAAATCGTATCATTTGGTCTAAATTA-TTAGTCATTTTGTAAACAACTTTTGGT-TT
257 TACTCT-GGAAATCGCATCATTTGGTCTAAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTT
** * * * *
414962 TAGAATTAAAAACTTATTTACGCAATAATTGTTTCTCTCTT-GTTCTAGG-ATGAACTTCCGAAC
320 T-GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCT-AACTTCTGAAC
* *
415025 TTGTCAAAATTTTACT-AGTTCTTTCATAACTTTGGTTCATTAAAGTA
383 TTGTCAAACTTTTA-TGAGTTCTTTTATAACTTTGGTTCATTAAAGTA
* * ** *
415072 TTCAAGACGATCCATT-TCTTCAAGCAATTTTC-CATACATTAAATGCTCTAGAAATCACATCAT
1 TTCAAGACGATCCATTCT-TTGAA-CAATTTTCTGA-ACATTCCATGCTCGAGAAATCACATCAT
* *
415135 TT--TGT-AA-A----A--A------AAA-AA--TTTGGCCTTAT-AATTAAAAACTTATTTACG
63 TTGGTCTAAATAGTTTATCATTTTGTAAACAACTTTTGGTCTT-TGAATTAAAAACTTATTTACG
* * * * * * * * *
415180 TTAGAATTTTTTCTCTCTTGTTGTTGCACGAACTTTCGAACTTCTCACACTTTTAAGAGTTCTTT
127 TGAGAATTGTTTCTCTCTTGTTCTTGGATGAAC-TTCAAACTTGTCAAACTTTTACGAGTTCTTT
* * * * * * **
415245 TATAACTTCGATTCTTTAAAGTATTCAAGATGATCCAGTCTTTCGAGCAA-TTTTCAAACATTCC
191 TATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCC
** * * * *
415309 A-AGCTAGGGAAATCGTATCATTTGGTCTAAATTGTTAGTCATTTTGTAAACAACTTTTGGTTTT
256 ATA-CTCTGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTT
* *
415373 TGAATTAAAAACTTA-TT---T----A-TG----TCTCTT-GTTCTTGGACGAACTTCTGAACTT
320 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCTAACTTCTGAACTT
*
415424 GTCAAA-ATTTACT-AGTT-TTTT-TAACTTTGGTTCATTAAAGTA
385 GTCAAACTTTTA-TGAGTTCTTTTATAACTTTGGTTCATTAAAGTA
* * * * **
415466 TTCAAGATGATCCGTTTCTTCGAGCAATTTTCTGAACATTCCATGCTCTG-GAAATTGCATCATT
1 TTCAAGACGATCC-ATTCTTTGAACAATTTTCTGAACATTCCATGCTC-GAGAAATCACATCATT
* * * * *
415530 TGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTGGTCTTAT-ACTTAAAAACTTACTTAAGT
64 TGGTCTAAATAGTTTATCATTTTGTAAACAACTTTTGGTCTT-TGAATTAAAAACTTATTTACGT
* * * * * ** * * *
415594 TAGAATTGCTTCTCTCCTGTTGTTGCACAAACTTCAGAACTTCTCACACTTTTTCGAGTTCTTTT
128 GAGAATTGTTTCTCTCTTGTTCTTGGATGAACTTCA-AACTTGTCAAACTTTTACGAGTTCTTTT
* * * * * * *
415659 ATAACTTTGATTCCTTAAAGTATTCAAGACAATTCAGTCCTTCGAGCAATTTTCT-AGACTTTTC
192 ATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGA-ACATTCC
* * * * * *
415723 ATGCACGGGAAATCGCATAATTTGGTCTAAATAGTTT-TCCATTTTATAAACAACTTTTTGTCTT
256 ATACTCTGGAAATCGCATCATTTGGTCTAAATAGTTTGT-CATTTTGTAAACAACTTTTGGTCTT
* * * * *
415787 TAAATTAATAACTTATTTACGTGAGAA----TT-TCTCTTAGTTCTTGGACGAACTT-TCGAACT
320 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCTAACTTCT-GAACT
* * *
415846 TGTCAAACATTTACGAGTTATTTT
384 TGTCAAACTTTTATGAGTTCTTTT
415870 CAACACGACC
Statistics
Matches: 2085, Mismatches: 333, Indels: 208
0.79 0.13 0.08
Matches are distributed among these distances:
394 65 0.03
395 8 0.00
396 13 0.01
397 33 0.02
398 1 0.00
401 2 0.00
402 1 0.00
404 1 0.00
409 4 0.00
410 82 0.04
411 96 0.05
412 34 0.02
413 127 0.06
414 73 0.04
415 5 0.00
418 1 0.00
421 1 0.00
422 8 0.00
423 29 0.01
424 9 0.00
425 74 0.04
426 43 0.02
427 13 0.01
428 127 0.06
429 233 0.11
430 156 0.07
431 417 0.20
432 412 0.20
433 17 0.01
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.41
Consensus pattern (429 bp):
TTCAAGACGATCCATTCTTTGAACAATTTTCTGAACATTCCATGCTCGAGAAATCACATCATTTG
GTCTAAATAGTTTATCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
AATTGTTTCTCTCTTGTTCTTGGATGAACTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAA
CTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATACT
CTGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCTAACTTCTGAACTTGTCAAA
CTTTTATGAGTTCTTTTATAACTTTGGTTCATTAAAGTA
Found at i:416448 original size:216 final size:216
Alignment explanation
Indices: 415942--417020 Score: 1016
Period size: 215 Copynumber: 5.0 Consensus size: 216
415932 GAGACTAAAT
** * * * * *
415942 AGTTCTTTTATTACTTCGGTTCCTT-AAAGTATTCAATAGGATCCATTTATTTGAGCAATTTTCA
1 AGTTCTTTTACAACTTCGGTT-CTTCTAAGTATTCAAGACGATCCATTCATTTGAGCAATTTTCC
* * *
416006 GAACATTCCATGAC-CAAGAAATCGCATCATTTGGTCTAAATAGTATGCCATTTTGTAAGCAAAT
65 GAACATTCCATG-CTCAAGAAATCGCATCATTTGGTCTAAATAGTATGTCATTTTGTAAACAACT
* * * *
416070 TTTGGTCTGTGAATTAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTTAA--
129 TTTGGTCTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGCCTAACT
*
416133 -CTTAACTTGTCAATCTTTTACG
194 TCTTAACTTGTCAAACTTTTACG
* * *
416155 AGTCCTTTTACAACTTCGGTTCTTCTAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTTCG
1 AGTTCTTTTACAACTTCGGTTCTTCTAAGTATTCAAGACGATCCATTCATTTGAGCAATTTTCCG
* * * * * *
416220 AACTTTCCATGCTC-TGAAAATAGTACCATTTGGTCTAAATAGTATGTTATTTTGTAAACAACTT
66 AACATTCCATGCTCAAG-AAATCGCATCATTTGGTCTAAATAGTATGTCATTTTGTAAACAACTT
* *
416284 TTGCTCTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTCCTTGGCCTAACTT
130 TTGGTCTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGCCTAACTT
*
416349 CTTAACTTGTCAAACTTTTATG
195 CTTAACTTGTCAAACTTTTACG
* **
416371 AGTTCTTTTACAACTTCGGTTCTTCTAAGTATTCAAGACGATCCATTCATTTGAGTAATTTTTTG
1 AGTTCTTTTACAACTTCGGTTCTTCTAAGTATTCAAGACGATCCATTCATTTGAGCAATTTTCCG
* *
416436 AAC-TTCCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTCTCATTTTGTAAACAACTT
66 AACATT-CCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTATGTCATTTTGTAAACAACTT
* ** * *
416500 TTGGTCTTTGAATTAAAAACTTA-TTAAGGGAGAATTGTTTCTCTCTTGGTTCTTGGTCGAACTT
130 TTGGTCTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGCCTAACTT
** *
416564 -TCGGACTTGGCAAACTTTTACG
195 CT-TAACTTGTCAAACTTTTACG
* * * * * * *
416586 AGTTCTTTTATAACTTTGGTTC--CATAAAGTAATCAAGACAATCAATTCCTTTGAGTAATTTTC
1 AGTTCTTTTACAACTTCGGTTCTTC-T-AAGTATTCAAGACGATCCATTCATTTGAGCAATTTTC
** * * *
416649 CGAACATTCCATGCTCGGGAAATCGTATCATTTGGTCTAATTTGT-TAGTCATTTTGTAAACAAC
64 CGAACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTAT-GTCATTTTGTAAACAAC
* * * * * * * * *
416713 TTTAT-ATTTTTAAATTAAAAACTTATTTACGTAATAATTGCTTCTCTCCT-ATTGTT-GCACAA
128 TTT-TGGTCTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGC-CTA
** ** * *
416775 ACTTCCGAACTTCACACACTTTAACG
191 ACTTCTTAACTTGTCAAACTTTTACG
* ** * * * * * * *
416801 AGTTCTTTTATAACTTCAATTCCTT-AAAGTATTCAAGATGATCTAGTCCTTCGAGCTATTTT-C
1 AGTTCTTTTACAACTTCGGTT-CTTCTAAGTATTCAAGACGATCCATTCATTTGAGCAATTTTCC
* * * * * * * *
416864 TAGACATTTCATGCACAGGAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTGAACAACT
65 GA-ACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTATGTCATTTTGTAAACAACT
* * * * * * * *
416929 TTTTGTCTTTAAAGTAATAACTTATTTACGTGAGAA----TT-TCTCTTGATTCTTGGACAAACT
129 TTTGGTCTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGCCTAACT
* * *
416989 T-TCGAACTTGTCCAACATTTACG
194 TCT-TAACTTGTCAAACTTTTACG
417012 AGTTCTTTT
1 AGTTCTTTT
417021 CAAGACGATC
Statistics
Matches: 720, Mismatches: 120, Indels: 54
0.81 0.13 0.06
Matches are distributed among these distances:
210 5 0.01
211 37 0.05
212 6 0.01
213 159 0.22
214 7 0.01
215 327 0.45
216 178 0.25
217 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.41
Consensus pattern (216 bp):
AGTTCTTTTACAACTTCGGTTCTTCTAAGTATTCAAGACGATCCATTCATTTGAGCAATTTTCCG
AACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTATGTCATTTTGTAAACAACTTT
TGGTCTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGCCTAACTTC
TTAACTTGTCAAACTTTTACG
Found at i:416663 original size:215 final size:215
Alignment explanation
Indices: 415942--420350 Score: 2126
Period size: 213 Copynumber: 21.0 Consensus size: 215
415932 GAGACTAAAT
* * * ** * *
415942 AGTTCTTTTATTACTTCGGTTCCTTAAAGTATTCAATAGGATCCATTTATTTGAGCAATTTTCAG
1 AGTTCTTTTATAACTTCGGTTCC-TAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTCCG
* * * *
416007 AACATTCCATGAC-CAAGAAATCGCATCATTTGGTCTAAATAGTATGCCATTTTGTAAGCAAATT
65 AACATTCCATG-CTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * *
416071 TTGGTCTGTGAATTAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG-CTTAAC-
129 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-AAACT
*
416134 TT--AACTTGTCAATCTTTTACG
193 TTCGAACTTGTCAAACTTTTACG
* * * *
416155 AGTCCTTTTACAACTTCGGTTCTTCT-AAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTTC
1 AGTTCTTTTATAACTTCGGTTC--CTAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTCC
* * * * * * *
416219 GAACTTTCCATGCTC-TGAAAATAGTACCATTTGGTCTAAATAGTATGTTATTTTGTAAACAACT
64 GAACATTCCATGCTCAAG-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * * *
416283 TTTGCTCTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTCCTTGGCCTAAC-
128 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACT
* *
416347 TTCTTAACTTGTCAAACTTTTATG
193 TTC-GAACTTGTCAAACTTTTACG
* * **
416371 AGTTCTTTTACAACTTCGGTTCTTCT-AAGTATTCAAGACGATCCATTCATTTGAGTAATTTTTT
1 AGTTCTTTTATAACTTCGGTTC--CTAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTCC
*
416435 GAAC-TTCCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTCTCATTTTGTAAACAACT
64 GAACATT-CCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * *
416499 TTTGGTCTTTGAATTAAAAACTTA-TTAAGGGAGAATTGTTTCTCTCTTGGTTCTTGGTCGAACT
128 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACT
* *
416563 TTCGGACTTGGCAAACTTTTACG
193 TTCGAACTTGTCAAACTTTTACG
* * * *
416586 AGTTCTTTTATAACTTTGGTTCCATAAAGTAATCAAGACAATCAATTCCTTTGAGTAATTTTCCG
1 AGTTCTTTTATAACTTCGGTTCC-TAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTCCG
** * * * *
416651 AACATTCCATGCTCGGGAAATCGTATCATTTGGTCTAATTTGTTAGTCATTTTGTAAACAACTTT
65 AACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * * * * * * * * *
416716 AT-ATTTTTAAATTAAAAACTTATTTACGTAATAATTGCTTCTCTCCT-ATTGTTGCACAAACTT
130 -TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTT
* ** * *
416779 CCGAACTTCACACACTTTAACG
194 TCGAACTTGTCAAACTTTTACG
** * * * *
416801 AGTTCTTTTATAACTTCAATTCCTTAAAGTATTCAAGATGATCTAGTCCTTCGAGCT-ATTTT-C
1 AGTTCTTTTATAACTTCGGTTCC-TAAAGTATTCAAGACGATCCATTCCTTTGAG-TAATTTTCC
* * * * * * *
416864 TAGACATTTCATGCACAGGAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTGAACAACT
64 GA-ACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * * *
416929 TTTTGTCTTTAAAGTAATAACTTATTTACGTGAGAA----TT-TCTCTTGATTCTTGGACAAACT
128 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACT
* *
416989 TTCGAACTTGTCCAACATTTACG
193 TTCGAACTTGTCAAACTTTTACG
* ** * * *
417012 AGTTCTTTTCA-AGACGATCCATTCCTTTGACCAA-T-TTTATGA--A--CATT-CTATGCTGGG
1 AGTTCTTTT-ATA-AC-TTCGGTTCC--T-A--AAGTATTCAAGACGATCCATTCCT-T--TGAG
* * ** * * *** * * **
417069 GAA--AT-C--ACA-TCTTTGAGTCTAA-ATAGT-TTTTCACTTT-G--TAAACGACTTT-TGGT
55 TAATTTTCCGAACATTCCATG-CTC-AAGA-AATCGCATCA-TTTGGTCTAAA-TAGTTTGTCAT
* ** * * * **** ** **
417122 GTCTGAATTAAA-AAC--TT--T-TTT-ACGTGAGAA-TTGTTT-C-TCTCTTATTCCTTGGC-C
115 -TTTG---TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT-GAGAATTGTTTCTCTC
*** *
417176 TAACTTCTT-----AACTTGTCAAAC-T-T-----TT--ACG
175 TTGGTTCTTGGACAAACTT-TCGAACTTGTCAAACTTTTACG
* **** *** * * * ** * * *
417204 AGTTCTTTTAGAACTTCGATTCGTTAAAGTTTTTAATACGATATATTCCTTCGAGCAATTTTCCA
1 AGTTCTTTTATAAC-TTCGGTTCCTAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTCCG
* * * * *
417269 AAAATTCCATGCTC-GGATAATCTCATCATTTGGTCTAAATTGTTTGTCATTTTGTAAAAAACTT
65 AACATTCCATGCTCAAGA-AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * * * * *
417333 TTGGACTTTGAATTAAAAAACTTATTCACGTGAGAATTGTTTCTCTCTTTTGTCCTTGGCCAAAA
129 TTGGTCTTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTC-TTGGTTCTTGGACAAAC
***
417398 AGACGAACTTGTCAAACTTTTACG
192 TTTCGAACTTGTCAAACTTTTACG
* * ** ** ** *
417422 AG-------------TCGGTTCCTTAAATTATTCAAAACGATCCATTTATTCAAACAATTTTCAG
1 AGTTCTTTTATAACTTCGGTTCC-TAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTCCG
** * * * * * **
417474 AACATTCCATAATCGAGAAACCACTTCTTTTGGTCTAAATAGCATGTCATTTTGTAAACAACTTT
65 AACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * * * *
417539 TGGTCTGTGAATTAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTCCTTGGCCTAAC--T
130 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTT
*
417602 -AAACTTGTCAAACTTTTACG
195 CGAACTTGTCAAACTTTTACG
* * * * * * * ** * *
417622 AGCTATTTTACAACTTTGATTCTTCT-AAGTATTAAAGACAATCCATTTATTTCAGCAATTTTCC
1 AGTTCTTTTATAACTTCGGTTC--CTAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTCC
* * * * *
417686 TAACTTTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATGGTATGTCATTTTGTAAACAACTT
64 GAACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * * * *
417751 TTGGTCTTTGGATTAAAAACTTGTTTATGTGAGAATTGTTTCTCTCTTGG-TCATAGGCCAAAC-
129 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TTGGACAAACT
*
417814 TTCTTAACTTGTCAAACTTTTACG
193 TTC-GAACTTGTCAAACTTTTACG
** ** * * *
417838 AGTTCTTTTACGACTTCTATTCTTCT-TAGTATTCAAGACGATCCATTCCTTCGAGCAACTTTT-
1 AGTTCTTTTATAACTTCGGTTC--CTAAAGTATTCAAGACGATCCATTCCTTTGAGTAA-TTTTC
* * * * *
417901 CGAACTTTCCACGCTCGAGAAATTGCATCATTTGGTCTAAATAGTATT-TCATTTTGTAAACAAG
63 CGAACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGT-TTGTCATTTTGTAAACAAC
* * * * * *
417965 TTTTGGTCTTTGAATTAAAAACTCATTTATGTGAGAATCGTTTCTCTCTTGGTTCTTCGTCGAAC
127 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAAC
* * * *
418030 -TCCGGATCTTGTCAAAATTTTATG
192 TTTC-GAACTTGTCAAACTTTTACG
* * *
418054 AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACTATCCATTCCTTCT-AGCAATTTTCC
1 AGTTCTTTTATAACTTCGGTTCC-TAAAGTATTCAAGACGATCCATTCCTT-TGAGTAATTTTCC
* * * * **
418118 AAACTTTCCATGCTCGAG-AATAGCATCATTTGGTCTAAA-A-ACTGTCATTTTGTAAACAACTT
64 GAACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * * *
418180 TTGGTCTTTGATTTAAAAACTTATTTACTTAAGAATTGTTTCTCTCTTGGTTCTAGGACAAACTT
129 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTT
* * * * *
418245 ACAAACTAGTCAAAATTTTACA
194 TCGAACTTGTCAAACTTTTACG
* * * * * *
418267 AGTTCTTTTATCATTTTGGTTACTTAAAGTATTC-A-A-GATCCATTCCTTCGAGCAATTTTCCG
1 AGTTCTTTTATAACTTCGGTT-CCTAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTCCG
* *
418329 AACATTCCATGCTCGAGAAATCGCACCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
65 AACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * *
418394 TGGTCCTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTCCTTGG-CTTAAA--
130 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC--AAACT
* *
418456 -T---AGTTGTCAAACTTTTATG
193 TTCGAACTTGTCAAACTTTTACG
* * * * * ** * *
418475 ACTTCTTTTACAACTTCGATTCTTCT-AAGTATTCAAAATGATCCATTAATTTGAGCAATTTTTC
1 AGTTCTTTTATAACTTCGGTTC--CTAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTCC
* * * **
418539 AAACTTTTCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTAGTCATTTTGTAAACAACT
64 GAACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTT-GTCATTTTGTAAACAACT
* * * * *
418604 CTTGG-----GAGTTAAAAACTTA-TTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGTCGAACT
128 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACT
** *
418663 TTCGAACTTGGAAAACTTTTATG
193 TTCGAACTTGTCAAACTTTTACG
* * * * * *
418686 AGTTCTTTTATAACTTTGGTTCCTTAAAGTAATCAAGACGATCCATTCCTTCGGGCAA-TTTCTG
1 AGTTCTTTTATAACTTCGGTTCC-TAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTCCG
* ** * * * * * *
418750 AACATTCCAAGCT-GGGGAATCGTATCATTTGATCTAAATTGTTAGTCACTTTGTAAACAACTTT
65 AACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * *
418814 TGGTTTTTGAATTAAAAACTT-TTT---T----A-CG----TCTCTT-GTTCTTGGACGAACTTT
130 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTT
*
418865 CGAACTTGTCAAA-ATTTACTG
195 CGAACTTGTCAAACTTTTAC-G
* * * * * ** * * * *
418886 -GTTTTTTTTATAAATTTGGTTCATTAAAGTATTCAAAACGATCTGTTTCTTCGAGCAATTTTCT
1 AG-TTCTTTTATAACTTCGGTTC-CTAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTCC
** *
418950 GAACATTCCATGCTCTGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AACAAATT
64 GAACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * * * * * * **
419014 TTCGTCTTAT-ACTTAAAAACTTACTTACATTAGAATTGTTTCTCTCCT-GTTGTAACG-CAAAC
129 TTGGTCTT-TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGACAAAC
* * *
419076 TTTCGAACTTCTCACACTTTTTCG
192 TTTCGAACTTGTCAAACTTTTACG
* * * * * * ** * ** * *
419100 AGTTCTTTTATAACTTTGATTCCTTCAAGCATTTAAGATGAAACAATCCTTCAAGCAATTTT-CT
1 AGTTCTTTTATAACTTCGGTTCC-TAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTCCG
* * * * * * * *
419164 AGACTTTTCATGCACGAGAAATTGTATAATTTGGTCTAAATAGTTTGCCATTTTGTAAACAACTT
65 A-ACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * * **
419229 TTTGTCTTTAAATTAATAACTTATTTACGTGAGAA----TT-TCTCTTGGTTCTTGGATGAACTT
129 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTT
* * *
419289 TCAAACTTGTCAAACATTTATG
194 TCGAACTTGTCAAACTTTTACG
* ** * ** *
419311 AGTTCTTTTCA-AGACAATCCATT-C---A-T-TT---GAC---CAATT--TTATGAACATTTTA
1 AGTTCTTTT-ATA-AC-TTCGGTTCCTAAAGTATTCAAGACGATCCATTCCTT-TGAGTAATTT-
* * * * ** * ** *
419361 TGCTCGAGA-AATCAAAT-CATTAAGTCTAAATAGTTTTTCACCTT-GTAAACAACA-TTTGGT-
61 T-C-CGA-ACATTC-CATGC-TCAAG---AAATCG--CATCA-TTTGGTCTA-AATAGTTT-GTC
* * * * *** **
419421 -TTTTGAATTAAA-AACTTTT--T-TATG---TGAGAA-TTGTTT-C-T--CTCTTGCTCATTGA
113 ATTTTG---TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-T--TTCT
*** *
419473 C-CTAACTTCTT-----AACTTGTCAAAC-T-T-------TTACG
172 CTCTTGGTTCTTGGACAAACTT-TCGAACTTGTCAAACTTTTACG
**** * * * * * * * * *
419503 AGTTCTTTTATAACTTCAATTCCTTAAAGTTTTCAATATGATCTATTCCTTCGAGCAATTTTCTG
1 AGTTCTTTTATAAC-TTCGGTTCCTAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTCCG
** * * ** * *
419568 AACATTCCATGCTCGGGTAATCTCATCATTTGGTCTAAATAGTTTACCA---TGTAAATAACATT
65 AACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * * * * * * *
419630 TAGACTTTGAATTAAAAACTTATTTACGTGAGAATTCTTTTTTTCTTGGTTCTAGGTCGAAA-AT
130 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-AAACTT
* *
419694 CCGAACTTGTCAATCTTTTACG
194 TCGAACTTGTCAAACTTTTACG
* * * * * * ** * * * **
419716 AGTTCCTTTATTACTTCGATTCCTTAAAGTATTCAATAGGGTCCATTTATTCGAGCAGTTTTTAG
1 AGTTCTTTTATAACTTCGGTTCC-TAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTCCG
* * * * * *
419781 AACATTCCATGATCGAGAAATCGCATCATTTGGTCTAAATAGTATGCCATTTTGTAACCAAATTT
65 AACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
* * * * * *
419846 TGGT-TTGTGAATCAAAAACTTATTAACGTGAGAATTG--TCTCTCTTGATCCTTGGCCTAAC--
130 TGGTCTT-TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTT
419906 TC-AACTTGTCAAACTTTTACG
194 TCGAACTTGTCAAACTTTTACG
* * * * * * *
419927 AGTTCTTTTACAACTTCAGTTCTTCT-AAGTATTCAAAACGATCCGTTCATTTGAGCAATTTTCA
1 AGTTCTTTTATAACTTCGGTTC--CTAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTCC
* * ** *
419991 TAACTTTCCATGCTCTGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
64 GAACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * * * **
420056 TTGATCTTTTGAATTAAAAACTTATTTACGTGAGAATTTTTTTTCTCTTGGCTCTTGGATGAACT
129 TTGGTC-TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACT
* * * *
420121 TCCGAACTTGCCAAACATTTAAG
193 TTCGAACTTGTCAAACTTTTACG
* * * * * *
420144 AGTTCTTTTGTAACTTTGGATCCTGAGAGTACTCAAGACGATCCATTCC-TT-AATCCAATTTTC
1 AGTTCTTTTATAACTTCGGTTCCT-AAAGTATTCAAGACGATCCATTCCTTTGAGT--AATTTTC
* * * * * * * * * *
420207 TGAACTTTCCATGCTC-GGGAATTGCATTATTTGGTCTAAAAACTTTGTCTTTTTGTGAACAACT
63 CGAACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * * * * * *
420271 TTTGGTCGTCGAAGTAAAAACTTAATCACGTAAGAATTGTTTCTCTCTTGGTTCTAGGACGAACT
128 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACT
* * *
420336 TACAAACTAGTCAAA
193 TTCGAACTTGTCAAA
420351 TTGATATGAA
Statistics
Matches: 3208, Mismatches: 710, Indels: 554
0.72 0.16 0.12
Matches are distributed among these distances:
186 2 0.00
187 1 0.00
188 6 0.00
189 1 0.00
190 9 0.00
191 14 0.00
192 32 0.01
193 9 0.00
194 19 0.01
195 19 0.01
196 13 0.00
197 15 0.00
198 7 0.00
199 19 0.01
200 127 0.04
201 72 0.02
202 56 0.02
203 46 0.01
204 47 0.01
205 122 0.04
206 53 0.02
207 33 0.01
208 76 0.02
209 56 0.02
210 78 0.02
211 348 0.11
212 68 0.02
213 618 0.19
214 164 0.05
215 469 0.15
216 522 0.16
217 82 0.03
218 5 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (215 bp):
AGTTCTTTTATAACTTCGGTTCCTAAAGTATTCAAGACGATCCATTCCTTTGAGTAATTTTCCGA
ACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTTC
GAACTTGTCAAACTTTTACG
Found at i:418244 original size:429 final size:429
Alignment explanation
Indices: 417019--420336 Score: 2442
Period size: 429 Copynumber: 7.9 Consensus size: 429
417009 ACGAGTTCTT
* * * * * *
417019 TTCAAGACGATCCATTCCTTTGACCAATTTT-ATGAACATTCTATGCTGGGGAAATCACATC-TT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTCA-GAACATTCCATGCTCGAGAAATCGCATCATT
* * * * * *
417082 TGAGTCTAAATAGTTTTTCACTTTGTAAACGACTTTTGGTGTCTGAATTAAAAACTTTTTTACGT
65 TG-GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT
* * * *
417147 GAGAATTGTTTCTCTCTT-ATTCCTTGGCCTAACTTCTTAACTTGTCAAACTTTTACGAGTTCTT
129 GAGAATTGTTTCTCTCTTGGTT-CTTGGTCGAAC-TC-GAACTTGTCAAACTTTTACGAGTTCTT
* * * * * * ** * * **
417211 TTAGAACTTCGATTCGTTAAAGTTTTTAATACGATATATTCCTTCGAGCAATTTTCCAAAAATTC
191 TTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCATT-TAGCAATTTTCCAAACTTTC
* * * * *
417276 CATGCTCG-GATAATCTCATCATTTGGTCTAAATTGTTTGTCATTTTGTAAAAAACTTTTGGACT
255 CATGCTCGAGA-AATCGCATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCT
* * * * * ***
417340 TTGAATTAAAAAACTTATTCACGTGAGAATTGTTTCTCTCTTTTGTCCTTGGCCAAAAAGAC-GA
319 TTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTC-TTGGTTCTAGGAC-AAACTTCTGA
** * *
417404 ACTTGTCAAACTTTTACGAG-TCGGTT-C--C-T-TA-------AATTA
381 ACTTGTCAAACTTTTACGAGTTCTTTTACAACTTCTATTCTTCTTAGTA
* ** * * ** * * * *
417440 TTCAAAACGATCCATTTATTCAAACAATTTTCAGAACATTCCATAATCGAGAAACCACTTCTTTT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTCAGAACATTCCATGCTCGAGAAATCGCATCATTT
** *
417505 GGTCTAAATAGCATGTCATTTTGTAAACAACTTTTGGTCTGTGAATTAAAAACTTATTTACGTGA
66 GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
* * * * * * * *
417570 AAATTGTTTCTCTCTTGGTCCTTGGCCTAACT-AAACTTGTCAAACTTTTACGAGCTATTTTACA
131 GAATTGTTTCTCTCTTGGTTCTTGGTCGAACTCGAACTTGTCAAACTTTTACGAGTTCTTTTATA
* * * * *
417634 ACTTTGATT-CTTCTAAGTATTAAAGACAATCCATTTATTTCAGCAATTTTCCTAACTTTCCATG
196 ACTTTGATTCCTT-AAAGTATTCAAGACGATCCATTCATTT-AGCAATTTTCCAAACTTTCCATG
* *
417698 CTCGAGAAATCGCATCATTTGGTCTAAAT-GGTATGTCATTTTGTAAACAACTTTTGGTCTTTGG
259 CTCGAGAAATCGCATCATTTGGTCTAAATAGAT-TGTCATTTTGTAAACAACTTTTGGTCTTTGA
* * * *
417762 ATTAAAAACTTGTTTATGTGAGAATTGTTTCTCTCTTGG-TCATAGGCCAAACTTCTTAACTTGT
323 ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TAGGACAAACTTCTGAACTTGT
*
417826 CAAACTTTTACGAGTTCTTTTACGACTTCTATTCTTCTTAGTA
387 CAAACTTTTACGAGTTCTTTTACAACTTCTATTCTTCTTAGTA
* * *
417869 TTCAAGACGATCCATTCCTTCGAGCAACTTTTC-GAACTTTCCACGCTCGAGAAATTGCATCATT
1 TTCAAGACGATCCATTCCTTCGAGCAA-TTTTCAGAACATTCCATGCTCGAGAAATCGCATCATT
* * *
417933 TGGTCTAAATAGTATT-TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTCATTTATGT
65 TGGTCTAAATAGT-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT
* * * * *
417997 GAGAATCGTTTCTCTCTTGGTTCTTCGTCGAACTCCGGATCTTGTCAAAATTTTATGAGTTCTTT
129 GAGAATTGTTTCTCTCTTGGTTCTTGGTCGAACT-C-GAACTTGTCAAACTTTTACGAGTTCTTT
* * *
418062 TATAACTTTGGTTCCTTAAAGTATTCAAGACTATCCATTCCTTCTAGCAATTTTCCAAACTTTCC
192 TATAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCATT-TAGCAATTTTCCAAACTTTCC
* *
418127 ATGCTCGAG-AATAGCATCATTTGGTCTAAA-A-ACTGTCATTTTGTAAACAACTTTTGGTCTTT
256 ATGCTCGAGAAATCGCATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTT
* * * * *
418189 GATTTAAAAACTTATTTACTTAAGAATTGTTTCTCTCTTGGTTCTAGGACAAACTTAC-AAACTA
321 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTAGGACAAACTT-CTGAACTT
* * **
418253 GTCAAAATTTTACAAGTTCTTTTATC-A-TT-T-TGGTTACTTAAAGTA
385 GTCAAACTTTTACGAGTTCTTTTA-CAACTTCTATTCTT-CTT--AGTA
* *
418298 TTC-A-A-GATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCACCATTT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTCAGAACATTCCATGCTCGAGAAATCGCATCATTT
* *
418360 GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCCTTGAATTAAAAACTTATTTACGTAA
66 GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
* * * * * * *
418425 GAATTGTTTCTCTCTTGGTCCTTGG-CTTAAAT---AGTTGTCAAACTTTTATGACTTCTTTTAC
131 GAATTGTTTCTCTCTTGGTTCTTGGTC-GAACTCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * * * * *
418486 AACTTCGATT-CTTCTAAGTATTCAAAATGATCCATTAATTTGAGCAATTTTTCAAACTTTTCAT
195 AACTTTGATTCCTT-AAAGTATTCAAGACGATCCATTCATTT-AGCAATTTTCCAAACTTTCCAT
* * *
418550 GCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTAGTCATTTTGTAAACAACTCTTGG-----G
258 GCTCGAGAAATCGCATCATTTGGTCTAAATAGATT-GTCATTTTGTAAACAACTTTTGGTCTTTG
* * * * *
418610 AGTTAAAAACTTA-TTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGTCGAACTT-TCGAACTTG
322 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTAGGACAAACTTCT-GAACTTG
** * * *
418673 GAAAACTTTTATGAGTTCTTTTATAACTT-TGGTTC--CTTAAAGTA
386 TCAAACTTTTACGAGTTCTTTTACAACTTCT-ATTCTTCTT--AGTA
* * * * * * *
418717 ATCAAGACGATCCATTCCTTCGGGCAA-TTTCTGAACATTCCAAGCT-GGGGAATCGTATCATTT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTCAGAACATTCCATGCTCGAGAAATCGCATCATTT
* * * * *
418780 GATCTAAATTGTTAGTCACTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTT-TTT---T--
66 GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
* * * *
418839 --A-CG----TCTCTT-GTTCTTGGACGAACTTTCGAACTTGTCAAA-ATTTACTG-GTTTTTTT
131 GAATTGTTTCTCTCTTGGTTCTTGGTCGAAC--TCGAACTTGTCAAACTTTTAC-GAG-TTCTTT
* * * * ** * ** *
418894 TATAAATTTGGTTCATTAAAGTATTCAAAACGATCTGTTTC-TTCGAGCAATTTTCTGAACATTC
192 TATAACTTTGATTCCTTAAAGTATTCAAGACGATC-CATTCATT-TAGCAATTTTCCAAACTTTC
* * *
418958 CATGCTCTG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AACAAATTTTCGTCT
255 CATGCTC-GAGAAATCGCATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCT
* * * * * * *
419021 TAT-ACTTAAAAACTTACTTACATTAGAATTGTTTCTCTCCT-GTTGTAACG-CAAACTT-TCGA
319 T-TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-AGGACAAACTTCT-GA
* * * * * *
419082 ACTTCTCACACTTTTTCGAGTTCTTTTATAACTT-TGATTCCTTC-AAGCA
381 ACTTGTCAAACTTTTACGAGTTCTTTTACAACTTCT-ATT-CTTCTTAGTA
* * ** * * * * * * * *
419131 TTTAAGATGAAACAATCCTTCAAGCAATTTTCTAG-ACTTTTCATGCACGAGAAATTGTATAATT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTC-AGAACATTCCATGCTCGAGAAATCGCATCATT
* * * *
419195 TGGTCTAAATAGTTTGCCATTTTGTAAACAACTTTTTGTCTTTAAATTAATAACTTATTTACGTG
65 TGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* ** *
419260 AGAA----TT-TCTCTTGGTTCTT-G--G-A-T-GAACTT-TCAAACTTGT-C-A-AACATTTAT
130 AGAATTGTTTCTCTCTTGGTTCTTGGTCGAACTCGAACTTGTCAAACTTTTACGAGTTCTTTTAT
* * * *** *
419310 GA----G-TT-C-T----T-TTCAAGACAATCCATTCATTTGACCAATTTTATGAACATTT-TAT
195 AACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCATTT-AGCAATTTTCCAAAC-TTTCCAT
** ** * * ** * *
419362 GCTCGAGAAATCAAATCATTAAGTCTAAATAGTTTTTCACCTTGTAAACAACATTTGGTTTTTGA
258 GCTCGAGAAATCGCATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGA
* * * * * *
419427 ATTAAAAACTTTTTTATGTGAGAATTGTTTCTCTCTT-GCTC-ATTGACCTAACTTCTTAACTTG
323 ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTA-GGA-CAAACTTCTGAACTTG
* * *
419490 TCAAACTTTTACGAGTTCTTTTATAACTTCAATTC--CTTAAAGTT
386 TCAAACTTTTACGAGTTCTTTTACAACTTCTATTCTTCTT--AGTA
* * * * * * *
419534 TTCAATATGATCTATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGTAATCTCATCATTT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTCAGAACATTCCATGCTCGAGAAATCGCATCATTT
** * * * *
419599 GGTCTAAATAGTTTACCA---TGTAAATAACATTTAGACTTTGAATTAAAAACTTATTTACGTGA
66 GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
* * * * * * *
419661 GAATTCTTTTTTTCTTGGTTCTAGGTCGAAAATCCGAACTTGTCAATCTTTTACGAGTTCCTTTA
131 GAATTGTTTCTCTCTTGGTTCTTGGTCG-AACT-CGAACTTGTCAAACTTTTACGAGTTCTTTTA
* * * * * * * * * *
419726 TTACTTCGATTCCTTAAAGTATTCAATAGGGTCCATTTATTCGAGCAGTTTT-TAGAACATTCCA
194 TAACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCATT-TAGCAATTTTCCA-AACTTTCCA
* * * *
419790 TGATCGAGAAATCGCATCATTTGGTCTAAATAG-TATGCCATTTTGTAACCAAATTTTGGT-TTG
257 TGCTCGAGAAATCGCATCATTTGGTCTAAATAGAT-TGTCATTTTGTAAACAACTTTTGGTCTT-
* * * * * * *
419853 TGAATCAAAAACTTATTAACGTGAGAATTG--TCTCTCTTGATCCTTGGCCTAAC-TC--AACTT
320 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTAGGACAAACTTCTGAACTT
*
419913 GTCAAACTTTTACGAGTTCTTTTACAACTTC-AGTTCTTCTAAGTA
385 GTCAAACTTTTACGAGTTCTTTTACAACTTCTA-TTCTTCTTAGTA
* * * * * * *
419958 TTCAAAACGATCCGTTCATTTGAGCAATTTTCATAACTTTCCATGCTCTG-GAAATCACATCATT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTCAGAACATTCCATGCTC-GAGAAATCGCATCATT
*
420022 TGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGATCTTTTGAATTAAAAACTTATTTACGT
65 TGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC-TTTGAATTAAAAACTTATTTACGT
* * * * * *
420087 GAGAATTTTTTTTCTCTTGGCTCTTGGAT-GAACTTCCGAACTTGCCAAACATTTAAGAGTTCTT
129 GAGAATTGTTTCTCTCTTGGTTCTTGG-TCGAAC-T-CGAACTTGTCAAACTTTTACGAGTTCTT
* * * * * * * **
420151 TTGTAACTTTGGA-TCCTGAGAGTACTCAAGACGATCCATTCCTTAATCCAATTTTCTGAACTTT
191 TTATAACTTT-GATTCCTTAAAGTATTCAAGACGATCCATTCATTTA-GCAATTTTCCAAACTTT
* * * * ** * * *
420215 CCATGCTCG-GGAATTGCATTATTTGGTCTAAAAACTTTGTCTTTTTGTGAACAACTTTTGGTCG
254 CCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCT
* * * * * *
420279 TCGAAGTAAAAACTTAATCACGTAAGAATTGTTTCTCTCTTGGTTCTAGGACGAACTT
319 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTAGGACAAACTT
420337 ACAAACTAGT
Statistics
Matches: 2298, Mismatches: 437, Indels: 315
0.75 0.14 0.10
Matches are distributed among these distances:
400 47 0.02
401 65 0.03
402 50 0.02
403 106 0.05
404 3 0.00
405 11 0.00
406 11 0.00
407 7 0.00
408 4 0.00
409 10 0.00
410 15 0.01
411 94 0.04
412 6 0.00
413 12 0.01
414 88 0.04
415 40 0.02
416 97 0.04
417 56 0.02
418 131 0.06
419 75 0.03
420 86 0.04
421 227 0.10
422 50 0.02
423 3 0.00
424 119 0.05
425 37 0.02
426 136 0.06
427 99 0.04
428 136 0.06
429 360 0.16
430 11 0.00
431 20 0.01
432 82 0.04
433 4 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (429 bp):
TTCAAGACGATCCATTCCTTCGAGCAATTTTCAGAACATTCCATGCTCGAGAAATCGCATCATTT
GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
GAATTGTTTCTCTCTTGGTTCTTGGTCGAACTCGAACTTGTCAAACTTTTACGAGTTCTTTTATA
ACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCATTTAGCAATTTTCCAAACTTTCCATGCT
CGAGAAATCGCATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTAGGACAAACTTCTGAACTTGTCAAA
CTTTTACGAGTTCTTTTACAACTTCTATTCTTCTTAGTA
Found at i:418946 original size:200 final size:201
Alignment explanation
Indices: 418641--419015 Score: 490
Period size: 200 Copynumber: 1.9 Consensus size: 201
418631 GAATTGTTTC
* * *
418641 TCTCTTGGTTCTTGGTCGAACTTTCGAACTTGGAAAACTTTTATGAGTTCTTTTATAACTTTGGT
1 TCTCTTGGTTCTTGGACGAACTTTCGAACTTGCAAAAC-TTTATGAGTTCTTTTATAAATTTGGT
* * * *
418706 TCCTTAAAGTAATCAAGACGATCCATTCCTTCGGGCAA-TTTCTGAACATTCCAAGCT-GGGGAA
65 TCATTAAAGTAATCAAAACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCAAGCTCGGGAAA
* * *
418769 TCGTATCATTTGATCTAAATTGTTAGTCACTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACT
130 TCGCATCATTTGATCTAAATAGTTAGTCACTTTGT-AACAAATTTTGGTTTTTGAATTAAAAACT
418834 TTTTTACG
194 TTTTTACG
*
418842 TCTCTT-GTTCTTGGACGAACTTTCGAACTTGTCAAAA-TTTACTG-GTTTTTTTTATAAATTTG
1 TCTCTTGGTTCTTGGACGAACTTTCGAACTTG-CAAAACTTTA-TGAG-TTCTTTTATAAATTTG
* ** * * *
418904 GTTCATTAAAGTATTCAAAACGATCTGTTTCTTCGAGCAATTTTCTGAACATTCCATGCTCTGGA
63 GTTCATTAAAGTAATCAAAACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCAAGCTCGGGA
* * *
418969 AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAACAAATTTT
128 AATCGCATCATTTGATCTAAATAGTTAGTCACTTTGTAACAAATTTT
419016 CGTCTTATAC
Statistics
Matches: 149, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
199 5 0.03
200 73 0.49
201 37 0.25
202 34 0.23
ACGTcount: A:0.26, C:0.17, G:0.15, T:0.42
Consensus pattern (201 bp):
TCTCTTGGTTCTTGGACGAACTTTCGAACTTGCAAAACTTTATGAGTTCTTTTATAAATTTGGTT
CATTAAAGTAATCAAAACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCAAGCTCGGGAAAT
CGCATCATTTGATCTAAATAGTTAGTCACTTTGTAACAAATTTTGGTTTTTGAATTAAAAACTTT
TTTACG
Found at i:421043 original size:25 final size:23
Alignment explanation
Indices: 420994--421043 Score: 57
Period size: 25 Copynumber: 2.1 Consensus size: 23
420984 TTAAAACAAC
*
420994 TTCTAAAAAAAACTTAAGAGCAA
1 TTCTAAAAAAAACTAAAGAGCAA
421017 TTCTAGAAGAAAAACTCAAAGAG-AA
1 TTCTA-AA-AAAAACT-AAAGAGCAA
421042 TT
1 TT
421044 ATTATTAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
23 5 0.22
24 2 0.09
25 11 0.48
26 5 0.22
ACGTcount: A:0.54, C:0.12, G:0.12, T:0.22
Consensus pattern (23 bp):
TTCTAAAAAAAACTAAAGAGCAA
Found at i:426799 original size:215 final size:213
Alignment explanation
Indices: 426344--428766 Score: 1599
Period size: 215 Copynumber: 11.4 Consensus size: 213
426334 ACTGTTTTGT
* * * * * * * * * *
426344 AACTTGCCAAACATTTAAGAATTCTTTTGTAACTTCGGATCCTGAGAGTATTCAAGTCGATCCAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * * * * **
426409 TCCTT-AATCCAATTTTCCAAACTTTTCATGCTCGGGAATTGCAT-ATTTTGGTCTAAA-A-ACT
66 TCCTTCGA-GCAATTTT-CGAACATTCCATGCTCGGAAATCGCATCA-TTTGGTCTAAATAGTTT
426470 GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACG-TAACAATTGTTTCTCT
128 GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTTAA-AATTGTTTCTCT
** * *
426534 CTTGGTTCTAAGACGAACTTAC-A
192 CTT-GTTCTTGGCCGAACTT-CTG
* * *
426557 AACTAGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGGCTATCCAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCAT
* *
426622 TCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCACCATTTGGTCTAAATAGTATG
66 TCCTTCGAGCAA-TTTTCGAACATTCCATGCTCG-GAAATCGCATCATTTGGTCTAAATAGTTTG
426687 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA-TTATTTACGTTAAAATTGTTTCTCTCT
129 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTTAAAATTGTTTCTCTCT
* *
426751 TGTTCCTTGGCCTAACTTCTT
194 TGTT-CTTGGCCGAACTTCTG
* * * * * *
426772 AACTTGTCAAACTTTTATGACTTCTTTTACAACTTTGATTCCTCT-AAGTATACAAAACGATCCA
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCT-TAAAGTATTCAAGACGATCCA
* * * * * * * * *
426836 TTCATTTGATCAATTTTAAGAGCTTTCAATGCTCGAGAAATCGTATCATTTGGTCTAACTAGTTT
65 TTCCTTCGAGCAATTTT-CGAACATTCCATGCTCG-GAAATCGCATCATTTGGTCTAAATAGTTT
* * * * *
426901 GTCATTTTGTAAACAAATTTTGGTCTTTGAATTAAAAACTTA-TTAAGTGAGAATTGTTTCCCTC
128 GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTTAAAATTGTTTCTCTC
426965 TTGGTTCTTGGCCGAACTT-TCG
193 TT-GTTCTTGGCCGAACTTCT-G
* *
426987 AACTTGGCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTAATCAAGACGATCCAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * *
427052 TCCTTCGAGCAATTTTC-ATACATTCCAAGCTTGGGAAATCGTATCATTTGGTCTAAATTGTTAG
66 TCCTTCGAGCAATTTTCGA-ACATTCCATGC-TCGGAAATCGCATCATTTGGTCTAAATAGTTTG
* * * *
427116 TCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTTTTTTACG-TAATAATTATTTTTCTC
129 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTTAA-AATTGTTTCTCTC
* *
427180 TTGTTCTTGGACGAACTTCCG
193 TTGTTCTTGGCCGAACTTCTG
* * * * ** *
427201 AACTTGTCAAA-ATTTACTAGTT-TTTTATAACTTAGGTTCATTAAAGTATTCAAGATTATCCGT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * * *
427264 TTCTTCGAGCAATTTTCTGAACATTCCTTGCTTTGTAAATCACATCATTCGGTCTAAATAGTTTG
66 TCCTTCGAGCAATTTTC-GAACATTCCATGC-TCGGAAATCGCATCATTTGGTCTAAATAGTTTG
* * * * *
427329 TCATTTTGTAAACAAATTTTAGTCTTAT-ACTTAAAAACTTAATTACGTTAGAATTGTTTCTCTC
129 TCATTTTGTAAACAACTTTTGGTCTT-TGAATTAAAAACTTATTTACGTTAAAATTGTTTCTCTC
* * *
427393 CTGTTGTT-GCACAAACTT-TCG
193 TTGTTCTTGGC-CGAACTTCT-G
* * * * * *
427414 AACTTCTCACACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATGATCTAG
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * *
427479 TCCTTCGAGCAATTTTCTAGACCTTTCATGCACGGCAAATCGCATAATTTGGTCTAAATAGTTTG
66 TCCTTCGAGCAATTTTCGA-ACATTCCATGCTCGG-AAATCGCATCATTTGGTCTAAATAGTTTG
* * * * * *
427544 TCATTTTGTAAACAACTTTTTGTCATTAAATTAATAACTTATTTACGTGAGAA---TTTCTCT-T
129 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTTAAAATTGTTTCTCTCT
* * *
427605 GGTTCTTGGACGAACTTTTG
194 TGTTCTTGGCCGAACTTCTG
* * *** * *
427625 AACTTGTCAAACATTTACGAATTCTTTTCA-AGA-TGATCCATTCCTTTGACCAA-T-TTTATGA
1 AACTTGTCAAACTTTTACGAGTTCTTTT-ATA-ACT--TTGGTTCC-TT-A--AAGTATTCAAG-
* * * * * * * **
427686 AC-ATTCCA-TGCTT-G-GGAA--ATCAAATCATT-GA-G-TC-TAAATAGTTTTTCACTTT-G-
57 ACGA-TCCATTCCTTCGAGCAATTTTCGAA-CATTCCATGCTCGGAAATCG--CATCA-TTTGGT
* * * ** * * *
427739 -TAAACAACTTTTGGTC--TTTGAATTAAA-TACTTTT--T-TACG-A--GAGAA-TTGTTT-C-
117 CTAAA-TA-GTTT-GTCATTTTG---TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * **
427791 TCT---CTTG---CTC-ATTGTCCTAACTT--CTTAAC-T-TG
176 T-TAAAATTGTTTCTCTCTTGT--T--CTTGGCCGAACTTCTG
* * * * * *
427823 ----T--CAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAATTTTTCAATATGATCTAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * *
427882 TCCTTCGAGCAATTTTCCGAACAATCCATGCTCGGGTAATCTCATCATTTGGTTTAAATAGTTTA
66 TCCTTCGAGCAATTTT-CGAACATTCCATGCTC-GGAAATCGCATCATTTGGTCTAAATAGTTTG
* * * * * * * *
427947 CCA---TGTAAATAACATTTGGACTTCGAATTAAAAACTTATTTACGTGAGAATTCTTTCTCTCT
129 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTTAAAATTGTTTCTCTCT
** ** ** *
428009 TAGTTCCAGGCTAAAAATCCG
194 T-GTTCTTGGCCGAACTTCTG
* * * * *
428030 -ACTTGTCAAACTTTTACGAGTTCTTTTATTACTTCGATTCCTTAAAGTATTCAATAGGATCCAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCAT
** * * * * * *
428094 TTATTCGAGCACTTTTCAGAACATTCCATGATTGAGAAACCGAATCATTTGGTCTAAATAGTATG
66 TCCTTCGAGCAATTTTC-GAACATTCCATGCTCG-GAAATCGCATCATTTGGTCTAAATAGTTTG
* *
428159 TCATTTTGTAAACAACTTTTGGTC--TGAGTTAAAAACTTATTTACGTGAAAATTGTTTCTCTCT
129 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTTAAAATTGTTTCTCTCT
* *
428222 TGGTCCTTGGCCTAAC-T-T-
194 T-GTTCTTGGCCGAACTTCTG
* *** * *
428240 AACTTGTCAAACTTTTACGAGTTCTTTTACAACTTCAATT-CTTCTAAGTATTCAAGAGGATCCA
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTT-AAAGTATTCAAGACGATCCA
* * * * * * * * * * *
428304 TTCATTTGAGCAATTTTCATAACTTTCCATGCTTGGGAAAACACATCATTTCGTCAAAACAGTAT
65 TTCCTTCGAGCAATTTTC-GAACATTCCATGC-TCGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * * * *
428369 GTCATTTTGTAAACCACTTTTGGGCTTTGAATTAAAAACTTGTTTACGTGAGAATTGTTTCTCCC
128 GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTTAAAATTGTTTCTCTC
* ** * *
428434 TTGGTCCTTCACCAAACTTCTT
193 TT-GTTCTTGGCCGAACTTCTG
* * * *
428456 AACTTTTCAAACTTTTATGAGTTCTTTTACAACTTCT-GTTCTTCTT--AGTATTCAAGACAATC
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-TGGTTC--CTTAAAGTATTCAAGACGATC
* * * * *
428518 CATTCCATT-AAGAAACTTTCCGAACATTCCATACACGAGAAATCGCATCATTTGGTCTAAATAG
63 CATTCC-TTCGAGCAA-TTTTCGAACATTCCATGCTCG-GAAATCGCATCATTTGGTCTAAATAG
* * ** * * * *
428582 TTTTTCATTATGTAAACAACTTTTGGTCTTCAAATTAAAAACTCATTTACGTGAGAATCGTTTCT
125 TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTTAAAATTGTTTCT
* *
428647 CTCTTGGTTCTTCGTCGAACTT-TGG
190 CTCTT-GTTCTTGGCCGAACTTCT-G
* * * * *
428672 ATCTTGTCAAACTTTTATGAGTTCTTTTATAACTTTGGTTCCATAAAATATTCAAGAAGATCCAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCAT
* *
428737 TCCGTCGAGCAATTTTTCGAATATTCCATG
66 TCCTTCGAGCAA-TTTTCGAACATTCCATG
428767 ATCTTGTCAA
Statistics
Matches: 1733, Mismatches: 343, Indels: 265
0.74 0.15 0.11
Matches are distributed among these distances:
186 2 0.00
187 5 0.00
188 9 0.01
189 3 0.00
190 13 0.01
191 7 0.00
192 25 0.01
193 6 0.00
194 9 0.01
195 10 0.01
196 1 0.00
197 10 0.01
198 13 0.01
199 2 0.00
200 6 0.00
201 1 0.00
202 10 0.01
203 4 0.00
205 9 0.01
206 12 0.01
207 9 0.01
208 7 0.00
209 13 0.01
210 10 0.01
211 172 0.10
212 168 0.10
213 294 0.17
214 154 0.09
215 450 0.26
216 288 0.17
217 8 0.00
219 3 0.00
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.40
Consensus pattern (213 bp):
AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCAT
TCCTTCGAGCAATTTTCGAACATTCCATGCTCGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTTAAAATTGTTTCTCTCTTG
TTCTTGGCCGAACTTCTG
Found at i:428246 original size:615 final size:618
Alignment explanation
Indices: 426469--431874 Score: 2611
Period size: 615 Copynumber: 8.7 Consensus size: 618
426459 GTCTAAAAAC
* *
426469 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTAACAATTGTTTCTCT
1 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTAAGAATTGTTTCTCT
* * * *
426534 CTTGGTTCTAAGACGAACTTAC-AAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTC
66 CTT-GTTCT-TGACGAACTT-CTTAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* *
426598 CTTAAAGTATTCAAGGCTATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATC
128 CTTAAAGTATTCAA-GATATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATC
* ** * *
426663 GCACCATTTGGTCTAAATAGTATGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA-TTA
192 GCATCATTTGGTCTAAATAGT-T-TCATCATGTAAACAACATTTGGTCTTCGAATTAAAAACTTA
* * * * ** *
426727 TTTACGTTAAAATTGTTTCTCTCTTGTTCCTTGGCCT-AACTTCTTAACTTGTCAAACTTTTATG
255 TTTACGTGAGAATTCTTTCTCTCTTGTTCC-AGG-CTAAACTTC-CGACTTGTCAAACTTTTACG
* * * * * *
426791 ACTTCTTTTACAACTTTGATTCCTCT-AAGTATACAAAACGATCCATTCATTTGATCAATTTTAA
317 AGTTCTTTTATAACTTTGATTCCT-TAAAGTATTCAAAACGATCCATTCATTCGAGCAATTTTCA
* * * * * * *
426855 GAGCTTTCAATGCTCGAGAAATCGTATCATTTGGTCTAACTAGTTTGTCATTTTGTAAACAAATT
381 GAACATTCCATGATCGAGAAATCGAATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* *
426920 TTGGTCTTTGAATTAAAAACTTA-TTAAGTGAGAATTGTTTCCCTCTTGGTTCTTGGCCGAACTT
446 TTGGTC-TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT
* *
426984 TCGAACTTGGCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTAATCAAGACGATC
510 T-GAACTTGTCAAACTTTTAC-AG--------TAA---T--TT-CTT--A-T--TCAAGATGATC
* * ** *
427049 CATTCCTTCGAGCAATTTTCAT-ACATTCCAAGCTTGGGAAATCGTATCATTTGGTCTAAATTGT
554 CATTCCTTTGAGCAATTTTCATAACATTCCATGCTTGGGAAATCAAATCA-TTGGTCTAAATAGT
427113 T
618 T
* * * * *
427114 AGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTTTTTTACGTAATAATTATTTTTCT
1 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTAAGAATTGTTTCTCT
** * * * *
427179 CTTGTTCTTGGACGAACTTCCGAACTTGTCAAA-ATTTACTAGTT-TTTTATAACTTAGGTTCAT
66 CTTGTTCTT-GACGAACTTCTTAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
* * * * * * *
427242 TAAAGTATTCAAGATTATCCGTTTCTTCGAGCAATTTTCTGAACATTCCTTGCTTTG-TAAATCA
130 TAAAGTATTCAAGA-TATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGC-TCGAGAAATCG
* ** * ** *
427306 CATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAA-ATTTTAGTCTTATACTTAAAAACTTA
193 CATCATTTGGTCTAAATAG-TT-TCATCATGTAAACAACA-TTTGGTCTTCGAATTAAAAACTTA
* * * * * * *
427370 ATTACGTTAGAATTGTTTCTCTCCTGTTGTTGCA--C-AAACTTTCGAACTTCTCACACTTTTAC
255 TTTACGTGAGAATTCTTTCTCT-C--TTGTTCCAGGCTAAACTTCCG-ACTTGTCAAACTTTTAC
* * * * *
427432 GAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATGATCTAGTCCTTCGAGCAATTTTCT
316 GAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAAACGATCCATTCATTCGAGCAATTTTC-
* * * *
427497 AG-ACCTTTCATGCA-CG-GCAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
380 AGAACATTCCATG-ATCGAG-AAATCGAATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * *
427559 CTTTTTGTCATTAAATTAATAACTTATTTACGTGAGAA----TT-TCTCTTGGTTCTTGGACGAA
443 CTTTTGGTC-TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAA
* *
427619 CTTTTGAACTTGTCAAACATTTAC-G-AA-TTCTT-TTCAAGATGATCCATTCCTTTGACCAATT
507 C-TTTGAACTTGTCAAACTTTTACAGTAATTTCTTATTCAAGATGATCCATTCCTTTGAGCAATT
427680 TT-ATGAACATTCCATGCTTGGGAAATCAAATCATTGAGTCTAAATAGTT
571 TTCAT-AACATTCCATGCTTGGGAAATCAAATCATTG-GTCTAAATAGTT
* * *
427729 TTTCACTTTGTAAACAACTTTTGGTCTTTGAATTAAATACTTTTTTACG-AGAGAATTGTTTCTC
1 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTA-AGAATTGTTTCTC
* * *
427793 TCTTGCTCATTGTCCTAACTTCTTAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
65 TCTTGTTC-TTG-ACGAACTTCTTAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * * * * * *
427858 CTTAAATTTTTCAATATGATCTATTCCTTCGAGCAATTTTCCGAACAATCCATGCTCGGGTAATC
128 CTTAAAGTATTCAAGAT-ATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATC
* * * * *
427923 TCATCATTTGGTTTAAATAGTTT-ACCATGTAAATAACATTTGGACTTCGAATTAAAAACTTATT
192 GCATCATTTGGTCTAAATAGTTTCATCATGTAAACAACATTTGGTCTTCGAATTAAAAACTTATT
**
427987 TACGTGAGAATTCTTTCTCTCTTAGTTCCAGGCTAAAAATCCGACTTGTCAAACTTTTACGAGTT
257 TACGTGAGAATTCTTTCTCTCTT-GTTCCAGGCTAAACTTCCGACTTGTCAAACTTTTACGAGTT
* * * * * *
428052 CTTTTATTACTTCGATTCCTTAAAGTATTCAATAGGATCCATTTATTCGAGCACTTTTCAGAACA
321 CTTTTATAACTTTGATTCCTTAAAGTATTCAAAACGATCCATTCATTCGAGCAATTTTCAGAACA
* * *
428117 TTCCATGATTGAGAAACCGAATCATTTGGTCTAAATAGTATGTCATTTTGTAAACAACTTTTGGT
386 TTCCATGATCGAGAAATCGAATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGT
* * * *
428182 C-TGAGTTAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTCCTTGGCCTAAC-TT-AACT
451 CTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTGAACT
* *
428244 TGTCAAACTTTTACGAGTTCTTTTACAACTTCAATTCTTCTAAGTATTCAAGAGGATCCATTCAT
516 TGTCAAACTTTTAC-AG-------------T-AA-T-TTCT---TATTCAAGATGATCCATTCCT
* * * * * * *
428309 TTGAGCAATTTTCATAACTTTCCATGCTTGGGAAAACACATCATTTCGTCAAAACAGTA
561 TTGAGCAATTTTCATAACATTCCATGCTTGGGAAATCAAATCA-TTGGTCTAAATAGTT
* * * * *
428368 TGTCATTTTGTAAACCACTTTTGGGCTTTGAATTAAAAACTTGTTTACGTGAGAATTGTTTCTCC
1 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTAAGAATTGTTTCTCT
* * * * * * *
428433 CTTGGTCCTTCACCAAACTTCTTAACTTTTCAAACTTTTATGAGTTCTTTTACAACTTCTGTTCT
66 CTT-GTTCTTGA-CGAACTTCTTAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC-
* * * * * *
428498 TCTT--AGTATTCAAGACAATCCATTCCATT-AAGAAACTTTCCGAACATTCCATACACGAGAAA
128 -CTTAAAGTATTCAAGA-TATCCATTCC-TTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAA
* * *
428560 TCGCATCATTTGGTCTAAATAGTTTTTCATTATGTAAACAACTTTTGGTCTTCAAATTAAAAACT
190 TCGCATCATTTGGTCTAAATAG--TTTCATCATGTAAACAACATTTGGTCTTCGAATTAAAAACT
* * * **
428625 CATTTACGTGAGAA-TCGTTTCTCTCTTGGTTCTTC-GTC-GAACTTTGGATCTTGTCAAACTTT
253 TATTTACGTGAGAATTC-TTTCTCTCTT-GTTC--CAGGCTAAACTTCCGA-CTTGTCAAACTTT
* * * * **
428687 TATGAGTTCTTTTATAACTTTGGTTCCATAAAATATTCAAGAA-GATCCATTCCGTCGAGCAATT
313 TACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAA-AACGATCCATTCATTCGAGCAA-T
* ** * * ** * * **
428751 TTTC-GAATATTCCATGATCTTG---TC-AAAC-TTT--TATGAGTTATTTTAACGTGAGAATTG
376 TTTCAGAACATTCCATGATCGAGAAATCGAATCATTTGGTCT-AAATAGTTT---GTCA-TTTTG
** * * * ** * * * * * *
428808 T-TTC-TCTCTAGGTTCTTGGCTGAAAATCTGAATTT--GTCA-AA--CTTT-T-AC--GAGTTC
436 TAAACAACTTTTGG-TCTTGAATTAAAAACT-TATTTACGTGAGAATTGTTTCTCTCTTG-GTTC
***** * * * * *
428862 TT-TTATTACTTTG---GT-TC---C--TTAAAGT-A-----TA--CAATATGATTCATGTAC-T
498 TTGGCCGAACTTTGAACTTGTCAAACTTTTACAGTAATTTCTTATTCAAGATGATCCAT-TCCTT
* * * * * *
428908 CGAGCAGTTTTCAAAACATTCCACGATCGGGAAA-C----C----G-C-----A---
562 TGAGCAATTTTCATAACATTCCATGCTTGGGAAATCAAATCATTGGTCTAAATAGTT
* *
428947 --TCATTTTGTAAACAACTTTTGGTCTGTGAATTAAAAACTTATTTACGTGAA-AATTGTTTCTC
1 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGT-AAGAATTGTTTCTC
* * * * *
429009 TCTTG-----GTC-AA---CTTAACTCT-TCAAACTTTTATGAGTTCTTTTACAACTTTGGTTCT
65 TCTTGTTCTTGACGAACTTCTTAACT-TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * * * * * *
429064 TTTAAGTATTCAAGACGATCCATTCATTTGAGCAATTTTCCTAACTTTCCATGC-CTGGGAAATC
129 TTAAAGTATTCAAGA-TATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTC-GAGAAATC
* * ** * *
429128 GTATCATTTGGTCTAAATAGAATGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
192 GCATCATTTGGTCTAAATAG--TTTCATCATGTAAACAACATTTGGTCTTCGAATTAAAAACTTA
* * * * * * ** *
429193 TTTACATGAGAATTGTTTCTCCCTTGGTCCTTGGCCAAACTTCTTAACTTGTCAAACTTTTACTA
255 TTTACGTGAGAATTCTTTCTCTCTTGTTCC-AGGCTAAACTTC-CGACTTGTCAAACTTTTACGA
* *
429258 G------T-T--C-----TT-CTT--AGTATTCAAGACGATCCATTCCTTCGAGCAACTTTTC-G
318 GTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAAACGATCCATTCATTCGAGCAA-TTTTCAG
* * *
429305 AACATTCCGTGCTTGAGAAATC-ACATCATTTGGTCTAAATAGTTT-TCATTTTGTAAACAACTT
382 AACATTCCATGATCGAGAAATCGA-ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * * * * *
429368 TTGGTTTTTGAATTAAAAACTCATTTACGTGAGAATCGTTTCTCTCTTGATTCTTCGTCGAACTT
446 TTGG-TCTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT
** * * * **
429433 CCAAAATTTTCAAACTTTTATAATTTCTTTTA-TAACTTTGGTTCCTTAAAATATTTAAGGCGAT
510 -TGAACTTGTCAAAC-TTT-T-A---C----AGTAA---T--TT-C-T----TATTCAAGATGAT
* * * ** *
429497 CCATTCCTTTGAACAAATTTTC-GAACATTTCATGCTTGGGAAATCGCATCATTTGGTCTAAATT
553 CCATTCCTTTGAGC-AATTTTCATAACATTCCATGCTTGGGAAATCAAATCA-TTGGTCTAAATA
429561 GTT
616 GTT
* * * * *
429564 AGTCATTTTGTAAACAACATTTGGTTTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCA
1 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTAAGAATTGTTTCTCT
* * * * * **
429629 CTTGTTCTTGGACGAACTT-TCAAACTTGCCAAACATTTAAGAGTTCTTTTGTAACTTCGAATCC
66 CTTGTTCTT-GACGAACTTCT-TAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * * ** * *
429693 TGAGAGTATTCAAGACAATCCATTCCTTCGTTCAATTTTCCAAACATTCCATGCT-G-GGAATCG
129 TTAAAGTATTCAAGA-TATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCG
* * * * * * *
429756 CATCATTTGGTTTAAAAACTTTGTCATCTTGTAAACAACTTTTGGTCTTCGAATTAAAAACTGAA
193 CATCATTTGGTCTAAATA-GTT-TCATCATGTAAACAACATTTGGTCTTCGAATTAAAAACTTAT
* ** * ** * *
429821 TTACGTAAGAATTGATTCTCTCTTGGTTCTAGG-TCAAACTTACAAACTAGTCAAACTTTTATGA
256 TTACGTGAGAATTCTTTCTCTCTT-GTTCCAGGCT-AAACTT-CCGACTTGTCAAACTTTTACGA
* *
429885 GTTCTTTTATAA-TTTGGTTCCTTTAAGTATTC--AA-GA--C--T-A-TC---C-A---T--G-
318 GTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAAACGATCCATTCATTCGAGCAATTTTCAGA
* * *
429930 ------C----TCGAGAAATCGCACCATTTGGTCTAAATAGTATGTCATTTTGTAAACAACTTTT
383 ACATTCCATGATCGAGAAATCGAATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * *
429985 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTCCTTAGACAAACTTCT
448 GGTC-TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT-T
* * * * *
430050 TAACTTGTAAAACTTTTACGAATTCTTTTACAACTTCAGTTCTTCTTAGTATTCAAGACGATCCG
511 GAACTTGT----C----A--AA--CTTTTAC-A-GT-A-AT-TTC-T--TATTCAAGATGATCCA
* * * * *
430115 TTTCTTCGAGCAACTTTT--TGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGT
556 TTCCTTTGAGCAA-TTTTCAT-AACATTCCATGCTTGGGAAATCAAATCA-TTGGTCTAAATAGT
430178 T
618 T
* * * ** * ** *
430179 TTTCATTTTATAAACAACTTTTGATCTTTGAATTAAAAACTCATTTACGTGAGAATCATTCCTCT
1 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTAAGAATTGTTTCTCT
* * * * * *
430244 CTTGGTTCTTTGCCGAACTTCTGAACTTGTCAAACTTATACAAGTTCTTTTTTAACTTTGGTTCC
66 CTT-GTTC-TTGACGAACTTCTTAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * * * * * *
430309 ATAAAATATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCA
129 TTAAAGTATTCAAGA-TATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCG
** * * *
430374 CATCATTTGGTC-AAATTA-TTAGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTTA
193 CATCATTTGGTCTAAA-TAGTT--TCATCATGTAAACAACATTTGGTCTTCGAATTAAAAACTTA
* * * ** * * * *
430437 TTTATGTAAGAATTGTTTCTC-CTTTGTTCTTGGATGAACTTCCGAACTTGTCAAAATTTTACTA
255 TTTACGTGAGAATTCTTTCTCTC-TTGTTCCAGGCTAAACTTCCG-ACTTGTCAAACTTTTACGA
* * * * *
430501 GTTCTTATATAAC-TTCAGTTCATTAAAGTATTCAAGACGATCCATTTC-TTCGAGCAATTTTCT
318 GTTCTTTTATAACTTTGA-TTCCTTAAAGTATTCAAAACGATCCA-TTCATTCGAGCAATTTTCA
* * * *
430564 GAATATTCCATGCTCTG-GAAATCGCATCATTTGGGCTAAATAGTTTGTCATTTTTTGTAAACAA
381 GAACATTCCATGATC-GAGAAATCGAATCATTTGGTCTAAATAGTTTGTCA--TTTTGTAAACAA
* * * * * * * * *
430628 ATTTTTGTCTTATAATTAAAAACTTATTTACATTAGAATTGTTTCTCTCCT-ATTGTT-GCACAA
443 CTTTTGGTCTT-GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGC-CGA
** *
430691 ACTTTCGAACTTCACACACTTTTACGAGTTCCTTTATAACTTCGATTCTTTAAAGTATTCAAGAT
506 ACTTT-GAACTTGTCAAACTTTTAC-AG--------TAA--T---TTC--T----TATTCAAGAT
* * * * ** * * * *
430756 GATCTAGTCCTTCGAGCAATTTTC-TAGACATTTCATGCACGAGAAATCACATAATTTGGTTTAA
550 GATCCATTCCTTTGAGCAATTTTCATA-ACATTCCATGCTTGGGAAATCAAATCA-TTGGTCTAA
430820 ATAGTT
613 ATAGTT
* * * * * * *
430826 TGCCATTTTGTAAACAACTTTTTGTCTTTAAATTAATAACTTATTTACATGAGAA---TTTCTCT
1 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTAAGAATTGTTTCTCT
* * *
430888 -TGGTTCTTGGACGAACTT-TTGAACTTGTCAAACATGTACGAG------T-T--CTT---TT-C
66 CTTGTTCTT-GACGAACTTCTT-AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * * * ** * *
430938 ---AAG-A--C--G--ATCAACTCCTTTGACCAATTTTATGAACATTCTATGCTCGAGAAATCAC
129 TTAAAGTATTCAAGATATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGC
* * * * * *
430993 ATCA-TTGAGTCTAAATAGTTTTTCA-CTTTGTAAACAACTTTTGGTTTTTGAATTAAATACTTT
194 ATCATTTG-GTCTAAATAG--TTTCATC-ATGTAAACAACATTTGGTCTTCGAATTAAAAACTTA
* ** * **
431056 TTTACGTGAGAATTGTTTCTCTCTTACTCCTTGGTCT-AACTTCTTAAC-TGTTCAAACTTTTAC
255 TTTACGTGAGAATTCTTTCTCTCTTGTTCC-AGG-CTAAACTTC-CGACTTG-TCAAACTTTTAC
* * * ** * * *
431119 GAGTTCTTTTATAAC-TTGGTTCCTTAAAGTTTTTAGTACGATCTATTCCTTCAAGCAATTTTTC
316 GAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAAACGATCCATTCATTCGAGCAA-TTTTC
* * * ** * *
431183 -GAACATTCCATGCTCGGGTAATCTCATCATTTGGTCTAAATTGTTTGTCATTTTGTAAATAACT
380 AGAACATTCCATGATCGAGAAATCGAATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * *
431247 TTTGGACTTTGAATTAAAAACTTATTTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGCCGAAAA
445 TTTGGTC-TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCG-AAC
** * * *
431312 TCCGAACTTGTCAAACTGTTACGAGTTCTTTTATTACTTCGGTTCCTTAAAGTATTCAATACGAT
508 TTTGAACTTGTCAAACTTTTAC-AG------TA--A--T---TT-C-T----TATTCAAGATGAT
** * * * * * * **
431377 CCATTTATTCGAGTAATTTTCAGAACACTCCATGATTGGAAAATCGCATCATTTGGTCTAAATAG
553 CCATTCCTTTGAGCAATTTTCATAACATTCCATGCTTGGGAAATCAAATCA-TTGGTCTAAATAG
*
431442 TA
617 TT
* * * *
431444 TGTCATTTTGTAAACAACTTTTGGTCTGTAAATTAAAATCTTATTTACGTGAA-AA-T-TTTCTC
1 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGT-AAGAATTGTTTCTC
* ** ** * *
431506 TCTTGGTTCTTGGCTGAAAATCCGAACTTGTCAAACTTTTACGAGTTCTTTTATTACTTTGGTTC
65 TCTT-GTTCTTGAC-GAACTTCTTAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * * * * ** * * *
431571 CTCAAAGTATTCAATACGATTCATTTAC-TCGAGCAATTTTCAAAACATTTCATGATCGGGAAAT
128 CTTAAAGTATTCAAGA-TATCCA-TTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAAT
* * ** * *
431635 TGCGTCATTTGGTCTAAATAGTATGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
191 CGCATCATTTGGTCTAAATAGT-T-TCATCATGTAAACAACATTTGGTCTTCGAATTAAAAACTT
* * * * ** ** *
431700 ATTGACGTGAGAATTGTTTCTCTCTTGGTCCTTGGCCGAACTTCTTAACTTGTCAAACTTTTATG
254 ATTTACGTGAGAATTCTTTCTCTCTTGTTCC-AGGCTAAACTTC-CGACTTGTCAAACTTTTACG
* * * * * * * * *
431765 GGTTCTTTTACAACTTAGGTT-CTTCTAAGTATTCAAGACGATCCATTCATTTGAGTAAGTTTCT
317 AGTTCTTTTATAACTTTGATTCCTT-AAAGTATTCAAAACGATCCATTCATTCGAGCAATTTTC-
* * * *** * *
431829 A-AACTTTCCATGCTCAAGAAATTTCATCTTTTGGTCTAAATTGTTT
380 AGAACATTCCATGATCGAGAAATCGAATCATTTGGTCTAAATAGTTT
431875 CTCTCTTGGT
Statistics
Matches: 3701, Mismatches: 685, Indels: 749
0.72 0.13 0.15
Matches are distributed among these distances:
548 1 0.00
549 43 0.01
550 4 0.00
551 9 0.00
552 22 0.01
553 5 0.00
554 5 0.00
555 6 0.00
556 5 0.00
557 2 0.00
558 1 0.00
559 6 0.00
560 7 0.00
563 1 0.00
564 3 0.00
565 10 0.00
566 185 0.05
567 3 0.00
568 1 0.00
569 2 0.00
570 1 0.00
571 1 0.00
572 1 0.00
573 1 0.00
576 1 0.00
577 58 0.02
578 1 0.00
579 1 0.00
580 2 0.00
582 1 0.00
587 1 0.00
588 1 0.00
593 1 0.00
596 2 0.00
597 3 0.00
598 66 0.02
599 8 0.00
600 2 0.00
603 1 0.00
608 1 0.00
609 1 0.00
610 1 0.00
612 3 0.00
613 30 0.01
614 66 0.02
615 490 0.13
616 170 0.05
617 153 0.04
618 318 0.09
619 214 0.06
620 52 0.01
621 37 0.01
622 1 0.00
623 2 0.00
624 1 0.00
625 10 0.00
626 14 0.00
627 109 0.03
628 9 0.00
629 77 0.02
630 7 0.00
631 3 0.00
632 3 0.00
633 11 0.00
634 11 0.00
635 15 0.00
636 6 0.00
637 12 0.00
638 42 0.01
639 246 0.07
640 23 0.01
641 32 0.01
642 358 0.10
643 136 0.04
644 43 0.01
645 217 0.06
646 119 0.03
647 130 0.04
648 54 0.01
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (618 bp):
TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTAAGAATTGTTTCTCT
CTTGTTCTTGACGAACTTCTTAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
AAAGTATTCAAGATATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCAT
CATTTGGTCTAAATAGTTTCATCATGTAAACAACATTTGGTCTTCGAATTAAAAACTTATTTACG
TGAGAATTCTTTCTCTCTTGTTCCAGGCTAAACTTCCGACTTGTCAAACTTTTACGAGTTCTTTT
ATAACTTTGATTCCTTAAAGTATTCAAAACGATCCATTCATTCGAGCAATTTTCAGAACATTCCA
TGATCGAGAAATCGAATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTGA
ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTGAACTTGTCA
AACTTTTACAGTAATTTCTTATTCAAGATGATCCATTCCTTTGAGCAATTTTCATAACATTCCAT
GCTTGGGAAATCAAATCATTGGTCTAAATAGTT
Found at i:428508 original size:216 final size:214
Alignment explanation
Indices: 427651--428766 Score: 972
Period size: 216 Copynumber: 5.2 Consensus size: 214
427641 ACGAATTCTT
* * * *
427651 TTCAAGATGATCCATTCCTTTGACCAATTTT-ATGAACATTCCATGCTTGGGAAATCAAATCA-T
1 TTCAAGAGGATCCATTCATTTGAGCAATTTTCA-GAACATTCCATGCTTGGGAAATCACATCATT
* * * * * * *
427714 TGAGTCTAAATAGTTTTTCACTTTGTAAACAACTTTTGGTCTTTGAATTAAATACTTTTTTACGA
65 TG-GTCTAAATAGTATGTCATTTTGTAAACAACTTTTGGGCTTTGAATTAAAAACTTATTTACGT
* * ** *
427779 GAGAATTGTTTCTCTCTTGCTCATTGTCCTAACTTCTTAACTTGTCAAACTTTTACGAGTTCTTT
129 GAGAATTGTTTCTCTCTTGGTCCTTCACCAAACTTCTTAACTTGTCAAACTTTTACGAGTTCTTT
* *
427844 TATAACTTCGGTTCCTTAAATTT
194 TATAACTTC-GTTCCTT-AAGTA
* * * * * * * * * *
427867 TTCAATATGATCTATTCCTTCGAGCAATTTTCCGAACAATCCATGCTCGGGTAATCTCATCATTT
1 TTCAAGAGGATCCATTCATTTGAGCAATTTTCAGAACATTCCATGCTTGGGAAATCACATCATTT
* *** * * * *
427932 GGTTTAAATAGT-T-T-ACCATGTAAATAACATTTGGACTTCGAATTAAAAACTTATTTACGTGA
66 GGTCTAAATAGTATGTCATTTTGTAAACAACTTTTGGGCTTTGAATTAAAAACTTATTTACGTGA
* * * * ** **
427994 GAATTCTTTCTCTCTTAGT--TCCAGGCTAAAAATC-CGACTTGTCAAACTTTTACGAGTTCTTT
131 GAATTGTTTCTCTCTTGGTCCTTCA--CCAAACTTCTTAACTTGTCAAACTTTTACGAGTTCTTT
*
428056 TATTACTTCGATTCCTTAAAGTA
194 TATAACTTCG-TTCCTT-AAGTA
* * * * * * *
428079 TTCAATAGGATCCATTTATTCGAGCACTTTTCAGAACATTCCATGATTGAGAAACCGA-ATCATT
1 TTCAAGAGGATCCATTCATTTGAGCAATTTTCAGAACATTCCATGCTTGGGAAATC-ACATCATT
* *
428143 TGGTCTAAATAGTATGTCATTTTGTAAACAACTTTT-GG-TCTGAGTTAAAAACTTATTTACGTG
65 TGGTCTAAATAGTATGTCATTTTGTAAACAACTTTTGGGCTTTGAATTAAAAACTTATTTACGTG
* ** *
428206 AAAATTGTTTCTCTCTTGGTCCTTGGCCTAA---CTTAACTTGTCAAACTTTTACGAGTTCTTTT
130 AGAATTGTTTCTCTCTTGGTCCTTCACCAAACTTCTTAACTTGTCAAACTTTTACGAGTTCTTTT
* * *
428268 ACAACTTCAATTCTTCTAAGTA
195 ATAACTTC-GTTCCT-TAAGTA
* * *
428290 TTCAAGAGGATCCATTCATTTGAGCAATTTTCATAACTTTCCATGCTTGGGAAAACACATCATTT
1 TTCAAGAGGATCCATTCATTTGAGCAATTTTCAGAACATTCCATGCTTGGGAAATCACATCATTT
* * * * *
428355 CGTCAAAACAGTATGTCATTTTGTAAACCACTTTTGGGCTTTGAATTAAAAACTTGTTTACGTGA
66 GGTCTAAATAGTATGTCATTTTGTAAACAACTTTTGGGCTTTGAATTAAAAACTTATTTACGTGA
* * *
428420 GAATTGTTTCTCCCTTGGTCCTTCACCAAACTTCTTAACTTTTCAAACTTTTATGAGTTCTTTTA
131 GAATTGTTTCTCTCTTGGTCCTTCACCAAACTTCTTAACTTGTCAAACTTTTACGAGTTCTTTTA
*
428485 CAACTTCTGTTCTTCTT-AGTA
196 TAACTTC-GTTC--CTTAAGTA
** * * * * * ** * *
428506 TTCAAGACAATCCATTCCA-TTAAGAAACTTTCCGAACATTCCATACACGAGAAATCGCATCATT
1 TTCAAGAGGATCCATT-CATTTGAGCAATTTTCAGAACATTCCATGCTTGGGAAATCACATCATT
* * * * ** *
428570 TGGTCTAAATAGTTTTTCATTATGTAAACAACTTTTGGTCTTCAAATTAAAAACTCATTTACGTG
65 TGGTCTAAATAGTATGTCATTTTGTAAACAACTTTTGGGCTTTGAATTAAAAACTTATTTACGTG
* * ** * * * *
428635 AGAATCGTTTCTCTCTTGGTTCTTCGTCGAACTT-TGGATCTTGTCAAACTTTTATGAGTTCTTT
130 AGAATTGTTTCTCTCTTGGTCCTTCACCAAACTTCT-TAACTTGTCAAACTTTTACGAGTTCTTT
* * *
428699 TATAACTTTGGTTCCATAAAATA
194 TATAAC-TTCGTTCC-TTAAGTA
* ** * *
428722 TTCAAGAAGATCCATTCCGTCGAGCAATTTTTC-GAATATTCCATG
1 TTCAAGAGGATCCATTCATTTGAGCAA-TTTTCAGAACATTCCATG
428767 ATCTTGTCAA
Statistics
Matches: 725, Mismatches: 146, Indels: 58
0.78 0.16 0.06
Matches are distributed among these distances:
210 2 0.00
211 129 0.18
212 109 0.15
213 151 0.21
214 4 0.01
215 18 0.02
216 299 0.41
217 12 0.02
218 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.40
Consensus pattern (214 bp):
TTCAAGAGGATCCATTCATTTGAGCAATTTTCAGAACATTCCATGCTTGGGAAATCACATCATTT
GGTCTAAATAGTATGTCATTTTGTAAACAACTTTTGGGCTTTGAATTAAAAACTTATTTACGTGA
GAATTGTTTCTCTCTTGGTCCTTCACCAAACTTCTTAACTTGTCAAACTTTTACGAGTTCTTTTA
TAACTTCGTTCCTTAAGTA
Found at i:429647 original size:215 final size:214
Alignment explanation
Indices: 429269--431812 Score: 1302
Period size: 216 Copynumber: 12.1 Consensus size: 214
429259 TTCTTCTTAG
* * * * *
429269 TATTCAAGACGATCCATTCCTTCGAGCAACTTTTCGAACATTCCGTGCTTGAGAAATCACATCAT
1 TATTCAAGACGATCCATTCCTTCGAACAAATTTTCGAACATTCCATGCTTGGGAAATCGCATCAT
* *
429334 TTGGTCTAAATAGTTTTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTCATTTACGTG
66 TTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTCATTTACGTA
* * * * * *
429399 AGAATCGTTTCTCTCTTGATTCTTCGTCGAACTTCCAAAATTTTCAAACTTTTATAATTTCTTTT
131 AGAATTGTTTCTCTCTTG-TTCTTGGTCGAACTTACAAACTTGTCAAACTTTTATAAGTTCTTTT
429464 ATAACTTTGGTTCCTTAAAA
195 ATAACTTTGGTTCCTTAAAA
* * * *
429484 TATTTAAGGCGATCCATTCCTTTGAACAAATTTTCGAACATTTCATGCTTGGGAAATCGCATCAT
1 TATTCAAGACGATCCATTCCTTCGAACAAATTTTCGAACATTCCATGCTTGGGAAATCGCATCAT
* * *
429549 TTGGTCTAAATTGTTAGTCATTTTGTAAACAACATTTGGTTTTTGAATTAAAAACTTATTTACGT
66 TTGGTCTAAATAGTT-GTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTCATTTACGT
* * * * *
429614 AAGAATTGTTTCTCACTTGTTCTTGGACGAACTTTCAAACTTGCCAAACATTTA-AGAGTTCTTT
130 AAGAATTGTTTCTCTCTTGTTCTTGGTCGAACTTACAAACTTGTCAAACTTTTATA-AGTTCTTT
* * ** * * *
429678 TGTAACTTCGAATCCTGAGAG
194 TATAACTTTGGTTCCTTAAAA
* ** *
429699 TATTCAAGACAATCCATTCCTTCGTTC-AATTTTCCAAACATTCCATGC-TGGG-AATCGCATCA
1 TATTCAAGACGATCCATTCCTTCGAACAAATTTT-CGAACATTCCATGCTTGGGAAATCGCATCA
* * * * * * * *
429761 TTTGGTTTAAAAACTTTGTCATCTTGTAAACAACTTTTGGTCTTCGAATTAAAAACTGAATTACG
65 TTTGGTCTAAATA-GTTGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTCATTTACG
* * * * *
429826 TAAGAATTGATTCTCTCTTGGTTCTAGGTCAAACTTACAAACTAGTCAAACTTTTATGAGTTCTT
129 TAAGAATTGTTTCTCTCTT-GTTCTTGGTCGAACTTACAAACTTGTCAAACTTTTATAAGTTCTT
* *
429891 TTATAA-TTTGGTTCCTTTAAG
193 TTATAACTTTGGTTCCTTAAAA
* * * * *
429912 TATTCAAGACTATCCA-TGC-TCG-AGAAA---TCG--CA--CCAT--TTGGTCTAAATAG--T-
1 TATTCAAGACGATCCATTCCTTCGAACAAATTTTCGAACATTCCATGCTTGG--GAAATCGCATC
* *
429962 A--T-GTC-----A-TT-T--T---GTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACG
64 ATTTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTCATTTACG
* * * * * * * *
430012 TGAGAATTGTTTCTCTCTTGGTCCTTAGACAAACTT-CTTAACTTGTAAAACTTTTACGAA-TTC
129 TAAGAATTGTTTCTCTCTT-GTTCTTGGTCGAACTTAC-AAACTTGTCAAACTTTTA-TAAGTTC
* ** *
430075 TTTTACAACTTCAGTTCTTCTT--AG
191 TTTTATAACTTTGGTTC--CTTAAAA
* * * * * * * *
430099 TATTCAAGACGATCCGTTTCTTCGAGCAACTTTTTGAACATTCCATGCTCGAGAAATCACATCAT
1 TATTCAAGACGATCCATTCCTTCGAACAAATTTTCGAACATTCCATGCTTGGGAAATCGCATCAT
* * * *
430164 TTGGTCTAAATAGTTTTTCATTTTATAAACAACTTTTGATCTTTGAATTAAAAACTCATTTACGT
66 TTGGTCTAAATAG-TTGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTCATTTACGT
* ** * * * * * *
430229 GAGAATCATTCCTCTCTTGGTTCTTTGCCGAACTT-CTGAACTTGTCAAACTTATACAAGTTCTT
130 AAGAATTGTTTCTCTCTT-GTTCTTGGTCGAACTTAC-AAACTTGTCAAACTTTTATAAGTTCTT
* *
430293 TTTTAACTTTGGTTCCATAAAA
193 TTATAACTTTGGTTCCTTAAAA
* * *
430315 TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCACATCAT
1 TATTCAAGACGATCCATTCCTTCGAACAAATTTTCGAACATTCCATGCTTGGGAAATCGCATCAT
* *
430380 TTGGTC-AAATTA-TTAGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTTATTTATG
66 TTGGTCTAAA-TAGTT-GTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTCATTTACG
* * *
430443 TAAGAATTGTTTCTC-CTTTGTTCTTGGAT-GAACTTCCGAACTTGTCAAAATTTTACT-AGTTC
129 TAAGAATTGTTTCTCTC-TTGTTCTTGG-TCGAACTTACAAACTTGTCAAACTTTTA-TAAGTTC
* ** * *
430505 TTATATAACTTCAGTTCATTAAAG
191 TTTTATAACTTTGGTTCCTTAAAA
* * *
430529 TATTCAAGACGATCCATTTCTTCGAGC-AATTTTCTGAATATTCCATGCTCT-GGAAATCGCATC
1 TATTCAAGACGATCCATTCCTTCGAACAAATTTTC-GAACATTCCATGCT-TGGGAAATCGCATC
* * * * *
430592 ATTTGGGCTAAATAGTTTGTCATTTTTTGTAAACAAATTTTTGTCTTAT-AATTAAAAACTTATT
64 ATTTGGTCTAAATAG-TTGTCA--TTTTGTAAACAACTTTTGGT-TTTTGAATTAAAAACTCATT
* * * * * ** * * * ** * **
430656 TACATTAGAATTGTTTCTCTCCTATTGTTGCACAAACTTTCGAACTTCACACACTTTTACGAGTT
125 TACGTAAGAATTGTTTCTCTCTTGTTCTTGGTCGAACTTACAAACTTGTCAAACTTTTATAAGTT
* * * * *
430721 CCTTTATAACTTCGATTCTTTAAAG
190 CTTTTATAACTTTGGTTCCTTAAAA
* * * * * * ** * * *
430746 TATTCAAGATGATCTAGTCCTTCGAGC-AATTTTCTAGACATTTCATGCACGAGAAATCACATAA
1 TATTCAAGACGATCCATTCCTTCGAACAAATTTTCGA-ACATTCCATGCTTGGGAAATCGCATCA
* * * * * * * *
430810 TTTGGTTTAAATAGTTTGCCATTTTGTAAACAACTTTTTGTCTTTAAATTAATAACTTATTTACA
65 TTTGGTCTAAATAG-TTGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTCATTTACG
* * * *** * * **
430875 TGAGAA---TTTCTCT-TGGTTCTTGGACGAACTTTTGAACTTGTCAAACATGTACGAGTTCTTT
129 TAAGAATTGTTTCTCTCTTGTTCTTGGTCGAACTTACAAACTTGTCAAACTTTTATAAGTTCTTT
* **** *
430936 TCA-AGACGATCAACTCCTTTGACCAA
194 T-ATA-AC-TTTGGTTCC-TT-A-AAA
* * * * * ** ** * *
430962 T-TTTATGAAC-ATTC-TATGC-TCG-AGAAA---TC--ACA-T-CATTGAGT-CTAAATAGTTT
1 TATTCAAG-ACGATCCAT-TCCTTCGAACAAATTTTCGAACATTCCA-TGCTTGGGAAATCG--C
* ** * ** * ** ** * * *
431014 TTCACTTT-GTAAACAACT-TTTGGT--TTTTG-AATTAAATACT--TTTTT-ACGTGAGAA-TT
61 ATCA-TTTGGTCTA-AA-TAGTT-GTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTC
* * * * * *** * *
431070 GTTT-C-T-----CTCTTACTC-CTTGGTCTAACTTCTTAACTGTTCAAAC---T-----TT-TA
122 ATTTACGTAAGAATTGTTTCTCTCTTGTTCT-TGGTC-GAACT-TACAAACTTGTCAAACTTTTA
** *
431118 CGAGTTCTTTTATAAC-TTGGTTCCTTAAAG
184 TAAGTTCTTTTATAACTTTGGTTCCTTAAAA
** * * * * *
431148 T-TTTTAGTACGATCTATTCCTTC-AAGCAATTTTTCGAACATTCCATGCTCGGGTAATCTCATC
1 TATTCAAG-ACGATCCATTCCTTCGAA-CAAATTTTCGAACATTCCATGCTTGGGAAATCGCATC
* * ** *
431211 ATTTGGTCTAAATTGTTTGTCATTTTGTAAATAACTTTTGGACTTTGAATTAAAAACTTATTTAC
64 ATTTGGTCTAAATAG-TTGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTCATTTAC
* * * ** * * * **
431276 GTGAGAATTTTTTCTCTCTTGGTTCTTGGCCGAAAATCCGAACTTGTCAAACTGTTACGAGTTCT
128 GTAAGAATTGTTTCTCTCTT-GTTCTTGGTCGAACTTACAAACTTGTCAAACTTTTATAAGTTCT
* * *
431341 TTTATTACTTCGGTTCCTTAAAG
192 TTTATAACTTTGGTTCCTTAAAA
* ** ** * * *
431364 TATTCAATACGATCCATTTATTCG-AGTAATTTTCAGAACACTCCATGATTGGAAAATCGCATCA
1 TATTCAAGACGATCCATTCCTTCGAACAAATTTTC-GAACATTCCATGCTTGGGAAATCGCATCA
* * * * *
431428 TTTGGTCTAAATAGTATGTCATTTTGTAAACAACTTTTGGTCTGTAAATTAAAATCTTATTTACG
65 TTTGGTCTAAATAGT-TGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTCATTTACG
** * * **
431493 TGAA-AA-T-TTTCTCTCTTGGTTCTTGG-CTGAAAATCCGAACTTGTCAAACTTTTACGAGTTC
129 T-AAGAATTGTTTCTCTCTT-GTTCTTGGTC-GAACTTACAAACTTGTCAAACTTTTATAAGTTC
* * *
431554 TTTTATTACTTTGGTTCCTCAAAG
191 TTTTATAACTTTGGTTCCTTAAAA
* * * * * * * * * *
431578 TATTCAATACGATTCATTTAC-TCGAGC-AATTTTCAAAACATTTCATGATCGGGAAATTGCGTC
1 TATTCAAGACGATCCA-TTCCTTCGAACAAATTTTC-GAACATTCCATGCTTGGGAAATCGCATC
* * *
431641 ATTTGGTCTAAATAGTATGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTGAC
64 ATTTGGTCTAAATAGT-TGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTCATTTAC
* * * * **
431706 GTGAGAATTGTTTCTCTCTTGGTCCTTGGCCGAACTT-CTTAACTTGTCAAACTTTTATGGGTTC
128 GTAAGAATTGTTTCTCTCTT-GTTCTTGGTCGAACTTAC-AAACTTGTCAAACTTTTATAAGTTC
* * * *
431770 TTTTACAACTTAGGTT-CTTCTAAG
191 TTTTATAACTTTGGTTCCTT-AAAA
431794 TATTCAAGACGATCCATTC
1 TATTCAAGACGATCCATTC
431813 ATTTGAGTAA
Statistics
Matches: 1806, Mismatches: 373, Indels: 300
0.73 0.15 0.12
Matches are distributed among these distances:
185 1 0.00
186 100 0.06
187 28 0.02
188 8 0.00
189 13 0.01
190 2 0.00
191 4 0.00
192 19 0.01
193 10 0.01
194 12 0.01
195 10 0.01
196 12 0.01
197 8 0.00
198 14 0.01
199 11 0.01
200 12 0.01
201 7 0.00
202 11 0.01
203 13 0.01
204 4 0.00
205 6 0.00
206 17 0.01
207 17 0.01
208 16 0.01
209 11 0.01
210 3 0.00
211 45 0.02
212 12 0.01
213 117 0.06
214 364 0.20
215 305 0.17
216 419 0.23
217 171 0.09
218 4 0.00
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (214 bp):
TATTCAAGACGATCCATTCCTTCGAACAAATTTTCGAACATTCCATGCTTGGGAAATCGCATCAT
TTGGTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTCATTTACGTA
AGAATTGTTTCTCTCTTGTTCTTGGTCGAACTTACAAACTTGTCAAACTTTTATAAGTTCTTTTA
TAACTTTGGTTCCTTAAAA
Found at i:429815 original size:213 final size:213
Alignment explanation
Indices: 429267--429928 Score: 738
Period size: 215 Copynumber: 3.1 Consensus size: 213
429257 AGTTCTTCTT
* * * *
429267 AGTATTCAAGACGATCCATTCCTTCGAGCAACTTTTCGAACATTCCGTGCTTGAGAAATCACATC
1 AGTATTCAAGACGATCCATTCCTTCGAACAA-TTTTCGAACATTCCATGCTTG-GGAATCGCATC
429332 ATTTGGTCTAAATAGTTT-TCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTCATTTAC
64 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTCATTTAC
* * * * * * *
429396 GTGAGAATCGTTTCTCTCTTGATTCTTCGTCGAACTTCCAAAATTTTCAAACTTTTATA-ATTTC
129 GTAAGAATTGTTTCTCTCTTG-TTCTTGGTCGAACTTACAAACTTGTCAAACTTTTA-AGAGTTC
* ** *
429460 TTTTATAACTTTGGTTCCTTAA
192 TTTTATAACTTCGAATCCTGAA
* * * * *
429482 AATATTTAAGGCGATCCATTCCTTTGAACAAATTTTCGAACATTTCATGCTTGGGAAATCGCATC
1 AGTATTCAAGACGATCCATTCCTTCGAAC-AATTTTCGAACATTCCATGCTTGGG-AATCGCATC
* * * *
429547 ATTTGGTCTAAATTGTTAGTCATTTTGTAAACAACATTTGGTTTTTGAATTAAAAACTTATTTAC
64 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTCATTTAC
* * * * *
429612 GTAAGAATTGTTTCTCACTTGTTCTTGGACGAACTTTCAAACTTGCCAAACATTTAAGAGTTCTT
129 GTAAGAATTGTTTCTCTCTTGTTCTTGGTCGAACTTACAAACTTGTCAAACTTTTAAGAGTTCTT
* *
429677 TTGTAACTTCGAATCCTGAG
194 TTATAACTTCGAATCCTGAA
* ** *
429697 AGTATTCAAGACAATCCATTCCTTCGTTCAATTTTCCAAACATTCCATGC-TGGGAATCGCATCA
1 AGTATTCAAGACGATCCATTCCTTCGAACAATTTT-CGAACATTCCATGCTTGGGAATCGCATCA
* * * * * * * *
429761 TTTGGTTTAAAAACTTTGTCATCTTGTAAACAACTTTTGGTCTTCGAATTAAAAACTGAATTACG
65 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTCATTTACG
* * * * *
429826 TAAGAATTGATTCTCTCTTGGTTCTAGGTCAAACTTACAAACTAGTCAAACTTTTATGAGTTCTT
130 TAAGAATTGTTTCTCTCTT-GTTCTTGGTCGAACTTACAAACTTGTCAAACTTTTAAGAGTTCTT
* ** **
429891 TTATAA-TTTGGTTCCTTTA
194 TTATAACTTCGAATCCTGAA
*
429910 AGTATTCAAGACTATCCAT
1 AGTATTCAAGACGATCCAT
429929 GCTCGAGAAA
Statistics
Matches: 373, Mismatches: 68, Indels: 14
0.82 0.15 0.03
Matches are distributed among these distances:
213 106 0.28
214 54 0.14
215 149 0.40
216 64 0.17
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (213 bp):
AGTATTCAAGACGATCCATTCCTTCGAACAATTTTCGAACATTCCATGCTTGGGAATCGCATCAT
TTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTCATTTACGT
AAGAATTGTTTCTCTCTTGTTCTTGGTCGAACTTACAAACTTGTCAAACTTTTAAGAGTTCTTTT
ATAACTTCGAATCCTGAA
Found at i:431797 original size:430 final size:431
Alignment explanation
Indices: 430986--431827 Score: 1067
Period size: 430 Copynumber: 2.0 Consensus size: 431
430976 TATGCTCGAG
* * * * *
430986 AAATCACATCATTGAGTCTAAATAGTTTTTCACTTTGTAAACAACTTTTGGTTTTTGAATTAAAT
1 AAATCACATCATTGAGTCTAAATAGTATGTCACTTTGTAAACAACTTTTGGTCTGTAAATTAAAT
* * ** **
431051 ACTTTTTTACGTGAGAATTGTTTCTCTCTTACTCCTTGGTCTAACTTCTTAACTGTTCAAACTTT
66 ACTTATTTACGTGAGAAATGTTTCTCTCTTACTCCTTGGTCTAAAATCCGAACTGTTCAAACTTT
* * * * *
431116 TACGAGTTCTTTTATAACTTGGTTCCTTAAAGTTTTTAGTACGATCTATTCCTTCAAGCAATTTT
131 TACGAGTTCTTTTATAACTTGGTTCCTCAAAGTATTCAATACGATCTATTACTTCAAGCAATTTT
* * * * * *
431181 TCGAACATTCCATGCTCGGGTAATCTCATCATTTGGTCTAAATTGTTTGTCATTTTGTAAATAAC
196 TCAAACATTCCATGATCGGGAAATCTCATCATTTGGTCTAAATAGTATGTCATTTTGTAAACAAC
* * *
431246 TTTTGGACTTTGAATTAAAAACTTATTTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGCCGAAA
261 TTTTGGACTTTGAATTAAAAACTTATTGACGTGAGAATTGTTTCTCTCTTGGTCCTTGGCCGAAA
** * *
431311 ATCCGAACTTGTCAAACTGTTACGAGTTCTTTTATTACTTCGGTTCCTTAAAGTATTCAATACGA
326 ATCCGAACTTGTCAAACTGTTACGAGTTCTTTTACAACTTAGGTTCCTTAAAGTATTCAAGACGA
* *
431376 TCCATTTATTCGAGTAATTTTCAGAACACTCCATGATTGGA
391 TCCATTCATTCGAGTAAGTTTCAGAACACTCCATGATTGGA
* *
431417 AAATCGCATCATTTG-GTCTAAATAGTATGTCATTTTGTAAACAACTTTTGGTCTGTAAATTAAA
1 AAATCACATCA-TTGAGTCTAAATAGTATGTCACTTTGTAAACAACTTTTGGTCTGTAAATTAAA
** *
431481 -ATCTTATTTACGTGA-AAAT-TTTCTCTCTTGGTTCTTGG-CTGAAAATCCGAACT-TGTCAAA
65 TA-CTTATTTACGTGAGAAATGTTTCTCTCTTACTCCTTGGTCT-AAAATCCGAACTGT-TCAAA
* *
431541 CTTTTACGAGTTCTTTTATTACTTTGGTTCCTCAAAGTATTCAATACGAT-TCATTTAC-TCGAG
127 CTTTTACGAGTTCTTTTATAAC-TTGGTTCCTCAAAGTATTCAATACGATCT-A-TTACTTCAAG
* *
431604 CAA-TTTTCAAAACATTTCATGATCGGGAAAT-TGCGTCATTTGGTCTAAATAGTATGTCATTTT
189 CAATTTTTC-AAACATTCCATGATCGGGAAATCT-CATCATTTGGTCTAAATAGTATGTCATTTT
*
431667 GTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTGACGTGAGAATTGTTTCTCTCTTGGTCCT
252 GTAAACAACTTTTGGACTTTGAATTAAAAACTTATTGACGTGAGAATTGTTTCTCTCTTGGTCCT
** ** * * * *
431732 TGGCCGAACTTCTTAACTTGTCAAACTTTTATGGGTTCTTTTACAACTTAGGTT-CTTCTAAGTA
317 TGGCCGAAAATCCGAACTTGTCAAACTGTTACGAGTTCTTTTACAACTTAGGTTCCTT-AAAGTA
*
431796 TTCAAGACGATCCATTCATTTGAGTAAGTTTC
381 TTCAAGACGATCCATTCATTCGAGTAAGTTTC
431828 TAAACTTTCC
Statistics
Matches: 351, Mismatches: 50, Indels: 21
0.83 0.12 0.05
Matches are distributed among these distances:
428 3 0.01
429 60 0.17
430 217 0.62
431 68 0.19
432 3 0.01
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (431 bp):
AAATCACATCATTGAGTCTAAATAGTATGTCACTTTGTAAACAACTTTTGGTCTGTAAATTAAAT
ACTTATTTACGTGAGAAATGTTTCTCTCTTACTCCTTGGTCTAAAATCCGAACTGTTCAAACTTT
TACGAGTTCTTTTATAACTTGGTTCCTCAAAGTATTCAATACGATCTATTACTTCAAGCAATTTT
TCAAACATTCCATGATCGGGAAATCTCATCATTTGGTCTAAATAGTATGTCATTTTGTAAACAAC
TTTTGGACTTTGAATTAAAAACTTATTGACGTGAGAATTGTTTCTCTCTTGGTCCTTGGCCGAAA
ATCCGAACTTGTCAAACTGTTACGAGTTCTTTTACAACTTAGGTTCCTTAAAGTATTCAAGACGA
TCCATTCATTCGAGTAAGTTTCAGAACACTCCATGATTGGA
Found at i:431995 original size:156 final size:155
Alignment explanation
Indices: 431711--432029 Score: 383
Period size: 156 Copynumber: 2.0 Consensus size: 155
431701 TTGACGTGAG
* * * *
431711 AATTGTTTCTCTCTTGGTCCTTGGCCGAACTTCTTAACTTGTCAAACTTTTATGGGTTCTTTTAC
1 AATTGTTTCTCTCTTGGTCCTTGGCCGAACTTCTGAACTTGGCAAACTTTTACGAGTTCTTTTAC
* * * * *
431776 AACTTAGGTTCTTCTAAGTATTCAAGACGATCCATTCATTTGAGTAAGTTTCTAAACTTTCCATG
66 AACTTAGGTTCTTCAAAGTAATCAAGACGATCCATTCATTCGAGCAAGTTTCTAAACATTCCATG
* *
431841 CTCAAGAAATTTC-ATCTTTTGGTCTA
131 CTC-AGAAA-ATCGATCATTTGGTCTA
* *
431867 AATTGTTTCTCTCTTGGTTCTTGGCCGAGCTT-TCGAACTTGGCAAACTTTTACGAGTTCTTTTA
1 AATTGTTTCTCTCTTGGTCCTTGGCCGAACTTCT-GAACTTGGCAAACTTTTACGAGTTCTTTTA
* * * * * * *
431931 TAACTTTGGTTCCTT-AAAGTAATCAAGTCGATCCATTCCTTCGAGCAATTTTTTGAACATTCCA
65 CAACTTAGGTT-CTTCAAAGTAATCAAGACGATCCATTCATTCGAGCAAGTTTCTAAACATTCCA
*
431995 TGCTCGGAAAATCGTATCATTTGGTCTA
129 TGCTCAGAAAATCG-ATCATTTGGTCTA
432023 AATTGTT
1 AATTGTT
432030 AGTCATTTTG
Statistics
Matches: 138, Mismatches: 21, Indels: 8
0.83 0.13 0.05
Matches are distributed among these distances:
154 2 0.01
155 5 0.04
156 128 0.93
157 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.15, T:0.41
Consensus pattern (155 bp):
AATTGTTTCTCTCTTGGTCCTTGGCCGAACTTCTGAACTTGGCAAACTTTTACGAGTTCTTTTAC
AACTTAGGTTCTTCAAAGTAATCAAGACGATCCATTCATTCGAGCAAGTTTCTAAACATTCCATG
CTCAGAAAATCGATCATTTGGTCTA
Found at i:432960 original size:55 final size:55
Alignment explanation
Indices: 432901--433011 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
432891 AAGAGGTGTG
432901 AAAGGCTTTTAAGGGGCTGCCTTGAATATTTGGAGAGTCTTGGACTTTAAATGGC
1 AAAGGCTTTTAAGGGGCTGCCTTGAATATTTGGAGAGTCTTGGACTTTAAATGGC
432956 AAAGGCTTTTAAGGGGCTGCCTTGAATATTTGGAGAGTCTTGGACTTTAAATGGC
1 AAAGGCTTTTAAGGGGCTGCCTTGAATATTTGGAGAGTCTTGGACTTTAAATGGC
433011 A
1 A
433012 GTTTGGGACA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (55 bp):
AAAGGCTTTTAAGGGGCTGCCTTGAATATTTGGAGAGTCTTGGACTTTAAATGGC
Found at i:433257 original size:32 final size:32
Alignment explanation
Indices: 433221--433283 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
433211 GCCATCCATA
* *
433221 CATGTACCTGAAATATATTAATCAGCAAATTG
1 CATGTACCTGAAAAACATTAATCAGCAAATTG
*
433253 CATGTACCTGAAAAACATTAATCAGCTAATT
1 CATGTACCTGAAAAACATTAATCAGCAAATT
433284 AATTTTAGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.41, C:0.17, G:0.11, T:0.30
Consensus pattern (32 bp):
CATGTACCTGAAAAACATTAATCAGCAAATTG
Found at i:434656 original size:217 final size:215
Alignment explanation
Indices: 434146--435050 Score: 880
Period size: 217 Copynumber: 4.2 Consensus size: 215
434136 CAATTTTATG
* * ** * * * *
434146 AACATCCCATGCTCGGGGAATCACATCATTAAGTCTAAATAGTTTTTCACTTTGTAAACAACTAT
1 AACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTATGTCATTTTGTAAACAACTTT
* * * * * * * * **
434211 TGGTTTTTGAATTAAAAACTTTTTTGCGTGAGATTTATTTCTCTCTTGCTCCTTGGCCTAACTTC
66 TGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTCCTTGG-CAAAAATC
* * * * *
434276 TTAACTTGTCAAACTTTTACGAGTTCCTTTATAACTTCGGTTCCTTAAATTTTTCAATAC-A---
130 TTAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* * *
434337 ATCTATTCAAGCAATTTTCCA
195 ATTTACTCGAGCAATTTTCCA
** * * * * *
434358 AACATTCTGTGCTCGGGTAATCTCATCATTATTTGGTCTAAATAGTTTGTCATTTTGTAAATAGC
1 AACATTCCATGCTCGGG-AA-ATCA-CATCATTTGGTCTAAATAGTATGTCATTTTGTAAACAAC
* * * *
434423 TTTTGGACTTTGAATTAAAAACTTATTAACATGAGAATTGTTTCTCTCGTGGTTCTTGGCAAGAA
63 TTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTCCTTGGC-A-AA
** * *
434488 AATCCGAACTTGTCAAACTTTTATGAGTTCTTTTATTACTTCGGTTCCTTAAAGTATTCAATACG
126 AATCTTAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* *
434553 ATTCATTTACTCGAGCAATTTTCAA
191 ATCCATTTACTCGAGCAATTTTCCA
* *
434578 AACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAATAGTATGTCATTTTGTAAACAACTTT
1 AACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTATGTCATTTTGTAAACAACTTT
* * * * * * * **
434643 TGGTCTGTGAATTAAAAATTTATTTACATGAAAATTGTTTCTATTTTGGTTCTTGAC-CTAA-CT
66 TGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTCCTTGGCAAAAATCT
* * * * *
434706 TAACTCT-TCAAACTTTTATGAGTTCTTTTACAACTTCGGTTCTTTTAAGTATTCAAGATGAACC
131 TAACT-TGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* * * * * *
434770 ATTCATTTGAGTAGTTTTCCT
195 ATTTACTCGAGCAATTTTCCA
* * * *
434791 AACTTTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGAATGTCATTTTGCAAACAACTTT
1 AACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTATGTCATTTTGTAAACAACTTT
* * * **
434856 TGGTCATTGAATTAAAAAACTAATTTACATAAGAATTGTTTCTCTCTTGGTCCTTGGCCAAACTT
66 TGGTCTTTGAATT-AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTCCTTGG-CAAAAAT
* * *
434921 CTTAACTTGTCAAACTTTTATGAGTTCTTCTT-CAACTTCTGTTCTTCTT--AGCATTCAAGACG
129 CTTAACTTGTCAAACTTTTATGAGTTCTT-TTATAACTTCGGTTC--CTTAAAGTATTCAAGACG
*
434983 ATCCA-TTCCTTCGAGCAACTTTT-CA
191 ATCCATTTAC-TCGAGCAA-TTTTCCA
* *
435008 AACATTCCATGCTTGAGAAATCACATCATTTGGTCTAAATAGT
1 AACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGT
435051 TTTTCTTTGA
Statistics
Matches: 563, Mismatches: 110, Indels: 35
0.80 0.16 0.05
Matches are distributed among these distances:
212 14 0.02
213 141 0.25
214 42 0.07
215 80 0.14
216 59 0.10
217 184 0.33
218 8 0.01
219 4 0.01
220 31 0.06
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.40
Consensus pattern (215 bp):
AACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTATGTCATTTTGTAAACAACTTT
TGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTCCTTGGCAAAAATCT
TAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
TTTACTCGAGCAATTTTCCA
Found at i:434938 original size:430 final size:427
Alignment explanation
Indices: 434146--436347 Score: 1573
Period size: 430 Copynumber: 5.2 Consensus size: 427
434136 CAATTTTATG
* * ** * * * *
434146 AACATCCCATGCTCGGGGAATCACATCATTAAGTCTAAATAGTTTTTCACTTTGTAAACAACTAT
1 AACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTATGTCATTTTGTAAACAACTTT
* * * * * * * * * * *
434211 TGGTTTTTGAATTAAAAACTTTTTTGCGTGAGATTTATTTCTCTCTTGCTCCTTGGCCTAACTTC
66 TGGTCTTTGAATTAAAAACTTATTTACATGAAAATTGTTTCTCTTTTGGTTCTTGACCTAACTTC
* * * * * *
434276 TTAACT-TGTCAAACTTTTACGAGTTCCTTTATAACTTCGGTTCCTTAAATTTTTC-A-AT--A-
131 --AACTCT-TCAAACTTTTA-TAGTTCTTTTACAACTTCGGTTCTTTAAAGTATTCAAGATGAAC
* * * * * * ** * *
434335 CAATCTATTCAAGCAATTTTCCAAACATTCTGTGCTCGGGTAATCTCATCATTATTTGGTCTAAA
192 CATTCT-TT-GAGTAATTTTTCGAACTTTCCATGCTCGGGAAATCGCATC---ATTTGGTCTAAA
* * * * *
434400 TAGTTTGTCATTTTGTAAATAGCTTTTGGACTTTGAATTAAAAACTTATTAACATGAGAATTGTT
252 TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATAAGAATTGTT
* * ** * * *
434465 TCTCTCGTGGTTCTTGGCAAGAAAATCCGAACTTGTCAAACTTTTATGAGTTCTTTTATTACTTC
317 TCTCTCTTGGTTCTTGGCCA-AACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* *
434530 GGTTCCTTAAAGTATTCAATACGATTCATTTACTCGAGCAATTTTCAA
381 GGTTCCTTAAAGTATTCAAGACGATTCATTTCCTCGAGCAATTTTC-A
* *
434578 AACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAATAGTATGTCATTTTGTAAACAACTTT
1 AACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTATGTCATTTTGTAAACAACTTT
* * *
434643 TGGTCTGTGAATTAAAAATTTATTTACATGAAAATTGTTTCTATTTTGGTTCTTGACCTAACTT-
66 TGGTCTTTGAATTAAAAACTTATTTACATGAAAATTGTTTCTCTTTTGGTTCTTGACCTAACTTC
*
434707 AACTCTTCAAACTTTTATGAGTTCTTTTACAACTTCGGTTCTTTTAAGTATTCAAGATGAACCAT
131 AACTCTTCAAACTTTTAT-AGTTCTTTTACAACTTCGGTTCTTTAAAGTATTCAAGATGAACCAT
* * * **
434772 TCATTTGAGTAGTTTTCCTAACTTTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGAATG
195 TC-TTTGAGTAATTTTTCGAACTTTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG
* * *
434837 TCATTTTGCAAACAACTTTTGGTCATTGAATTAAAAAACTAATTTACATAAGAATTGTTTCTCTC
259 TCATTTTGTAAACAACTTTTGGTCTTTGAATT-AAAAACTTATTTACATAAGAATTGTTTCTCTC
* * * * *
434902 TTGGTCCTTGGCCAAACTTCTTAACTTGTCAAACTTTTATGAGTTCTTCTT-CAACTTCTGTTCT
323 TTGGTTCTTGGCCAAACTTCTGAACTTGTCAAACTTTTACGAGTTCTT-TTATAACTTCGGTTC-
* *
434966 TCTT--AGCATTCAAGACGATCCA-TTCCTTCGAGCAACTTTTCA
386 -CTTAAAGTATTCAAGACGATTCATTTCC-TCGAGCAA-TTTTCA
* *
435008 AACATTCCATGCTTGAGAAATCACATCATTTGGTCT--A-A--A--T-A----G--------TTT
1 AACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTATGTCATTTTGTAAACAACTTT
* * * *
435053 T--TCTTTGAATTAAAAACTCATTTACATGAGAATTGTTTCTCTCTTGATTCTT--CGCTGAACT
66 TGGTCTTTGAATTAAAAACTTATTTACATGAAAATTGTTTCTCTTTTGGTTCTTGAC-CT-AACT
* * * * * * * *
435114 TCCGAACTTTTCAAACTTTTATAAGTTCTTCTATAACTTTGGTTCCTTAAAATATTTAAGATGAT
129 T-C-AACTCTTCAAACTTTTAT-AGTTCTTTTACAACTTCGGTTCTTTAAAGTATTCAAGATGAA
* * * * * *
435179 CCATTCCTTTGAGAAATTTTTCGAACATTCCATGCTTGGGAAATAGCATCATTTGGCCTAAATTG
191 CCATT-CTTTGAGTAATTTTTCGAACTTTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG
* * *
435244 TTAGTCATTTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTC
255 TTTGTCA-TTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATAAGAATTGTTTC
* * * * ** * * *
435309 TCTCTT-ATTCTTGGACGAACTT-TCGAACTTGCCAAACACTTAAGAGTTCTTTTGTAACTTCGA
319 TCTCTTGGTTCTTGGCCAAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGG
* ** * *
435372 ATCCGGAGAGTATTCAAGACGATTCA-TTCCT-TAGTCCAATTTTCCA
383 TTCCTTAAAGTATTCAAGACGATTCATTTCCTCGAG--CAATTTT-CA
* * * * *
435418 AACTTTCCATGCTCGGG-AATCGCACCATTTGGTCAAAATAGTGTGTCATTTTGTAAACAACTTT
1 AACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTATGTCATTTTGTAAACAACTTT
* * * *
435482 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTCCTTGGCC-AAGC-T
66 TGGTCTTTGAATTAAAAACTTATTTACATGAAAATTGTTTCTCTTTTGGTTCTTGACCTAA-CTT
* * ** * * *
435545 ----TCTT--ATCTTGTA-A-AACTTTTACAA-----GTTCTTT----TA--CAA-CT--TCAAT
130 CAACTCTTCAAACTTTTATAGTTCTTTTACAACTTCGGTTCTTTAAAGTATTCAAGATGAACCAT
* * * * ** * * * *
435588 T-TTT--CTTATTATTCAAGACGATCCATGCTCGAGAAATCACATCGTTTGGTCTAAATAGTTTT
195 TCTTTGAGTAATTTTTCGA-ACTTTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG
* * * * * *
435650 TCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTCATTTACGTGAGAATCGTTCCTCTCT
259 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATAAGAATTGTTTCTCTCT
* *** * * * *
435715 TGGTTCTTCGCTGCACTTCTAAACCTGTCAAACTTTTACGAGTTATTTTATAACTTTGGTTCCTT
324 TGGTTCTTGGCCAAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
* * * * *
435780 AAAATATTCAAAACGATCCA-TTCTTTTGAGCAAATTTTCA
389 AAAGTATTCAAGACGATTCATTTC-CTCGAGC-AATTTTCA
* * * *
435820 AACATTCCATGCTTGAGAAATCACATCATTTGGTC-AATTTGT-TAGTCATTTTGTAAACAACTT
1 AACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTAT-GTCATTTTGTAAACAACTT
* * * *
435883 TTGGTTTTTGAATTAGAAACTTATTTACGT-AATAATTGTTTCTCTTTT-GTTCTTGGA-CGAAC
65 TTGGTCTTTGAATTAAAAACTTATTTACATGAA-AATTGTTTCTCTTTTGGTTCTT-GACCTAAC
* * * * *
435945 TTCCAAACT-TGTAAAAATTTTACTAGTTCTTTTATAACTTCAGTTCATTAAAGTATTCAAGATG
128 TT-C-AACTCT-TCAAACTTTTA-TAGTTCTTTTACAACTTCGGTTCTTTAAAGTATTCAAGATG
** ** * * * *
436009 ATACGTTTCTTCAAGCAATTTTTCGAA-TATTCCATGCTCTGGAAATTGCATCATTTGGGCTAAA
189 A-ACCATTCTTTGAGTAATTTTTCGAACT-TTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* * * * *
436073 TAGTTTGTCATTTTTTAAACAAATTTTGATCCTAT-AATTAAAAACTTATTTACATTAGAATTGT
252 TAGTTTGTCATTTTGTAAACAACTTTTGGT-CTTTGAATTAAAAACTTATTTACATAAGAATTGT
* * ** * * *
436137 TTCTC-CTAT--TGC-T-GCACAAACTTCCGAACTTCACACACTTTTACGAGTTATTTAATAACT
316 TTCTCTCT-TGGTTCTTGGC-CAAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* * *
436197 TCGATTCTTTAAAGTATTCAAGACGA-TC-TAGTCCTTCGAGCAATTTTCTA
379 TCGGTTCCTTAAAGTATTCAAGACGATTCAT-TTCC-TCGAGCAATTTTC-A
* * * * * * *
436247 GACCTTTCATGCACGGGAAATCACATAATTTGGTCTAAATAGTTTGCCATTTTGTAAACAACTTT
1 AACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTATGTCATTTTGTAAACAACTTT
** * * * *
436312 TTATCTTTAAATTAATAACTTATTTACGTGAGAATT
66 TGGTCTTTGAATTAAAAACTTATTTACATGAAAATT
436348 TCTCTTGGTT
Statistics
Matches: 1390, Mismatches: 274, Indels: 216
0.74 0.15 0.11
Matches are distributed among these distances:
401 73 0.05
402 187 0.13
403 26 0.02
404 2 0.00
405 5 0.00
406 1 0.00
407 4 0.00
408 56 0.04
409 23 0.02
410 92 0.07
411 142 0.10
412 29 0.02
413 8 0.01
414 6 0.00
416 1 0.00
417 1 0.00
418 7 0.01
419 7 0.01
420 1 0.00
421 1 0.00
422 9 0.01
423 1 0.00
424 6 0.00
425 2 0.00
426 10 0.01
427 93 0.07
428 57 0.04
429 56 0.04
430 229 0.16
431 106 0.08
432 109 0.08
433 33 0.02
434 6 0.00
435 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.41
Consensus pattern (427 bp):
AACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTATGTCATTTTGTAAACAACTTT
TGGTCTTTGAATTAAAAACTTATTTACATGAAAATTGTTTCTCTTTTGGTTCTTGACCTAACTTC
AACTCTTCAAACTTTTATAGTTCTTTTACAACTTCGGTTCTTTAAAGTATTCAAGATGAACCATT
CTTTGAGTAATTTTTCGAACTTTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATAAGAATTGTTTCTCTCTTG
GTTCTTGGCCAAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
AGTATTCAAGACGATTCATTTCCTCGAGCAATTTTCA
Found at i:435208 original size:194 final size:194
Alignment explanation
Indices: 434862--435241 Score: 482
Period size: 194 Copynumber: 2.0 Consensus size: 194
434852 CTTTTGGTCA
* * **
434862 TTGAATTAAAAAACTAATTTACATAAGAATTGTTTCTCTCTTGGTCCTTGGCCAAACTTCTTAAC
1 TTGAATTAAAAAACTAATTTACATAAGAATTGTTTCTCTCTTGATCCTTCGCCAAACTTCCGAAC
* *
434927 TTGTCAAACTTTTATGAGTTCTTCTTCAACTTCTGTTCTTCTTAGCATTCAAGACGATCCATTCC
66 TTGTCAAACTTTTATAAGTTCTTCTTCAACTTCTGTTC-TCTTAACATTCAAGACGATCCATTCC
* *
434992 TTCGAGCAACTTTTCAAACATTCCATGCTTGAGAAATCA-CATCATTTGGTCTAAATAGTTTTTC
130 TTCGAGAAACTTTTCAAACATTCCATGCTTGAGAAAT-AGCATCATTTGGCCTAAATAGTTTTTC
435056 T
194 T
* * * **
435057 TTGAATT-AAAAACTCATTTACATGAGAATTGTTTCTCTCTTGATTCTTCGCTGAACTTCCGAAC
1 TTGAATTAAAAAACTAATTTACATAAGAATTGTTTCTCTCTTGATCCTTCGCCAAACTTCCGAAC
* * * *
435121 TTTTCAAACTTTTATAAGTTCTTCTAT-AACTT-TGGTTC-CTTAAAATATTTAAGATGATCCAT
66 TTGTCAAACTTTTATAAGTTCTTCT-TCAACTTCT-GTTCTCTT--AACATTCAAGACGATCCAT
* * * *
435183 TCCTTTGAGAAATTTTTCGAACATTCCATGCTTGGGAAATAGCATCATTTGGCCTAAAT
127 TCCTTCGAGAAACTTTTCAAACATTCCATGCTTGAGAAATAGCATCATTTGGCCTAAAT
435242 TGTTAGTCAT
Statistics
Matches: 159, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
192 3 0.02
193 2 0.01
194 146 0.92
195 8 0.05
ACGTcount: A:0.28, C:0.19, G:0.12, T:0.40
Consensus pattern (194 bp):
TTGAATTAAAAAACTAATTTACATAAGAATTGTTTCTCTCTTGATCCTTCGCCAAACTTCCGAAC
TTGTCAAACTTTTATAAGTTCTTCTTCAACTTCTGTTCTCTTAACATTCAAGACGATCCATTCCT
TCGAGAAACTTTTCAAACATTCCATGCTTGAGAAATAGCATCATTTGGCCTAAATAGTTTTTCT
Found at i:435309 original size:625 final size:610
Alignment explanation
Indices: 434407--436141 Score: 1832
Period size: 625 Copynumber: 2.8 Consensus size: 610
434397 AAATAGTTTG
* * * * * * *
434407 TCATTTTGTAAATAGCTTTTGGACTTTGAATTAAAAACTTATTAACATGAGAATTGTTTCTCTCG
1 TCATTTTATAAACAACTTTT-GTCTTTGAATTAAAAACTCATTTACATGAGAATTGTTTCTCTCT
* * ** * *
434472 TGGTTCTTGGCAAGAAAATCCGAACTTGTCAAACTTTTATGAGTTCTTTTATTACTTCGGTTCCT
65 TGGTTCTTCGC-TGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTTGGTTCCT
* * * * * * * * *
434537 TAAAGTATTCAATACGATTCATTTAC-TCGAGCAATTTTCAAAACATTCCATGATCGGGAAATCG
129 TAAAATATTCAAAACGATCCA-TTCCTTTGAGAAATTTTC-AAACATTCCATGCTTGGGAAATAG
* * * *
434601 CATCATTTGGTCTAAATAG-TATGTCATTTTGTAAACAACTTTTGGTCTGTGAATTAAAAATTTA
192 CATCATTTGGTCTAAATTGTTA-GTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTTA
* * *
434665 TTTACATGAAAATTGTTTCTATTTTGGTTCTT-GACCTAACTT-AACTCT-TCAAACTTTTATGA
256 TTTACGT-AAAATTGTTTCTCTTTT-GTTCTTGGA-CGAACTTCAACT-TGTCAAACTTTTATGA
* * * *
434727 GTTCTTTTACAACTTCGGTTCTTTTAAGTATTCAAGATGAACCATTCATTTGAGTAGTTTTCCTA
317 GTTCTTTTATAACTTCGGTTC-TTAAAGTATTCAAGATGAACCATTC-TTT-AGTAATTTTCCAA
* *
434792 ACTTTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGAATGTCATTTTGCAAACAACTTTT
379 ACTTTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTATGTCATTTTGTAAACAACTTTT
*
434857 GGTCATTGAATTAAAAAACTAATTTACATAAGAATTGTTTCTCTCTTGGTCCTTGGCCAAACTTC
444 GGTCATTGAATT-AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTCCTTGGCCAAACTTC
* ** **
434922 TTAACTTGTCAAACTTTTATGAGTTCTTCTT-CAACTTCTGTTCTTCTTAGCATTCAAGACGATC
508 TTAACTTGTAAAACTTTTACAAGTTCTT-TTACAACTTCAATTCTTCTTAGCATTCAAGACGATC
*
434986 CATTCCTTCGAGCAACTTTTCAAACATTC-CATGCT-TGAGAA-A-TCACA
572 CA-TCC-TCGAG-AA---ATC--ACA-TCGCATGCTCT-A-AATAGT-ACA
* * *
435033 TCATTTGGTCTAAA-TAGTTTT-TCTTTGAATTAAAAACTCATTTACATGAGAATTGTTTCTCTC
1 TCATTT--TATAAACAACTTTTGTCTTTGAATTAAAAACTCATTTACATGAGAATTGTTTCTCTC
* * * *
435096 TTGATTCTTCGCTGAACTTCCGAACTTTTCAAACTTTTATAAGTTCTTCTATAACTTTGGTTCCT
64 TTGGTTCTTCGCTGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTTGGTTCCT
* * * *
435161 TAAAATATTTAAGATGATCCATTCCTTTGAGAAATTTTTCGAACATTCCATGCTTGGGAAATAGC
129 TAAAATATTCAAAACGATCCATTCCTTTGAGAAA-TTTTCAAACATTCCATGCTTGGGAAATAGC
*
435226 ATCATTTGGCCTAAATTGTTAGTCATTTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTTAT
193 ATCATTTGGTCTAAATTGTTAGTCA-TTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTTAT
* * * ** *
435291 TTACGTAAGAATTGTTTCTCTCTTATTCTTGGACGAACTTTCGAACTTGCCAAACACTTAAGAGT
257 TTACGTAA-AATTGTTTCTCTTTTGTTCTTGGACGAAC-TTC-AACTTGTCAAACTTTTATGAGT
* * * ** * * ** *
435356 TCTTTTGTAACTTCGAATCCGGAGAGTATTCAAGACGATTCATTCCTTAGTCCAATTTTCCAAAC
319 TCTTTTATAACTTCG-GTTCTTAAAGTATTCAAGATGAACCATTCTTTAGT--AATTTTCCAAAC
* * *
435421 TTTCCATGCTCGGG-AATCGCACCATTTGGTCAAAATAGTGTGTCATTTTGTAAACAACTTTTGG
381 TTTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTATGTCATTTTGTAAACAACTTTTGG
* * * * *
435485 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTCCTTGGCCAAGCTTCTTA
446 TCATTGAATTAAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTCCTTGGCCAAACTTCTTA
* * ** *
435550 TCTTGTAAAACTTTTACAAGTTCTTTTACAACTTCAATTTTTCTTATTATTCAAGACGATCCATG
511 ACTTGTAAAACTTTTACAAGTTCTTTTACAACTTCAATTCTTCTTAGCATTCAAGACGATCCATC
** * ***
435615 CTCGAGAAATCACATCGTTTGGTCTAAATAGTTTT
576 CTCGAGAAATCACATCGCATGCTCTAAATAGTACA
* * *
435650 TCATTTTATAAACAACTTTTGGTCTTTGAATTAAAAACTCATTTACGTGAGAATCGTTCCTCTCT
1 TCATTTTATAAACAACTTTT-GTCTTTGAATTAAAAACTCATTTACATGAGAATTGTTTCTCTCT
* ** * * *
435715 TGGTTCTTCGCTGCACTTCTAAACCTGTCAAACTTTTACGAGTTATTTTATAACTTTGGTTCCTT
65 TGGTTCTTCGCTGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTTGGTTCCTT
* *
435780 AAAATATTCAAAACGATCCATTCTTTTGAGCAAATTTTCAAACATTCCATGCTTGAGAAATCA-C
130 AAAATATTCAAAACGATCCATTCCTTTGAG-AAATTTTCAAACATTCCATGCTTGGGAAAT-AGC
* *
435844 ATCATTTGGTC-AATTTGTTAGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAGAAACTTATT
193 ATCATTTGGTCTAAATTGTTAGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTTATT
* *
435908 TACGTAATAATTGTTTCTCTTTTGTTCTTGGACGAACTTCCAAACTTGTAAAAATTTTACT-AGT
258 TACGTAA-AATTGTTTCTCTTTTGTTCTTGGACGAACTT-C-AACTTGTCAAACTTTTA-TGAGT
* ** * * * *
435972 TCTTTTATAACTTCAGTTCATTAAAGTATTCAAGATGATACGTTTCTTCAAGCAATTTTTCGAA-
319 TCTTTTATAACTTCGGTTC-TTAAAGTATTCAAGATGA-ACCATTCTT-TAGTAATTTTCCAAAC
* * * * * *
436036 TATTCCATGCTCTGGAAATTGCATCATTTGGGCTAAATAGTTTGTCATTTTTTAAACAAATTTTG
381 T-TTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTATGTCATTTTGTAAACAACTTTTG
* * *
436101 ATCCTAT-AATTAAAAACTTATTTACATTAGAATTGTTTCTC
445 GTCAT-TGAATTAAAAACTTATTTACATAAGAATTGTTTCTC
436142 CTATTGCTGC
Statistics
Matches: 926, Mismatches: 150, Indels: 75
0.80 0.13 0.07
Matches are distributed among these distances:
615 10 0.01
616 146 0.16
617 107 0.12
618 162 0.17
619 6 0.01
622 2 0.00
623 8 0.01
624 123 0.13
625 217 0.23
626 63 0.07
627 75 0.08
628 7 0.01
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (610 bp):
TCATTTTATAAACAACTTTTGTCTTTGAATTAAAAACTCATTTACATGAGAATTGTTTCTCTCTT
GGTTCTTCGCTGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTTGGTTCCTTA
AAATATTCAAAACGATCCATTCCTTTGAGAAATTTTCAAACATTCCATGCTTGGGAAATAGCATC
ATTTGGTCTAAATTGTTAGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTTATTTAC
GTAAAATTGTTTCTCTTTTGTTCTTGGACGAACTTCAACTTGTCAAACTTTTATGAGTTCTTTTA
TAACTTCGGTTCTTAAAGTATTCAAGATGAACCATTCTTTAGTAATTTTCCAAACTTTCCATGCT
CGGGAAATCGCATCATTTGGTCTAAATAGTATGTCATTTTGTAAACAACTTTTGGTCATTGAATT
AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTCCTTGGCCAAACTTCTTAACTTGTAAAA
CTTTTACAAGTTCTTTTACAACTTCAATTCTTCTTAGCATTCAAGACGATCCATCCTCGAGAAAT
CACATCGCATGCTCTAAATAGTACA
Found at i:435498 original size:214 final size:217
Alignment explanation
Indices: 435054--435525 Score: 560
Period size: 216 Copynumber: 2.2 Consensus size: 217
435044 AAATAGTTTT
* *
435054 TCTTTGAATTAAAAACTCATTTACATGAGAATTGTTTCTCTCTTGATTCTTCGCTGAACTTCCGA
1 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTCGCTGAACTTCCGA
** ** * ** ** * *
435119 ACTTTTCAAACTTTTATAAGTTCTTCTATAACTTTGGTTCCTTAAAATATTTAAGATGATCCATT
66 ACTTGCCAAACACTTATAAGTTCTTCTATAACTTCGAATCCGGAAAATATTCAAGACGATCCATT
* * * * * * * *
435184 CCTTTGAGAAATTTTTCGAACATTCCATGCTTGGGAAATAGCATCATTTGGCCTAAATTGTTAGT
131 CCTTAGACAAATTTTCCAAACATTCCATGCTCGGGAAATAGCACCATTTGGCCAAAATAGTTAGT
435249 CATTTTTGTAAACAACTTTTGG
196 CATTTTTGTAAACAACTTTTGG
* * * *
435271 TTTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTT-ATTCTTGGAC-GAACTTTCG
1 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTCG-CTGAACTTCCG
* * * * *
435334 AACTTGCCAAACACTTA-AGAGTTCTTTTGTAACTTCGAATCCGGAGAGTATTCAAGACGATTCA
65 AACTTGCCAAACACTTATA-AGTTCTTCTATAACTTCGAATCCGGAAAATATTCAAGACGATCCA
* * * * *
435398 TTCCTTAGTCCAATTTTCCAAACTTTCCATGCTCGGG-AATCGCACCATTTGGTCAAAATAGTGT
129 TTCCTTAGACAAATTTTCCAAACATTCCATGCTCGGGAAATAGCACCATTTGGCCAAAATAGT-T
435462 -GTCA-TTTTGTAAACAACTTTTGG
193 AGTCATTTTTGTAAACAACTTTTGG
435485 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
1 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
435526 TTTGGTCCTT
Statistics
Matches: 215, Mismatches: 37, Indels: 9
0.82 0.14 0.03
Matches are distributed among these distances:
214 58 0.27
215 25 0.12
216 91 0.42
217 41 0.19
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (217 bp):
TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTCGCTGAACTTCCGA
ACTTGCCAAACACTTATAAGTTCTTCTATAACTTCGAATCCGGAAAATATTCAAGACGATCCATT
CCTTAGACAAATTTTCCAAACATTCCATGCTCGGGAAATAGCACCATTTGGCCAAAATAGTTAGT
CATTTTTGTAAACAACTTTTGG
Found at i:435790 original size:187 final size:184
Alignment explanation
Indices: 435423--435800 Score: 438
Period size: 187 Copynumber: 2.0 Consensus size: 184
435413 TTCCAAACTT
* * *
435423 TCCATGCTCGGGAATCGCACCATTTGGTCAAAATAGTGTGTCATTTTGTAAACAACTTTTGGTCT
1 TCCATGCTCGGAAATCACACCATTTGGTCAAAATAGTGTGTCATTTTATAAACAACTTTTGGTCT
* * * * * * * *
435488 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGGTCCTTGGCCAAGCTTCTTATCT
66 TTGAATTAAAAACTCATTTACGTGAGAATCGTTCCTCTCTTGGTCCTTCGCCAAGCTTCTAAACC
* * * * *
435553 TGTAAAACTTTTACAAGTTCTTTTACAACTTCAATTTTTCTTATTATTCAAGACGA
131 TGTAAAACTTTTACAAGTTATTTTACAACTT--ATGTTCCTTAATATTCAAAACGA
* * * * *
435609 TCCATGCTCGAGAAATCACATCGTTTGGTCTAAATAGTTTTTCATTTTATAAACAACTTTTGGTC
1 TCCATGCTCG-GAAATCACACCATTTGGTCAAAATAGTGTGTCATTTTATAAACAACTTTTGGTC
*
435674 TTTGAATTAAAAACTCATTTACGTGAGAATCGTTCCTCTCTTGGTTCTTCGCTGC-A-CTTCTAA
65 TTTGAATTAAAAACTCATTTACGTGAGAATCGTTCCTCTCTTGGTCCTTCGC--CAAGCTTCTAA
* * *
435737 ACCTGTCAAACTTTTACGAGTTATTTTATAACTT-TGGTTCCTTAAAATATTCAAAACGA
128 ACCTGTAAAACTTTTACAAGTTATTTTACAACTTAT-GTTCCTT--AATATTCAAAACGA
435796 TCCAT
1 TCCAT
435801 TCTTTTGAGC
Statistics
Matches: 161, Mismatches: 25, Indels: 11
0.82 0.13 0.06
Matches are distributed among these distances:
184 1 0.01
185 5 0.03
186 10 0.06
187 143 0.89
188 1 0.01
189 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.13, T:0.40
Consensus pattern (184 bp):
TCCATGCTCGGAAATCACACCATTTGGTCAAAATAGTGTGTCATTTTATAAACAACTTTTGGTCT
TTGAATTAAAAACTCATTTACGTGAGAATCGTTCCTCTCTTGGTCCTTCGCCAAGCTTCTAAACC
TGTAAAACTTTTACAAGTTATTTTACAACTTATGTTCCTTAATATTCAAAACGA
Found at i:436085 original size:215 final size:213
Alignment explanation
Indices: 435609--436401 Score: 699
Period size: 213 Copynumber: 3.7 Consensus size: 213
435599 TTCAAGACGA
* * * *
435609 TCCATGCTC-GAGAAATCACATCGTTTGGTCTAAATAGTTTTTCATTTTATAAACAACTTTTGGT
1 TCCATGCTCTGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGAT
* * * * * *
435673 CTTTGAATTAAAAACTCATTTACGTGAGAATCGTTCCTCTCTTGGTTCTTCG-CTGCACTTCTAA
66 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-TTGGTTCTTGGAC-GAACTTCCAA
* * * * * * * *
435737 ACCTGTCAAACTTTTACGAGTTATTTTATAACTTTGGTTCCTTAAAATATTCAAAACGATCCATT
129 ACTTGTAAAAATTTTACGAGTTATTTTATAAC-TTCGTTCATTAAAGTATTCAAGACGAT-CTTT
* * * *
435802 CTTTTGAGCAAATTTTCAAACAT
192 C-TTCGAGCAATTTTTCGAATAT
* * * *
435825 TCCATGCT-TGAGAAATCACATCATTTGGTC-AATTTGTTAGTCATTTTGTAAACAACTTTTGGT
1 TCCATGCTCTGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGAT
* * * * *
435888 TTTTGAATTAGAAACTTATTTACGTAATAATTGTTTCTCTTTTGTTCTTGGACGAACTTCCAAAC
66 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTTGGTTCTTGGACGAACTTCCAAAC
* * *
435953 TTGTAAAAATTTTACTAGTTCTTTTATAACTTCAGTTCATTAAAGTATTCAAGATGATACGTTTC
131 TTGTAAAAATTTTACGAGTTATTTTATAACTTC-GTTCATTAAAGTATTCAAGACGAT-C-TTTC
*
436018 TTCAAGCAATTTTTCGAATAT
193 TTCGAGCAATTTTTCGAATAT
** * * *
436039 TCCATGCTCTG-GAAATTGCATCATTTGGGCTAAATAGTTTGTCATTTTTTAAACAAATTTTGAT
1 TCCATGCTCTGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGAT
* * * * * *
436103 CCTAT-AATTAAAAACTTATTTACATTAGAATTGTTTCTCCTATT-G--C-TGCACAAACTTCCG
66 -CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT-CT-TTGGTTCTTGGACGAACTTCCA
* * * * *
436163 AACTT-CACACACTTTTACGAGTTATTTAATAACTTCGATTCTTTAAAGTATTCAAGACGATCTA
128 AACTTGTA-AAAATTTTACGAGTTATTTTATAACTTCG-TTCATTAAAGTATTCAAGACGATCT-
* * *
436227 GTCCTTCGAGCAATTTTCTAGACCT-T
190 -TTCTTCGAGCAATTTT-TCGA-ATAT
* * * * *
436253 T-CATGCAC-GGGAAATCACATAATTTGGTCTAAATAGTTTGCCATTTTGTAAACAACTTTTTAT
1 TCCATGCTCTGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGAT
* * * *
436316 CTTTAAATTAATAACTTATTTACGTGAGAA---TTTCTC-TTGGTTCTTGGACGAACTTTCGAAC
66 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTTGGTTCTTGGACGAACTTCCAAAC
*
436377 TTGTCAAACAA--TTACGAGTTCTTTT
131 TTGT-AAA-AATTTTACGAGTTATTTT
436402 GATACGAAAT
Statistics
Matches: 468, Mismatches: 85, Indels: 53
0.77 0.14 0.09
Matches are distributed among these distances:
207 2 0.00
208 1 0.00
209 1 0.00
210 6 0.01
211 29 0.06
212 8 0.02
213 151 0.32
214 111 0.24
215 124 0.26
216 33 0.07
217 2 0.00
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.41
Consensus pattern (213 bp):
TCCATGCTCTGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGAT
CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTTGGTTCTTGGACGAACTTCCAAAC
TTGTAAAAATTTTACGAGTTATTTTATAACTTCGTTCATTAAAGTATTCAAGACGATCTTTCTTC
GAGCAATTTTTCGAATAT
Found at i:438431 original size:216 final size:216
Alignment explanation
Indices: 437944--439148 Score: 1237
Period size: 216 Copynumber: 5.6 Consensus size: 216
437934 GTATCATCTT
* * * * *
437944 TTCAACACGATCCATTCCTTTGACCAATTTT-ATGAACATTCTATGCTCGAGAAATCACATCA-T
1 TTCAAGACGATCCATTCCTTTGAGCAATTTTCA-GAACATTCCATGCTCGGGAAATCTCATCATT
* * * * * *
438007 TGAGTCTAAATAGTTTTTCACTTTGTACACAACTTTTGGTTTTTGAATTAAAAACTTTTTTTACA
65 TG-GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC-TTATTTACG
* * * *
438072 TGAGAATTGTTTATCTCTTGCTCCTTGGCC------T--AACTTTTCAAACTTTTACGAGTTCTT
128 TGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAATTTCGAACTTGTCAAACTTTTACGAGTTCTT
** *
438129 TTATAACTTCAGTTCCTTAAAGTT
193 TTATAACTTTGGTTCCTTAAAGTA
* * ** * *
438153 TTCAATACGATCTATTCCTTTGAGCAATTTTCCTAACATTCCAGGCTCGGGTAATCTCATCATTT
1 TTCAAGACGATCCATTCCTTTGAGCAATTTTCAGAACATTCCATGCTCGGGAAATCTCATCATTT
* * * * *
438218 GGTCTAAATTGTTTTTCATTTTGTAAATAACTTTTGGACTTTGAATTAAAAACTTATTTATGTGA
66 GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
* * *
438283 GAATTGTTTCTCTCTTGGTTCTTGGCCGAAAATTCGAACTTGTCAAACTGTTACGAGTTTTTTTA
131 GAATTGTTTCTCTCTTGGTTCTTGGCCGAAATTTCGAACTTGTCAAACTTTTACGAGTTCTTTTA
* *
438348 TTACTTCGGTTCCTTAAAGTA
196 TAACTTTGGTTCCTTAAAGTA
* ** * * *
438369 TTCAATACGATCCATTTATTTGAGCAATTTTCAGAACATTTCATGATCGGGAAATTTCATCATTT
1 TTCAAGACGATCCATTCCTTTGAGCAATTTTCAGAACATTCCATGCTCGGGAAATCTCATCATTT
*
438434 GGTCTAAATAGTATGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
66 GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
* * * * * * * * *
438499 GAATTGTTTTTCTCTTGGTCCCTGGCCG-AACTTCTTAACTTGTCATAGTTTTATGGGTTCTTTT
131 GAATTGTTTCTCTCTTGGTTCTTGGCCGAAATTTC-GAACTTGTCAAACTTTTACGAGTTCTTTT
*
438563 ACT-ACTTTGGTT-CTTCTAAGTA
195 A-TAACTTTGGTTCCTT-AAAGTA
* * * * * * * * *
438585 TTCAAGATGATCCATTCATTTGAGTAAGTTTCCA-AACTTTCCCTACTCTGGAAATCGCATCATT
1 TTCAAGACGATCCATTCCTTTGAGCAA-TTTTCAGAACATTCCATGCTCGGGAAATCTCATCATT
* * * * *
438649 TGGTCTAAATAGTATGTCATTTTATAAACAACTTTCGGTCATTGAATTAAAAACTTA-TTAAGTG
65 TGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * ** *
438713 AGAATTGTTTCTCTCTTGGTTATTGGTCGAGCTTTCGAACTTGGCAAACTTTTACGAGTTCTTTT
130 AGAATTGTTTCTCTCTTGGTTCTTGGCCGAAATTTCGAACTTGTCAAACTTTTACGAGTTCTTTT
438778 ATAACTTTGGTTCCTTAAAGTA
195 ATAACTTTGGTTCCTTAAAGTA
* * * * * * *
438800 ATCAAGACGCTCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAGAAAATCGT-ACCATT
1 TTCAAGACGATCCATTCCTTTGAGCAATTTTCAGAACATTCCATGCTCGGGAAATC-TCATCATT
* * * *
438864 TGGTCTAAATTGTTAGTCATTTTGTAAACAAATTTTGGTTTTTGAATTAAAAA-TTCATTTAC--
65 TGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT-ATTTACGT
* * * * * *
438926 AAGAATTGTTTCTCTCTTCGTTCTTCGCCGAACTTTCGATCTTGTCAAACTTTTATGAGTTCTTT
129 GAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAATTTCGAACTTGTCAAACTTTTACGAGTTCTTT
*
438991 TATAACTTTGGTTCCTTAAAATA
194 TATAACTTTGGTTCCTTAAAGTA
* * * ** * * *
439014 TTCAAGACGATTCATTCCTTCGAACAATTTTTTGAACATTCCATGCTTGGGAAATCGCACCATTT
1 TTCAAGACGATCCATTCCTTTGAGCAATTTTCAGAACATTCCATGCTCGGGAAATCTCATCATTT
* * ** * *
439079 GGTCTAGATTGTTCATCATTTTGTAAACAACTTTTGGT-TTTGTTATTAAAAA-TTCATTTACAT
66 GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTG-AATTAAAAACTT-ATTTACGT
*
439142 AAGAATT
129 GAGAATT
439149 TGATGTGAGC
Statistics
Matches: 834, Mismatches: 137, Indels: 43
0.82 0.14 0.04
Matches are distributed among these distances:
208 33 0.04
209 97 0.12
210 3 0.00
213 4 0.00
214 192 0.23
215 165 0.20
216 334 0.40
217 6 0.01
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (216 bp):
TTCAAGACGATCCATTCCTTTGAGCAATTTTCAGAACATTCCATGCTCGGGAAATCTCATCATTT
GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
GAATTGTTTCTCTCTTGGTTCTTGGCCGAAATTTCGAACTTGTCAAACTTTTACGAGTTCTTTTA
TAACTTTGGTTCCTTAAAGTA
Found at i:438827 original size:431 final size:429
Alignment explanation
Indices: 437945--439112 Score: 1222
Period size: 431 Copynumber: 2.7 Consensus size: 429
437935 TATCATCTTT
* * *
437945 TCAACACGATCCATTCCTTTGACCAATTTT-ATGAACA-TTCTATGCTCGAGAAATCACATCA-T
1 TCAACACGATCCATTCCTTTGAGCAATTTTCA-GAACATTTC-ATGCTCGGGAAATCTCATCATT
* * * *
438007 TGAGTCTAAATAGTTTTTCACTTTGTACACAACTTTTGGTTTTTGAATTAAAAACTTTTTTTACA
64 TG-GTCTAAATAG-TTGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAAC-TTATTTAC-
* * * *
438072 TGAGAATTGTTTATCTCTTGCTCCTTG--G--C--C-TAACTTTTCAAACTTTTACGAGTTCTTT
125 TGAGAATTGTTTATCTCTTGGTCCTCGCCGAACTTCTTAACTTGTCAAACTTTTATGAGTTCTTT
** * * * * * *
438130 TATAACTTCAGTTCCTTAAAGTTTTCAATACGATCTATTCCTTTGAGCAATTTTCCTAACATTCC
190 TATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCATTTGAGCAAGTTTCCAAACATTCC
* * * * * * * * * *
438195 AGGCTCGGGTAATCTCATCATTTGGTCTAAATTGTTTTTCATTTTGTAAATAACTTTTGGACTTT
255 AGACTCGGGAAATCGCATCATTTGGTCTAAATAGTATGTCATTTTATAAACAACTTTCGGACATT
* *
438260 GAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAAATTCGAACTTG
320 GAATTAAAAACTTATTTAAGTGAGAATTGTTTCTCTCTTGGTTATTGGCCGAAAATTCGAACTTG
* * * *
438325 TCAAACTGTTACGAGTTTTTTTATTACTTCGGTTCCTTAAAGTAT
385 GCAAACTGTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTAA
* ** * *
438370 TCAATACGATCCATTTATTTGAGCAATTTTCAGAACATTTCATGATCGGGAAATTTCATCATTTG
1 TCAACACGATCCATTCCTTTGAGCAATTTTCAGAACATTTCATGCTCGGGAAATCTCATCATTTG
*
438435 GTCTAAATAGTATGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
66 GTCTAAATAGT-TGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTTATTTAC-TGAG
* * * * *
438500 AATTGTTTTTCTCTTGGTCCCTGGCCGAACTTCTTAACTTGTCATAGTTTTATGGGTTCTTTTAC
129 AATTGTTTATCTCTTGGT-CCTCGCCGAACTTCTTAACTTGTCAAACTTTTATGAGTTCTTTTA-
* * * * *
438565 T-ACTTTGGTT-CTTCTAAGTATTCAAGATGATCCATTCATTTGAGTAAGTTTCCAAACTTTCCC
192 TAACTTTGGTTCCTT-AAAGTATTCAAGACGATCCATTCATTTGAGCAAGTTTCCAAACATTCCA
* * *
438628 TACTCTGGAAATCGCATCATTTGGTCTAAATAGTATGTCATTTTATAAACAACTTTCGGTCATTG
256 GACTCGGGAAATCGCATCATTTGGTCTAAATAGTATGTCATTTTATAAACAACTTTCGGACATTG
* ***
438693 AATTAAAAACTTA-TTAAGTGAGAATTGTTTCTCTCTTGGTTATTGGTCGAGCTTTCGAACTTGG
321 AATTAAAAACTTATTTAAGTGAGAATTGTTTCTCTCTTGGTTATTGGCCGAAAATTCGAACTTGG
* *
438757 CAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTAA
386 CAAACTGTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTAA
* * * * * * * *
438801 TCAAGACGCTCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAGAAAATCGT-ACCATTT
1 TCAACACGATCCATTCCTTTGAGCAATTTTCAGAACATTTCATGCTCGGGAAATC-TCATCATTT
* * *
438865 GGTCTAAATTGTTAGTCATTTTGTAAACAAATTTTGGTTTTTGAATTAAAAA-TTCATTTAC-AA
65 GGTCTAAATAGTT-GTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTT-ATTTACTGA
* * * * *
438928 GAATTGTTTCTCTCTTCGTTCTTCGCCGAACTT-TCGATCTTGTCAAACTTTTATGAGTTCTTTT
128 GAATTGTTTATCTCTT-GGTCCTCGCCGAACTTCT-TAACTTGTCAAACTTTTATGAGTTCTTTT
* * * * * * ***
438992 ATAACTTTGGTTCCTTAAAATATTCAAGACGATTCATTCCTTCGAACAATTTTTTGAACATTCCA
191 ATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCATTTGAGCAAGTTTCCAAACATTCCA
* * * * * *
439057 TG-CTTGGGAAATCGCACCATTTGGTCTAGATTGT-TCATCATTTTGTAAACAACTTT
256 -GACTCGGGAAATCGCATCATTTGGTCTAAATAGTAT-GTCATTTTATAAACAACTTT
439113 TGGTTTTGTT
Statistics
Matches: 613, Mismatches: 107, Indels: 42
0.80 0.14 0.06
Matches are distributed among these distances:
424 28 0.05
425 97 0.16
426 7 0.01
427 1 0.00
428 3 0.00
429 142 0.23
430 8 0.01
431 190 0.31
432 136 0.22
433 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.42
Consensus pattern (429 bp):
TCAACACGATCCATTCCTTTGAGCAATTTTCAGAACATTTCATGCTCGGGAAATCTCATCATTTG
GTCTAAATAGTTGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTTATTTACTGAGAA
TTGTTTATCTCTTGGTCCTCGCCGAACTTCTTAACTTGTCAAACTTTTATGAGTTCTTTTATAAC
TTTGGTTCCTTAAAGTATTCAAGACGATCCATTCATTTGAGCAAGTTTCCAAACATTCCAGACTC
GGGAAATCGCATCATTTGGTCTAAATAGTATGTCATTTTATAAACAACTTTCGGACATTGAATTA
AAAACTTATTTAAGTGAGAATTGTTTCTCTCTTGGTTATTGGCCGAAAATTCGAACTTGGCAAAC
TGTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTAA
Found at i:440680 original size:18 final size:18
Alignment explanation
Indices: 440648--440698 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 18
440638 ATTAGCGTTC
*
440648 AAAAAAATA-AAAATT-A
1 AAAAAAAAAGAAAATTGA
*
440664 AAAATAGAAAGAAAATTTGA
1 AAAA-AAAAAGAAAA-TTGA
440684 AAAAAAAAAGAAAAT
1 AAAAAAAAAGAAAAT
440699 ACAGCAGATT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
16 4 0.14
17 3 0.11
18 5 0.18
19 11 0.39
20 5 0.18
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (18 bp):
AAAAAAAAAGAAAATTGA
Found at i:450717 original size:17 final size:19
Alignment explanation
Indices: 450689--450730 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
450679 TCAAGCGAGG
*
450689 GAAAAAGTAAAAGAGAA-T
1 GAAAAAGTAAAAGAAAATT
450707 GAAAAAG-AAAAGAAAATT
1 GAAAAAGTAAAAGAAAATT
450725 GAAAAA
1 GAAAAA
450731 AAGAAAGGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.71, C:0.00, G:0.19, T:0.10
Consensus pattern (19 bp):
GAAAAAGTAAAAGAAAATT
Found at i:450753 original size:21 final size:20
Alignment explanation
Indices: 450708--450760 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
450698 AAAGAGAATG
*
450708 AAAAAGAAAAGAAAATTGAA
1 AAAAAGAAAAGAAAAATGAA
*
450728 AAAAAGAAAGGAAAAATGAGA
1 AAAAAGAAAAGAAAAATGA-A
450749 GAAAAGAGAAAA
1 -AAAA-AGAAAA
450761 TAAAGTGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 17 0.63
21 1 0.04
22 4 0.15
23 5 0.19
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.06
Consensus pattern (20 bp):
AAAAAGAAAAGAAAAATGAA
Found at i:450771 original size:29 final size:29
Alignment explanation
Indices: 450728--450792 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 29
450718 GAAAATTGAA
*
450728 AAAAAGAAAGG-AAA-AATGAGAGAAAAG
1 AAAAAGAAAGGAAAAGAAGGAGAGAAAAG
*
450755 AGAAAATAAAGTGAAAAGAAGGAGAGAAAAG
1 A-AAAAGAAAG-GAAAAGAAGGAGAGAAAAG
450786 AAAAAGA
1 AAAAAGA
450793 TGAAAAGGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
27 1 0.03
28 8 0.26
29 1 0.03
30 8 0.26
31 13 0.42
ACGTcount: A:0.69, C:0.00, G:0.26, T:0.05
Consensus pattern (29 bp):
AAAAAGAAAGGAAAAGAAGGAGAGAAAAG
Found at i:456943 original size:783 final size:779
Alignment explanation
Indices: 455849--457361 Score: 2507
Period size: 783 Copynumber: 1.9 Consensus size: 779
455839 CCCAAACTAC
*
455849 CATTTAAAGTCCAAGACTCTCCAAATATTCAAGGCAGCCCCTTAAAAGCCTTTCGCACCTCTTGC
1 CATTTAAAGTCCAAGACTCTCCAAATATTCAAGGCAGCCCCTTAAAAGCCTTTCACACCTCTTGC
*
455914 TGAATCTAGCCTAGTCCATTCAGCTCCATTCAACTCCTTAATTTCATTTAATTTAAGCTGATTGG
66 CGAATCTAGCCTAGTCCATTCAGCTCCATTCAACTCCTTAATTTCATTTAATTTAAGCTGATTGG
* * *
455979 AAACATCAAGGGACTTGTCTAATGGCATCACCAATGCTAGAGAAGGTTCAAGGAAGTTTCTAGCT
131 AAACATCAAGGGACTTGTCTAATGGCATCACCAATGCTAGAAAAGGTTCAAGGAAGTTCCCAGCT
**
456044 CCATTAAGCTGAACACATGCTGCCCATTCGATTCCCTAAATGTCTATTCTTTAGCCATGTAATTG
196 CCATTAAGCTGAACACATGCTGCCCATTCGATTCCCTAAATGTCTATTCGCTAGCCATGTAATTG
* *
456109 AGCTATAAATATGAAGCTCTTTAGTTGTATTGAAGACTTTTTTTGATTCTTTGATTAATTTAGAT
261 AGCTATAAATACGAAGCTCTTTAGTTGTATTGAAGACTTTTTTTGATTCTTTGATGAATTTAGAT
* *
456174 ATCTTCGTGAGTTTATTCAGCTCTCAATTTTCGTTTAAGACTCAAGTTGACTTATTTAGCTTGCT
326 ATCTTCGTGAGTTTATTCAACTCTCAATTTTCGTTTAAGACTCAAGTTGACTTATCTAGCTTGCT
* * * *
456239 AGTGGCATCATCCTTATTTCTTTGAACTTATCACTCTTAAATCGAGTGTGGTGTTAACCTTTGAT
391 AGTGACATCATCCTTACTTCTTTGAACTTATCACTCTTAAACCGAGTGTGATGTTAACCTTTGAT
*
456304 ACCTTTGGTTCCT-ATCTCTTCATAGATAGTGGGTCAAGGTCCTTTCTATCAACCTTCCATCACC
456 ACCTTAGGTT-CTGATCTCTTCATAGATAGTGGGTCAAGGTCCTTTCTATCAACCTTCCATCACC
456368 TTAAGTATCTTATAAGTCTC-GAGTCAATACTCCTTCATAGTATTGGTTCATTCTTGACCTTAAG
520 TTAAGTATCTTATAAGTCTCGGA-TCAATACTCC-TCATAGTATTGGTTCATTCTTGACCTTAAG
** * *
456432 CTTACTTATCCATTTTAACTTTCATCTTTGCCTTG-C-TTACATCCATACTTAGTCGTATTCCTT
583 CTTACTTATCCATTTTAACTTTCATCTTCACCTTGTCGTTACATCCATACTTAGTCGAATTCCGT
456495 TAAACACAAACTAAGAACGATACTTCTCCATTCAACGATCGAGCACAACTACGACTCGAATACTT
648 TAAACACAAACTAAGAACGATACTTCTCCATTCAACGATCGAGCACAACTACGACTCGAATACTT
456560 TTACAAACTCGAGATCATACTATTTGGTATCAGAGCTAGCTAAAATCGAGGAGTACGGACATTCG
713 TTACAAACTCGAGATCATACTATTTGGTATCAGAGCTAGCTAAAATCGAGGAGTACGGACATTCG
456625 AG
778 AG
456627 CATTTAAAGTCCAAGACTCTCCAAATATTCAAGGCAGCCCCTTAAAAGCCTTTCACACCTCTTGG
1 CATTTAAAGTCCAAGACTCTCCAAATATTCAAGGCAGCCCCTTAAAAGCCTTTCACACCTCTT-G
* * *
456692 CCGAATCTAGCCTAGTTCGTTCAGCTCCATTCAGCTCCTTACTTAATTTCATTTAATTTAAGCTG
65 CCGAATCTAGCCTAGTCCATTCAGCTCCATTCAACT-C---CTTAATTTCATTTAATTTAAGCTG
* *
456757 ATTGGAAACATTAAGGGACTTGTCTAATGGCGTCACCAATGCTAGAAAAGGTTCAAGGAAGTTCC
126 ATTGGAAACATCAAGGGACTTGTCTAATGGCATCACCAATGCTAGAAAAGGTTCAAGGAAGTTCC
* *
456822 CAGCTCCATTAAGCTGAACACATGCTGCCCATTC-AGTTCCCTAAGTGTCTATTCGGCTATCCAT
191 CAGCTCCATTAAGCTGAACACATGCTGCCCATTCGA-TTCCCTAAATGTCTATTC-GCTAGCCAT
*
456886 GTGATTGAGCTATAAATACGAAGCTCTTTAGTTGTATTGAAGACTTTTTTT-ATTCTTTGATGAA
254 GTAATTGAGCTATAAATACGAAGCTCTTTAGTTGTATTGAAGACTTTTTTTGATTCTTTGATGAA
* *
456950 TTTTGATATCTTCGTGAGTTTATTCAACTCTCAATTTTCGTTTAAGACTCAAGTTGATTTATCTA
319 TTTAGATATCTTCGTGAGTTTATTCAACTCTCAATTTTCGTTTAAGACTCAAGTTGACTTATCTA
* * *
457015 GCTTGCTAGTGACGTCATCCTTGCTTCTTTGAACTTATCACTCTTAAACCGAGTGTGATGTTCAC
384 GCTTGCTAGTGACATCATCCTTACTTCTTTGAACTTATCACTCTTAAACCGAGTGTGATGTTAAC
457080 CTTTGATACCTTAGGTTCTGATCTCTTCATAGATAGTGGGTCAAGGTCCTTTCTATCAACCTTCC
449 CTTTGATACCTTAGGTTCTGATCTCTTCATAGATAGTGGGTCAAGGTCCTTTCTATCAACCTTCC
* *
457145 ATCACCTTAAGTGTCTTATAAGTCTTGGATCAATACTCCTCATAGTATTGGTTCATTCTTGACCT
514 ATCACCTTAAGTATCTTATAAGTCTCGGATCAATACTCCTCATAGTATTGGTTCATTCTTGACCT
*
457210 TAAGCTTACTTATCCATTTTAACTTTCATCTTCACCTTGCTTCGTTTCATCCATACTTAGTCGAA
579 TAAGCTTACTTATCCATTTTAACTTTCATCTTCACCTTG--TCGTTACATCCATACTTAGTCGAA
* * * *
457275 TTTCGTTAAACTCAAACTAAGAACGATACTTCTCCATTTAACGATCGGGCACAACTACGACTCGA
642 TTCCGTTAAACACAAACTAAGAACGATACTTCTCCATTCAACGATCGAGCACAACTACGACTCGA
*
457340 ATACTTTTGCAAACTCGAGATC
707 ATACTTTTACAAACTCGAGATC
457362 GTATCAATTT
Statistics
Matches: 681, Mismatches: 41, Indels: 18
0.92 0.06 0.02
Matches are distributed among these distances:
778 62 0.09
779 33 0.05
780 1 0.00
782 66 0.10
783 361 0.53
784 57 0.08
785 1 0.00
786 100 0.15
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.36
Consensus pattern (779 bp):
CATTTAAAGTCCAAGACTCTCCAAATATTCAAGGCAGCCCCTTAAAAGCCTTTCACACCTCTTGC
CGAATCTAGCCTAGTCCATTCAGCTCCATTCAACTCCTTAATTTCATTTAATTTAAGCTGATTGG
AAACATCAAGGGACTTGTCTAATGGCATCACCAATGCTAGAAAAGGTTCAAGGAAGTTCCCAGCT
CCATTAAGCTGAACACATGCTGCCCATTCGATTCCCTAAATGTCTATTCGCTAGCCATGTAATTG
AGCTATAAATACGAAGCTCTTTAGTTGTATTGAAGACTTTTTTTGATTCTTTGATGAATTTAGAT
ATCTTCGTGAGTTTATTCAACTCTCAATTTTCGTTTAAGACTCAAGTTGACTTATCTAGCTTGCT
AGTGACATCATCCTTACTTCTTTGAACTTATCACTCTTAAACCGAGTGTGATGTTAACCTTTGAT
ACCTTAGGTTCTGATCTCTTCATAGATAGTGGGTCAAGGTCCTTTCTATCAACCTTCCATCACCT
TAAGTATCTTATAAGTCTCGGATCAATACTCCTCATAGTATTGGTTCATTCTTGACCTTAAGCTT
ACTTATCCATTTTAACTTTCATCTTCACCTTGTCGTTACATCCATACTTAGTCGAATTCCGTTAA
ACACAAACTAAGAACGATACTTCTCCATTCAACGATCGAGCACAACTACGACTCGAATACTTTTA
CAAACTCGAGATCATACTATTTGGTATCAGAGCTAGCTAAAATCGAGGAGTACGGACATTCGAG
Found at i:459741 original size:37 final size:38
Alignment explanation
Indices: 459676--459772 Score: 151
Period size: 37 Copynumber: 2.6 Consensus size: 38
459666 TTAAATAGAG
*
459676 TTTTAATGTGTCTTAGTTTTATACATATTTAATAGTTGT
1 TTTTAATGTGTCTTAGTTTGATA-ATATTTAATAGTTGT
*
459715 TTTTAATGTGTCTTAGTTTGAT-ATATTTAATTGTTGT
1 TTTTAATGTGTCTTAGTTTGATAATATTTAATAGTTGT
*
459752 TTTTAATGTGTCTAAGTTTGA
1 TTTTAATGTGTCTTAGTTTGA
459773 GACAAATTAA
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
37 34 0.62
39 21 0.38
ACGTcount: A:0.24, C:0.04, G:0.15, T:0.57
Consensus pattern (38 bp):
TTTTAATGTGTCTTAGTTTGATAATATTTAATAGTTGT
Found at i:461721 original size:216 final size:215
Alignment explanation
Indices: 461333--462509 Score: 1223
Period size: 216 Copynumber: 5.5 Consensus size: 215
461323 ATGAGTTCTT
* *
461333 TTCAAGACGATCCATTCCTTTGACCAA-TTTT-ATGAACATTCCATGCTCGAGAAATCACATCA-
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTCA-GAACATTCCATGCTCGAGAAATCACATCAT
* * * * *
461395 ATGAGTCTAAATAGTTTTTCACTTTGTAAACAACTTTTGGTTTTTGAA-TAAAACACTTTTTTAC
65 TTG-GTCTAAATAGTTTTTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAA-ACTTATTTAC
* * ** *
461459 GTGAGAATTGTTTCCCTCTTGGTTCTTGGCCGAAAATCCGAACTTGTCAAACTTTTACAATTTCT
128 GTGAGAATTGTTTCTCTCTTGG-TCTTGG-AGAACTTCCGAACTTGTCAAACTTTTACAAGTTCT
*
461524 TTTATTACTTTGGTTCCTTAAAGTA
191 TTTATAACTTTGGTTCCTTAAAGTA
** * * * * *
461549 TTC-AGTACGATCCATTTATTTGAGCAA-TTTTCAGAACATTCCATGATTGGGAAATCGCATCAT
1 TTCAAG-ACGATCCATTCCTTCGAGCAATTTTTCAGAACATTCCATGCTCGAGAAATCACATCAT
* * * * *
461612 TTAGTCTAAATAATATATCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTATGT
65 TTGGTCTAAATAGTTTTTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGT
* ** *
461677 GAGAATTGTTTCTCTCTTGGTCATTGGGAAAACTTCTTAACTTGTCAAACTTTTACGAGTTCTTT
130 GAGAATTGTTTCTCTCTTGGTC-TT-GGAGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTT
* * *
461742 TACAACTCCT-GTTCGTCTT--TGTA
193 TATAACT-TTGGTTC--CTTAAAGTA
* *
461765 TTCAAGACGATCCATTCCTTCGAGCAACTTTTCA-AACATTCCATGCTCGAGAAATCGCATCATT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTCAGAACATTCCATGCTCGAGAAATCACATCATT
* * *
461829 TGGTCTAAATAGTTTTTCATTTTGTAAACAGCTTTTGGTCTTTGAATTAAAAACTCATTTACGTG
66 TGGTCTAAATAGTTTTTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTG
** ** * **
461894 AGAATCATTTCTCTCTTGGTTCTTCGCCGAACTTCCAAACATT-TCAAACTTTTATGAGTTCTTT
131 AGAATTGTTTCTCTCTTGG-TCTT-GGAGAACTTCCGAAC-TTGTCAAACTTTTACAAGTTCTTT
*
461958 TATAACTTTGGTTCCTTAAAATA
193 TATAACTTTGGTTCCTTAAAGTA
* * * * *
461981 TTCAAGACGATCCATTCCTTCGAGCAATTTTT-TGGACATTCCATGCTTGGGAAATCGCATCATT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTCAGAACATTCCATGCTCGAGAAATCACATCATT
* *
462045 TGGTCTAAAT--TTTTAGTCATTTTGTAAACAAATTTTTGTTTTTGAATTAAAAACTTATTTACG
66 TGGTCTAAATAGTTTT--TCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACG
* * * * * * *
462108 TAAGAATTGCTTCTTTCTTGTTCTTGGACGAACTTCCGAACTTATCAAACTTTTACTAGCTCTTT
129 TGAGAATTGTTTCTCTCTTGGTCTTGGA-GAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTT
*
462173 TATAACTTCGGTTCCTTAAAGTA
193 TATAACTTTGGTTCCTTAAAGTA
* * *
462196 TTCAAGACAATCCATTCCTTCAAGCAATTTTTC-GAACATTCCATGCTTTG-GAAATCACATCAT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTCAGAACATTCCATGC-TCGAGAAATCACATCAT
* * * * *
462259 TTGGTCTAAATAGTTTTTCATTTTTTATACAAC-TTTTGCTATTTGAATTTAAAACTTATTTATG
65 TTGGTCTAAATAGTTTTTCATTTTGTAAACAACTTTTTG-TCTTTGAATTAAAAACTTATTTACG
* * * * * *
462323 TGAGAATTATTTTTCTCTTGGTCCTTCGATGAACTTCTGAACTTGCCAAACATTTA-AGAGTTCT
129 TGAGAATTGTTTCTCTCTTGGT-CTTGGA-GAACTTCCGAACTTGTCAAACTTTTACA-AGTTCT
* * * *
462387 TTTGTAACTTCGGATCCTAAAAGTA
191 TTTATAACTTTGGTTCCTTAAAGTA
* * * *
462412 TTCGAGACGATCCATTCCTT-AATCCAATTTTTC-GAACTTTCCATGC-CGAG-AATCACATCAT
1 TTCAAGACGATCCATTCCTTCGA-GCAATTTTTCAGAACATTCCATGCTCGAGAAATCACATCAT
* *
462473 TTGGTCTAAA-A-ATTGTCATTTTGTAAACAACTTTTTG
65 TTGGTCTAAATAGTTTTTCATTTTGTAAACAACTTTTTG
462510 ATACGAGACG
Statistics
Matches: 813, Mismatches: 117, Indels: 65
0.82 0.12 0.07
Matches are distributed among these distances:
212 16 0.02
213 6 0.01
214 37 0.05
215 178 0.22
216 547 0.67
217 26 0.03
218 3 0.00
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (215 bp):
TTCAAGACGATCCATTCCTTCGAGCAATTTTTCAGAACATTCCATGCTCGAGAAATCACATCATT
TGGTCTAAATAGTTTTTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTG
AGAATTGTTTCTCTCTTGGTCTTGGAGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTAT
AACTTTGGTTCCTTAAAGTA
Found at i:462422 original size:431 final size:429
Alignment explanation
Indices: 461333--462509 Score: 1412
Period size: 432 Copynumber: 2.7 Consensus size: 429
461323 ATGAGTTCTT
* * *
461333 TTCAAGACGATCCATTCCTTTGACCAATTTTAT-GAACATTCCATGCTCGAGAAATCACATCA-A
1 TTCAAGACGATCCATTCCTTCGAGCAATTTT-TCGAACATTCCATGCTCGAGAAATCACATCATT
* * *
461396 TGAGTCTAAATAGTTTTTCACTTTGTAAACAACTTTTGGTTTTTGAA-TAAAACACTTTTTTACG
65 TG-GTCTAAATAGTTTTTCATTTTGTAAACAACTTTTGGTATTTGAATTAAAA-ACTTATTTACG
* * * ** *
461460 TGAGAATTGTTTCCCTCTTGGTTCTTGGCCGAAAATCCGAACTTGTCAAACTTTTACA-ATTTCT
128 TGAGAATTATTTCTCTCTTGGTTCTTCGCCGAACTTCCGAACTTGTCAAACTTTTA-AGAGTTCT
* * ** *
461524 TTTATTACTTTGGTTCCTTAAAGTATTCAGTACGATCCATTTATTTGAGCAATTTTCAGAACATT
192 TTTATAACTTTGGTTCCTAAAAGTATTCAG-ACGATCCA-TTCCTTGAGCAATTTTTAGAACATT
* * *
461589 CCATGATTGGGAAATCGCATCATTTAGTCTAAATAATATA-TCATTTTGTAAACAACTTTTTGTC
255 CCATGCTTGGGAAATCGCATCATTTGGTCTAAAT-ATTTAGTCATTTTGTAAACAACTTTTTGTC
* * * **
461653 TTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTCATTGGGAAAACTTCTTAAC
319 TTTGAATTAAAAACTTATTTACGTAAGAATTGCTTCTCTCTTGGTCATTGGGAAAACTTCCGAAC
* * * *
461718 TTGTCAAACTTTTACGAGTTCTTTTACAACTCCTGTTCGTCTTTGTA
384 TTATCAAACTTTTACGAGCTCTTTTACAACTCCGGTTCG-CTTAGTA
* * *
461765 TTCAAGACGATCCATTCCTTCGAGCAACTTTTCAAACATTCCATGCTCGAGAAATCGCATCATTT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTT
* * *
461830 GGTCTAAATAGTTTTTCATTTTGTAAACAGCTTTTGGTCTTTGAATTAAAAACTCATTTACGTGA
66 GGTCTAAATAGTTTTTCATTTTGTAAACAACTTTTGGTATTTGAATTAAAAACTTATTTACGTGA
* * *
461895 GAATCATTTCTCTCTTGGTTCTTCGCCGAACTTCCAAACATT-TCAAACTTTTATGAGTTCTTTT
131 GAATTATTTCTCTCTTGGTTCTTCGCCGAACTTCCGAAC-TTGTCAAACTTTTAAGAGTTCTTTT
* *
461959 ATAACTTTGGTTCCTTAAAA-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGGACATTCC
195 ATAACTTTGGTTCC-TAAAAGTATTC-AGACGATCCATTCCTT-GAGCAATTTTTAGAACATTCC
* * *
462023 ATGCTTGGGAAATCGCATCATTTGGTCTAAATTTTTAGTCATTTTGTAAACAAATTTTTGTTTTT
257 ATGCTTGGGAAATCGCATCATTTGGTCTAAATATTTAGTCATTTTGTAAACAACTTTTTGTCTTT
* * *
462088 GAATTAAAAACTTATTTACGTAAGAATTGCTTCTTTCTTGTTC-TT-GGACGAACTTCCGAACTT
322 GAATTAAAAACTTATTTACGTAAGAATTGCTTCTCTCTTGGTCATTGGGA-AAACTTCCGAACTT
* * *
462151 ATCAAACTTTTACTAGCTCTTTTATAACTTCGGTTC-CTTAAAGTA
386 ATCAAACTTTTACGAGCTCTTTTACAACTCCGGTTCGCTT--AGTA
* * *
462196 TTCAAGACAATCCATTCCTTCAAGCAATTTTTCGAACATTCCATGCTTTG-GAAATCACATCATT
1 TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC-TCGAGAAATCACATCATT
* * * * *
462260 TGGTCTAAATAGTTTTTCATTTTTTATACAACTTTTGCTATTTGAATTTAAAACTTATTTATGTG
65 TGGTCTAAATAGTTTTTCATTTTGTAAACAACTTTTGGTATTTGAATTAAAAACTTATTTACGTG
* * ** * * *
462325 AGAATTATTTTTCTCTTGGTCCTTCGATGAACTTCTGAACTTGCCAAACATTTAAGAGTTCTTTT
130 AGAATTATTTCTCTCTTGGTTCTTCGCCGAACTTCCGAACTTGTCAAACTTTTAAGAGTTCTTTT
* * * * * * *
462390 GTAACTTCGGATCCTAAAAGTATTCGAGACGATCCATTCCTTAATCCAATTTTTCGAACTTTCCA
195 ATAACTTTGGTTCCTAAAAGTATTC-AGACGATCCATTCCTTGA-GCAATTTTTAGAACATTCCA
* * * *
462455 TGC-CGAG-AATCACATCATTTGGTCTAAA-AATT-GTCATTTTGTAAACAACTTTTTG
258 TGCTTGGGAAATCGCATCATTTGGTCTAAATATTTAGTCATTTTGTAAACAACTTTTTG
462510 ATACGAGACG
Statistics
Matches: 642, Mismatches: 87, Indels: 37
0.84 0.11 0.05
Matches are distributed among these distances:
427 22 0.03
428 2 0.00
429 23 0.04
430 13 0.02
431 269 0.42
432 298 0.46
433 15 0.02
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (429 bp):
TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTT
GGTCTAAATAGTTTTTCATTTTGTAAACAACTTTTGGTATTTGAATTAAAAACTTATTTACGTGA
GAATTATTTCTCTCTTGGTTCTTCGCCGAACTTCCGAACTTGTCAAACTTTTAAGAGTTCTTTTA
TAACTTTGGTTCCTAAAAGTATTCAGACGATCCATTCCTTGAGCAATTTTTAGAACATTCCATGC
TTGGGAAATCGCATCATTTGGTCTAAATATTTAGTCATTTTGTAAACAACTTTTTGTCTTTGAAT
TAAAAACTTATTTACGTAAGAATTGCTTCTCTCTTGGTCATTGGGAAAACTTCCGAACTTATCAA
ACTTTTACGAGCTCTTTTACAACTCCGGTTCGCTTAGTA
Found at i:464548 original size:74 final size:74
Alignment explanation
Indices: 464427--464568 Score: 230
Period size: 74 Copynumber: 1.9 Consensus size: 74
464417 TGGAGGGATA
* * * *
464427 CAATGTTTCATTCAAGATTTTTTAAATGAATCAACTCATTCATTTATGAATGACGAATGATGGTT
1 CAATGTTTCATTCAAGAGTTTTTAAACGAATCAACACATTCATTTATGAATGACGAATGATGGCT
464492 GTTCACATT
66 GTTCACATT
* *
464501 CAATGTTTCATTCAAGAGTTTTTCAACGAATCAACACATTCATTTATGAATGATGAATGATGGCT
1 CAATGTTTCATTCAAGAGTTTTTAAACGAATCAACACATTCATTTATGAATGACGAATGATGGCT
464566 GTT
66 GTT
464569 AACTTTCATT
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
74 62 1.00
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39
Consensus pattern (74 bp):
CAATGTTTCATTCAAGAGTTTTTAAACGAATCAACACATTCATTTATGAATGACGAATGATGGCT
GTTCACATT
Found at i:466488 original size:50 final size:50
Alignment explanation
Indices: 466396--466516 Score: 127
Period size: 50 Copynumber: 2.4 Consensus size: 50
466386 TGATATAAAC
** *
466396 TTTAACTAACATGGGAGTTACATAATGCATGATAGGAATTATGATGCATA
1 TTTAACTAACATGAAAGTTACATAATGCATGATAGGAATTATGATGCAAA
* * ** *
466446 TTTAACTAACATGTAAGTTACTTAATGCATG-TCATTATTTATGATGCAAA
1 TTTAACTAACATGAAAGTTACATAATGCATGAT-AGGAATTATGATGCAAA
* *
466496 CTTATCTAATCATGAAAGTTA
1 TTTAACTAA-CATGAAAGTTA
466517 ATGGATGTCA
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
49 1 0.02
50 48 0.81
51 10 0.17
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (50 bp):
TTTAACTAACATGAAAGTTACATAATGCATGATAGGAATTATGATGCAAA
Found at i:468771 original size:20 final size:19
Alignment explanation
Indices: 468745--468791 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
468735 AAAAAGTGAT
*
468745 AAAAAATTCGAGAAAAAAA
1 AAAAAATACGAGAAAAAAA
*
468764 AGAAAAATACGAGAAAAATA
1 A-AAAAATACGAGAAAAAAA
468784 AAAAAATA
1 AAAAAATA
468792 TTGTGTGGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 8 0.32
20 17 0.68
ACGTcount: A:0.74, C:0.04, G:0.11, T:0.11
Consensus pattern (19 bp):
AAAAAATACGAGAAAAAAA
Found at i:470046 original size:37 final size:36
Alignment explanation
Indices: 469967--470036 Score: 95
Period size: 37 Copynumber: 1.9 Consensus size: 36
469957 CAAACATGAA
* * **
469967 ATTAATTTGTCTCAAACTTCGACACATTAAAACAACT
1 ATTAATATGTATCAAACTAAGACACATTAAAAC-ACT
470004 ATTAATATGTATCAAACTAAGACACATTAAAAC
1 ATTAATATGTATCAAACTAAGACACATTAAAAC
470037 CTCATTTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 29 1.00
ACGTcount: A:0.46, C:0.19, G:0.06, T:0.30
Consensus pattern (36 bp):
ATTAATATGTATCAAACTAAGACACATTAAAACACT
Found at i:470793 original size:49 final size:49
Alignment explanation
Indices: 470731--470855 Score: 196
Period size: 49 Copynumber: 2.6 Consensus size: 49
470721 GCAGTATATT
* * **
470731 TGCAAATCAGTGGTGGCTTGTTCACATATTAAATCAGTGGTAATAAATC
1 TGCATATCAGTGGTGGCTTGTCCACATATTAAATCAGTGACAATAAATC
*
470780 TGCATATCAGTGGTGGCTTGTCCACATATTAAATCAGTGACAGTAAATC
1 TGCATATCAGTGGTGGCTTGTCCACATATTAAATCAGTGACAATAAATC
*
470829 TACATATCAGTGGTGGCTTGTCCACAT
1 TGCATATCAGTGGTGGCTTGTCCACAT
470856 TAGTGTTATT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 70 1.00
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.32
Consensus pattern (49 bp):
TGCATATCAGTGGTGGCTTGTCCACATATTAAATCAGTGACAATAAATC
Found at i:475309 original size:80 final size:81
Alignment explanation
Indices: 475151--475312 Score: 220
Period size: 80 Copynumber: 2.0 Consensus size: 81
475141 TCATTAAGGA
* * * * *
475151 GAAATGCCATGCCTTTTCAGCTACATTAGATCCTAATGAATGAAGAGACATGACTCATTGGCTTT
1 GAAATGCCATGCCTTTTCAACTACATCAGATCC--ATGAATCAAGAGACATGACTCATTAGCTTC
*
475216 CCTACAAGTGTTAAAAAC
64 CCTACAAGAGTTAAAAAC
*
475234 GAAATTGCCATGCCTTTTTAACTACATCAGATCC-T-AATCAAGAGACATGACTCATTAGCTTCC
1 GAAA-TGCCATGCCTTTTCAACTACATCAGATCCATGAATCAAGAGACATGACTCATTAGCTTCC
475297 CTACAAGAGTTAAAAA
65 CTACAAGAGTTAAAAA
475313 TAAATTAGTG
Statistics
Matches: 71, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
80 40 0.56
81 1 0.01
83 4 0.06
84 26 0.37
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (81 bp):
GAAATGCCATGCCTTTTCAACTACATCAGATCCATGAATCAAGAGACATGACTCATTAGCTTCCC
TACAAGAGTTAAAAAC
Found at i:476481 original size:25 final size:24
Alignment explanation
Indices: 476445--476491 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 24
476435 AAACAACTTC
476445 TAAAAAAAACTC-AAGAGCAATTCT
1 TAAAAAAAACTCAAAGAG-AATTCT
476469 TAAAGAAAAACTCAAAGAGAATT
1 TAAA-AAAAACTCAAAGAGAATT
476492 ATTATTAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 4 0.19
25 12 0.57
26 5 0.24
ACGTcount: A:0.57, C:0.13, G:0.11, T:0.19
Consensus pattern (24 bp):
TAAAAAAAACTCAAAGAGAATTCT
Found at i:477155 original size:15 final size:15
Alignment explanation
Indices: 477121--477156 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
477111 ACTTCTTTTC
* *
477121 CTTCCTTTCTTTCTT
1 CTTCTTTTCCTTCTT
477136 CTTCTTTTCCTTCTT
1 CTTCTTTTCCTTCTT
477151 CTTCTT
1 CTTCTT
477157 CCACTTGTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (15 bp):
CTTCTTTTCCTTCTT
Found at i:485714 original size:26 final size:26
Alignment explanation
Indices: 485684--485752 Score: 77
Period size: 26 Copynumber: 2.7 Consensus size: 26
485674 GACCCTCTTA
* *
485684 TGCAGCGACAACTCTGGACATATTCAC
1 TGCAGCGACAATTCTGGACAGATTC-C
* * *
485711 -GCAGCGATAATTTTGAACAGATTCC
1 TGCAGCGACAATTCTGGACAGATTCC
485736 TGCAGCGACAATTCTGG
1 TGCAGCGACAATTCTGG
485753 GTGCAATGCT
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
25 1 0.03
26 32 0.97
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.25
Consensus pattern (26 bp):
TGCAGCGACAATTCTGGACAGATTCC
Found at i:487109 original size:38 final size:38
Alignment explanation
Indices: 487064--487140 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
487054 CTAGAACTCT
487064 AACTAATCTAAACAAGAAACTTGAGCTCTCTTAATTAA
1 AACTAATCTAAACAAGAAACTTGAGCTCTCTTAATTAA
*
487102 AACTAATCTAAACAAGAAACTTGTGCTCTCTTAATTAA
1 AACTAATCTAAACAAGAAACTTGAGCTCTCTTAATTAA
487140 A
1 A
487141 CTTGAACTCT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.44, C:0.18, G:0.08, T:0.30
Consensus pattern (38 bp):
AACTAATCTAAACAAGAAACTTGAGCTCTCTTAATTAA
Found at i:489576 original size:19 final size:20
Alignment explanation
Indices: 489543--489581 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
489533 ACCCATAGAA
*
489543 TATTTTTTTTATTTTTCTCG
1 TATTTTTCTTATTTTTCTCG
489563 TATTTTTCTT-TTTTTCTCG
1 TATTTTTCTTATTTTTCTCG
489582 ACTTTTTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.08, C:0.13, G:0.05, T:0.74
Consensus pattern (20 bp):
TATTTTTCTTATTTTTCTCG
Found at i:495223 original size:51 final size:51
Alignment explanation
Indices: 495144--495246 Score: 188
Period size: 51 Copynumber: 2.0 Consensus size: 51
495134 TTCGACATTC
*
495144 TGATGAAAGCGTAAATGGTGAGCATTTGGAATCAGTACTTGTAGACACGAT
1 TGATGAAAGCATAAATGGTGAGCATTTGGAATCAGTACTTGTAGACACGAT
*
495195 TGATGAAAGCATAAATGGTGAGCGTTTGGAATCAGTACTTGTAGACACGAT
1 TGATGAAAGCATAAATGGTGAGCATTTGGAATCAGTACTTGTAGACACGAT
495246 T
1 T
495247 CAATGTATTA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.28
Consensus pattern (51 bp):
TGATGAAAGCATAAATGGTGAGCATTTGGAATCAGTACTTGTAGACACGAT
Found at i:501192 original size:19 final size:19
Alignment explanation
Indices: 501168--501206 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
501158 GTCGTGTGTG
501168 TGTGTGTGCTT-ATTTTATT
1 TGTGTGTG-TTAATTTTATT
501187 TGTGTGTGTTAATTTTATT
1 TGTGTGTGTTAATTTTATT
501206 T
1 T
501207 TGATTGTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 2 0.11
19 17 0.89
ACGTcount: A:0.13, C:0.03, G:0.21, T:0.64
Consensus pattern (19 bp):
TGTGTGTGTTAATTTTATT
Found at i:501303 original size:4 final size:4
Alignment explanation
Indices: 501294--501380 Score: 81
Period size: 4 Copynumber: 22.2 Consensus size: 4
501284 CAAATAAACG
* *
501294 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGGA AG-A AGGA
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA
* * * * *
501341 AGGA AGGA AG-A AGGA AG-A AGGA AGAA AGAGA GGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGA-A AGAA AGAA A
501381 TAAGAAGGAG
Statistics
Matches: 75, Mismatches: 4, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
3 9 0.12
4 63 0.84
5 3 0.04
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:501341 original size:7 final size:7
Alignment explanation
Indices: 501329--501366 Score: 67
Period size: 7 Copynumber: 5.3 Consensus size: 7
501319 GAAAGAAAGA
501329 AAGGAAG
1 AAGGAAG
501336 AAGGAAGG
1 AAGGAA-G
501344 AAGGAAG
1 AAGGAAG
501351 AAGGAAG
1 AAGGAAG
501358 AAGGAAG
1 AAGGAAG
501365 AA
1 AA
501367 AGAGAGGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
7 23 0.77
8 7 0.23
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (7 bp):
AAGGAAG
Found at i:501345 original size:11 final size:11
Alignment explanation
Indices: 501329--501375 Score: 60
Period size: 11 Copynumber: 4.2 Consensus size: 11
501319 GAAAGAAAGA
501329 AAGGAAGAAGG
1 AAGGAAGAAGG
501340 AAGGAAGGAA-G
1 AAGGAA-GAAGG
501351 AAGGAAGAAGG
1 AAGGAAGAAGG
*
501362 AAGAAAGAGAGG
1 AAGGAAGA-AGG
501374 AA
1 AA
501376 AGAAATAAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
10 3 0.09
11 21 0.66
12 8 0.25
ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00
Consensus pattern (11 bp):
AAGGAAGAAGG
Found at i:503817 original size:45 final size:45
Alignment explanation
Indices: 503751--503886 Score: 227
Period size: 45 Copynumber: 3.0 Consensus size: 45
503741 GGAGGAGTAT
* * *
503751 AGTATTGCGGTGGCTCATCAAACTGAGTCTGATATCCTTGGCTTG
1 AGTATTGTGGTGGCTCGTCAAACTGAGCCTGATATCCTTGGCTTG
*
503796 AGTATTGTTGTGGCTCGTCAAACTGAGCCTGATATCCTTGGCTTG
1 AGTATTGTGGTGGCTCGTCAAACTGAGCCTGATATCCTTGGCTTG
*
503841 AGTATTGTGGTGGCTCGTCAAATTGAGCCTGATATCCTTGGCTTG
1 AGTATTGTGGTGGCTCGTCAAACTGAGCCTGATATCCTTGGCTTG
503886 A
1 A
503887 TGAGCTAGGG
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 85 1.00
ACGTcount: A:0.19, C:0.19, G:0.27, T:0.35
Consensus pattern (45 bp):
AGTATTGTGGTGGCTCGTCAAACTGAGCCTGATATCCTTGGCTTG
Found at i:505804 original size:16 final size:16
Alignment explanation
Indices: 505783--505830 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
505773 TGATGGGGAT
505783 ATTATTTTGGTAATTA
1 ATTATTTTGGTAATTA
*
505799 ATTATTTT-AT-ATT-
1 ATTATTTTGGTAATTA
505812 A-TATTTTGGTAATTA
1 ATTATTTTGGTAATTA
505827 ATTA
1 ATTA
505831 GTTAGGTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
12 6 0.23
13 2 0.08
14 6 0.23
15 2 0.08
16 10 0.38
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.58
Consensus pattern (16 bp):
ATTATTTTGGTAATTA
Found at i:506616 original size:21 final size:20
Alignment explanation
Indices: 506586--506628 Score: 68
Period size: 21 Copynumber: 2.1 Consensus size: 20
506576 TCTTACTTAC
506586 TACTACTAACAAAATAAAAT
1 TACTACTAACAAAATAAAAT
*
506606 TACTAACTAACAAAATTAAAT
1 TACT-ACTAACAAAATAAAAT
506627 TA
1 TA
506629 AAGTAAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.58, C:0.14, G:0.00, T:0.28
Consensus pattern (20 bp):
TACTACTAACAAAATAAAAT
Found at i:507721 original size:19 final size:18
Alignment explanation
Indices: 507674--507721 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
507664 GATTTAATAA
*
507674 AAAATTGTATATCAAATT
1 AAAATTATATATCAAATT
507692 AAAATTAATATAT-AACATT
1 AAAATT-ATATATCAA-ATT
507711 ATAAATTATAT
1 A-AAATTATAT
507722 CGAAATTCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 8 0.31
19 13 0.50
20 5 0.19
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (18 bp):
AAAATTATATATCAAATT
Found at i:512471 original size:195 final size:201
Alignment explanation
Indices: 512125--512488 Score: 510
Period size: 196 Copynumber: 1.8 Consensus size: 201
512115 TGTGACAGCC
* *
512125 TACAGTAACTTCCATCATACATCCAATCTTACCACAAGAGATACCTAATAGAAGACCAATACAAA
1 TACAGTAACTTCCATCATACATCCAATCTAACCACAAGAGA-ACCCAATAGAAGACCAATACAAA
* * * * *
512190 ACAAGCATAAAAACGCAGGAAAGCCCGTCAAATAAAATCCCAAATTTCGAACAAAAAAGTGAGAA
65 ACAAGCATAAAAACGCAAGAAAACCCATCAAATAAAACCCCAAATTTCAAACAAAAAAGTGAGAA
* *
512255 TTAAACCCTAAAACACAACAAACATCTGACATAAACAAATACCGTACAGTATTGAACCTCAACAA
130 TTAAACCCTAAAACACAACAAACAGCTAACATAAACAAATACCGTACAGTATTGAACCTCAACAA
512320 CATCATG
195 CATCATG
*
512327 TACAG-AACTTCCATCATACATCCAATC-AACCA-AA-AG-GCCCAACT-GAAGACCAATACAAA
1 TACAGTAACTTCCATCATACATCCAATCTAACCACAAGAGAACCCAA-TAGAAGACCAATACAAA
* **
512386 GC-AGCATAAAAAACGCAAGAAAACCCATCAAATAAAACCCCGGATTTCAAAC-AAAAAGTGAGA
65 ACAAGCAT-AAAAACGCAAGAAAACCCATCAAATAAAACCCCAAATTTCAAACAAAAAAGTGAGA
* *
512449 ATTAGACCCTAAAATACAACAAACAGCTAACATAAACAAA
129 ATTAAACCCTAAAACACAACAAACAGCTAACATAAACAAA
512489 ACCCATTAAG
Statistics
Matches: 145, Mismatches: 15, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
195 52 0.36
196 57 0.39
197 1 0.01
198 2 0.01
199 2 0.01
200 4 0.03
201 22 0.15
202 5 0.03
ACGTcount: A:0.49, C:0.25, G:0.10, T:0.16
Consensus pattern (201 bp):
TACAGTAACTTCCATCATACATCCAATCTAACCACAAGAGAACCCAATAGAAGACCAATACAAAA
CAAGCATAAAAACGCAAGAAAACCCATCAAATAAAACCCCAAATTTCAAACAAAAAAGTGAGAAT
TAAACCCTAAAACACAACAAACAGCTAACATAAACAAATACCGTACAGTATTGAACCTCAACAAC
ATCATG
Found at i:513290 original size:30 final size:30
Alignment explanation
Indices: 513254--513310 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
513244 ATTTATTGTT
513254 AATA-TTTT-AATATATTAGATATTAATTTTA
1 AATATTTTTAAATA-ATTA-ATATTAATTTTA
513284 AATATTTTTAAATAATTAATATTAATT
1 AATATTTTTAAATAATTAATATTAATT
513311 ATTTATAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
30 13 0.52
31 8 0.32
32 4 0.16
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53
Consensus pattern (30 bp):
AATATTTTTAAATAATTAATATTAATTTTA
Found at i:513308 original size:24 final size:24
Alignment explanation
Indices: 513274--513380 Score: 65
Period size: 21 Copynumber: 4.8 Consensus size: 24
513264 TATATTAGAT
* *
513274 ATTAATTTTAAATATTTTTAAATA
1 ATTAATATTAAATATTTATAAATA
*
513298 ATTAATATTAATTATTTAT-AA-A
1 ATTAATATTAAATATTTATAAATA
* *
513320 ATTTA-ATTAGAATA--TATAAATT
1 ATTAATATTA-AATATTTATAAATA
*
513342 A-T-ATTTTAAATA-TT-TAAAT-
1 ATTAATATTAAATATTTATAAATA
513361 A-TAATCATTAAATATTTATA
1 ATTAAT-ATTAAATATTTATA
513381 TTTAGATATT
Statistics
Matches: 66, Mismatches: 8, Indels: 19
0.71 0.09 0.20
Matches are distributed among these distances:
19 2 0.03
20 15 0.23
21 18 0.27
22 11 0.17
23 4 0.06
24 16 0.24
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.50
Consensus pattern (24 bp):
ATTAATATTAAATATTTATAAATA
Found at i:513357 original size:33 final size:33
Alignment explanation
Indices: 513262--513383 Score: 94
Period size: 33 Copynumber: 3.6 Consensus size: 33
513252 TTAATATTTT
513262 AATATATTAGATATTA-ATTTTAAATATTT--TTA
1 AATA-ATTA-ATATTATATTTTAAATATTTAATTA
513294 AATAATTAATATTAATTATTTATAAA-ATTTAATTA
1 AATAATTAATATT-A-TATTT-TAAATATTTAATTA
*
513329 GAAT-ATATAA-ATTATATTTTAAATATTTAAATA
1 -AATAAT-TAATATTATATTTTAAATATTTAATTA
*
513362 TAATCATTAAATATTTATATTT
1 -AATAATT-AATA-TTATATTT
513384 AGATATTAAC
Statistics
Matches: 75, Mismatches: 2, Indels: 22
0.76 0.02 0.22
Matches are distributed among these distances:
30 5 0.07
31 5 0.07
32 8 0.11
33 25 0.33
34 9 0.12
35 9 0.12
36 14 0.19
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.50
Consensus pattern (33 bp):
AATAATTAATATTATATTTTAAATATTTAATTA
Found at i:528216 original size:42 final size:42
Alignment explanation
Indices: 528157--528241 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
528147 ACATTTGAAA
*
528157 TTTAGAATTGAATGATATCTATTTCAATCTTGCCTTTACTGT
1 TTTAGAACTGAATGATATCTATTTCAATCTTGCCTTTACTGT
528199 TTTAGAACTGAATGATATCTATTTCAATCTTGCCTTTACTGT
1 TTTAGAACTGAATGATATCTATTTCAATCTTGCCTTTACTGT
528241 T
1 T
528242 AATCTTTGGA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.26, C:0.15, G:0.12, T:0.47
Consensus pattern (42 bp):
TTTAGAACTGAATGATATCTATTTCAATCTTGCCTTTACTGT
Found at i:533013 original size:18 final size:18
Alignment explanation
Indices: 532971--533016 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
532961 CAAAAAAGTG
*
532971 ATAAAAAATTCGAGAAAA
1 ATAAAAAATACGAGAAAA
532989 A-AGAAAAATACGAGAAAA
1 ATA-AAAAATACGAGAAAA
533007 ATAAAAAATA
1 ATAAAAAATA
533017 AAAAAATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 1 0.04
18 23 0.92
19 1 0.04
ACGTcount: A:0.72, C:0.04, G:0.11, T:0.13
Consensus pattern (18 bp):
ATAAAAAATACGAGAAAA
Found at i:536293 original size:18 final size:18
Alignment explanation
Indices: 536251--536296 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
536241 CAAAAAAGTG
*
536251 ATAAAAAATTCGAGAAAA
1 ATAAAAAATACGAGAAAA
536269 A-AGAAAAATACGAGAAAA
1 ATA-AAAAATACGAGAAAA
536287 ATAAAAAATA
1 ATAAAAAATA
536297 AAAAAATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 1 0.04
18 23 0.92
19 1 0.04
ACGTcount: A:0.72, C:0.04, G:0.11, T:0.13
Consensus pattern (18 bp):
ATAAAAAATACGAGAAAA
Done.