Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014837.1 Kokia drynarioides strain JFW-HI SEQ_129879, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 138691
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 247 characters in sequence are not A, C, G, or T
Found at i:1549 original size:12 final size:12
Alignment explanation
Indices: 1534--1580 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
1524 CCTCCACCGG
*
1534 CACCTCCACCAC
1 CACCTGCACCAC
*
1546 CACC-GAATCCAC
1 CACCTGCA-CCAC
1558 CACCTGCACCAC
1 CACCTGCACCAC
*
1570 CTCCTGCACCA
1 CACCTGCACCA
1581 GCGCCAGCAC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
11 1 0.03
12 26 0.90
13 2 0.07
ACGTcount: A:0.26, C:0.57, G:0.06, T:0.11
Consensus pattern (12 bp):
CACCTGCACCAC
Found at i:1775 original size:27 final size:27
Alignment explanation
Indices: 1745--1836 Score: 84
Period size: 27 Copynumber: 3.4 Consensus size: 27
1735 NCTCCAGCAC
*
1745 CACCGCCACCACCAAGCCCTCCTCCTG
1 CACCACCACCACCAAGCCCTCCTCCTG
* *
1772 CA-C-CC-CCACC-AGCTCCACCTCCTAAAC
1 CACCACCACCACCAAGC-CCTCCTCCT---G
*
1799 CACCACCACCACCAAGCCCTCCTCCAG
1 CACCACCACCACCAAGCCCTCCTCCTG
1826 CACCACCACCA
1 CACCACCACCA
1837 AAACCACCAC
Statistics
Matches: 52, Mismatches: 5, Indels: 16
0.71 0.07 0.22
Matches are distributed among these distances:
23 3 0.06
24 13 0.25
25 2 0.04
26 1 0.02
27 15 0.29
28 1 0.02
29 2 0.04
30 12 0.23
31 3 0.06
ACGTcount: A:0.25, C:0.60, G:0.07, T:0.09
Consensus pattern (27 bp):
CACCACCACCACCAAGCCCTCCTCCTG
Found at i:1829 original size:24 final size:24
Alignment explanation
Indices: 1750--1837 Score: 79
Period size: 24 Copynumber: 3.4 Consensus size: 24
1740 AGCACCACCG
*
1750 CCACCACCAAGCCCTCCTCCTGCA
1 CCACCACCAAGCCCTCCTCCAGCA
* *
1774 CCCCCACC-AGCTCCACCTCCTAAACCACCA
1 CCACCACCAAG---C-CCTCCT---CCAGCA
1804 CCACCACCAAGCCCTCCTCCAGCA
1 CCACCACCAAGCCCTCCTCCAGCA
1828 CCACCACCAA
1 CCACCACCAA
1838 AACCACCACC
Statistics
Matches: 51, Mismatches: 5, Indels: 16
0.71 0.07 0.22
Matches are distributed among these distances:
23 2 0.04
24 22 0.43
26 1 0.02
27 12 0.24
28 1 0.02
30 11 0.22
31 2 0.04
ACGTcount: A:0.26, C:0.59, G:0.06, T:0.09
Consensus pattern (24 bp):
CCACCACCAAGCCCTCCTCCAGCA
Found at i:10701 original size:20 final size:20
Alignment explanation
Indices: 10678--10722 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
10668 CATTACACTG
* *
10678 TATTTAAAAATATTATATAT
1 TATTCAAAAAAATTATATAT
*
10698 TATTCAAAAAAATTTTATA-
1 TATTCAAAAAAATTATATAT
10717 TATTCA
1 TATTCA
10723 TATTCACCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (20 bp):
TATTCAAAAAAATTATATAT
Found at i:27627 original size:16 final size:17
Alignment explanation
Indices: 27597--27629 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
27587 AAATTTGATC
27597 GAAAATATATCAAAATT
1 GAAAATATATCAAAATT
27614 GAAAATAT-TCAAAATT
1 GAAAATATATCAAAATT
27630 TAATATAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.30
Consensus pattern (17 bp):
GAAAATATATCAAAATT
Found at i:27755 original size:35 final size:34
Alignment explanation
Indices: 27675--27746 Score: 144
Period size: 34 Copynumber: 2.1 Consensus size: 34
27665 AAATTAACCT
27675 TTAATGTCACAAATAAAAGTAAGATCGTAAAAAA
1 TTAATGTCACAAATAAAAGTAAGATCGTAAAAAA
27709 TTAATGTCACAAATAAAAGTAAGATCGTAAAAAA
1 TTAATGTCACAAATAAAAGTAAGATCGTAAAAAA
27743 TTAA
1 TTAA
27747 ATTACACAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.56, C:0.08, G:0.11, T:0.25
Consensus pattern (34 bp):
TTAATGTCACAAATAAAAGTAAGATCGTAAAAAA
Found at i:31747 original size:16 final size:16
Alignment explanation
Indices: 31722--31760 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
31712 AATAATCTAA
*
31722 TTTATATATTAAGAAT
1 TTTATTTATTAAGAAT
*
31738 TTTATTTATTAATAAT
1 TTTATTTATTAAGAAT
31754 TCTTATT
1 T-TTATT
31761 ATGTTTTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 15 0.75
17 5 0.25
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (16 bp):
TTTATTTATTAAGAAT
Found at i:50306 original size:11 final size:11
Alignment explanation
Indices: 50290--50317 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
50280 TATTGCATTC
50290 AATTTATAAAT
1 AATTTATAAAT
50301 AATTTATAAAT
1 AATTTATAAAT
50312 AATTTA
1 AATTTA
50318 AAAAAAAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
AATTTATAAAT
Found at i:56124 original size:22 final size:23
Alignment explanation
Indices: 56082--56127 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
56072 AATCCCAAAT
56082 AAATTAACTCAAATTATATTTTA
1 AAATTAACTCAAATTATATTTTA
*
56105 AAATTCAA-TCAACTTA-ATTTTA
1 AAATT-AACTCAAATTATATTTTA
56127 A
1 A
56128 CTATCTAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 7 0.33
23 12 0.57
24 2 0.10
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (23 bp):
AAATTAACTCAAATTATATTTTA
Found at i:57494 original size:11 final size:12
Alignment explanation
Indices: 57469--57494 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
57459 GGTACTAAGA
57469 GGGGTTAGCAGG
1 GGGGTTAGCAGG
57481 GGGGTTAGCAGG
1 GGGGTTAGCAGG
57493 GG
1 GG
57495 TCGGACCTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.08, G:0.62, T:0.15
Consensus pattern (12 bp):
GGGGTTAGCAGG
Found at i:59756 original size:59 final size:60
Alignment explanation
Indices: 59610--59756 Score: 142
Period size: 59 Copynumber: 2.5 Consensus size: 60
59600 ACTAAATTAG
* * * *
59610 GAAAAAAAAT-TCAATTTAAGTACCAAATTGGGTCCAAAAAAAGTTCAAGTATCAAATTA
1 GAAAAAAAATATCAATTCAAATACCAAATTGGGTCCAAAAAAAGTTCAAGTACCAAATAA
* * * * * *
59669 G-GAAAAAGTATCAAGTTCAGACATCAAATTGGGT-CAAAAAAA-TT-TAGTACCAAATCAA
1 GAAAAAAAATATCAA-TTCAAATACCAAATTGGGTCCAAAAAAAGTTCAAGTACCAAAT-AA
59727 GAAAAAAAATATCAGATTCAAATACCAAAT
1 GAAAAAAAATATCA-ATTCAAATACCAAAT
59757 ATTATACTAA
Statistics
Matches: 68, Mismatches: 15, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
57 9 0.13
58 10 0.15
59 34 0.50
60 15 0.22
ACGTcount: A:0.52, C:0.13, G:0.12, T:0.23
Consensus pattern (60 bp):
GAAAAAAAATATCAATTCAAATACCAAATTGGGTCCAAAAAAAGTTCAAGTACCAAATAA
Found at i:60126 original size:16 final size:16
Alignment explanation
Indices: 60105--60139 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
60095 CTTAAACCCC
60105 ACAATATCCATCGAGT
1 ACAATATCCATCGAGT
60121 ACAATATCCATCGAGT
1 ACAATATCCATCGAGT
60137 ACA
1 ACA
60140 TGTTTTGGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.40, C:0.26, G:0.11, T:0.23
Consensus pattern (16 bp):
ACAATATCCATCGAGT
Found at i:61938 original size:20 final size:20
Alignment explanation
Indices: 61913--61952 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
61903 GGAAAATTTT
*
61913 ATTTTATAACCTTTTCTCAA
1 ATTTTATAACCTTATCTCAA
*
61933 ATTTTATAATCTTATCTCAA
1 ATTTTATAACCTTATCTCAA
61953 GTTCCCAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.00, T:0.50
Consensus pattern (20 bp):
ATTTTATAACCTTATCTCAA
Found at i:64679 original size:17 final size:16
Alignment explanation
Indices: 64654--64687 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
64644 TAAATTAATA
64654 TTTAAAATTTAAATTTT
1 TTTAAAA-TTAAATTTT
*
64671 TTTATAATTAAATTTT
1 TTTAAAATTAAATTTT
64687 T
1 T
64688 AATTAGAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTAAAATTAAATTTT
Found at i:74371 original size:31 final size:27
Alignment explanation
Indices: 74333--74401 Score: 84
Period size: 31 Copynumber: 2.4 Consensus size: 27
74323 TAAATCTCAA
*
74333 AATTATACATGAACTTTGATTTAATGTGC
1 AATTATACATGAACTTTAATTT-A-GTGC
*
74362 AATTGTATACATAAACTTTAATTTAGTGC
1 AA-T-TATACATGAACTTTAATTTAGTGC
74391 AATTATACATG
1 AATTATACATG
74402 TGAAACTCTA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
27 7 0.20
28 1 0.03
29 8 0.23
30 2 0.06
31 17 0.49
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.41
Consensus pattern (27 bp):
AATTATACATGAACTTTAATTTAGTGC
Found at i:74391 original size:29 final size:31
Alignment explanation
Indices: 74336--74394 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
74326 ATCTCAAAAT
* *
74336 TATACATGAACTTTGATTTAATGTGCAATTG
1 TATACATAAACTTTAATTTAATGTGCAATTG
74367 TATACATAAACTTTAATTT-A-GTGCAATT
1 TATACATAAACTTTAATTTAATGTGCAATT
74395 ATACATGTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 8 0.31
30 1 0.04
31 17 0.65
ACGTcount: A:0.36, C:0.10, G:0.12, T:0.42
Consensus pattern (31 bp):
TATACATAAACTTTAATTTAATGTGCAATTG
Found at i:84984 original size:3 final size:3
Alignment explanation
Indices: 84978--85004 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
84968 AGCTTTTATT
84978 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
85005 TTTTATCTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:85109 original size:19 final size:18
Alignment explanation
Indices: 85080--85128 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
85070 CTTTGGCTTA
85080 TATTGTTTTTTCAGTCTTT
1 TATT-TTTTTTCAGTCTTT
**
85099 TGATTTTTTTTTTGTCTTT
1 T-ATTTTTTTTCAGTCTTT
85118 TATTTTATTTT
1 TATTTT-TTTT
85129 TCAACGTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 5 0.19
19 18 0.69
20 3 0.12
ACGTcount: A:0.10, C:0.06, G:0.08, T:0.76
Consensus pattern (18 bp):
TATTTTTTTTCAGTCTTT
Found at i:85122 original size:18 final size:20
Alignment explanation
Indices: 85093--85129 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
85083 TGTTTTTTCA
85093 GTCTTTTGATTTT-TTTTTT
1 GTCTTTTGATTTTATTTTTT
85112 GTCTTTT-ATTTTATTTTT
1 GTCTTTTGATTTTATTTTT
85130 CAACGTAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.08, C:0.05, G:0.08, T:0.78
Consensus pattern (20 bp):
GTCTTTTGATTTTATTTTTT
Found at i:85129 original size:19 final size:19
Alignment explanation
Indices: 85093--85129 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
85083 TGTTTTTTCA
85093 GTCTTTTGATTTTTTTTTT
1 GTCTTTTGATTTTTTTTTT
*
85112 GTCTTTT-ATTTTATTTTT
1 GTCTTTTGATTTTTTTTTT
85130 CAACGTAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.08, C:0.05, G:0.08, T:0.78
Consensus pattern (19 bp):
GTCTTTTGATTTTTTTTTT
Found at i:98368 original size:16 final size:16
Alignment explanation
Indices: 98344--98374 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
98334 TGACACGTAT
*
98344 ATTTTAATAAAAAATA
1 ATTTGAATAAAAAATA
98360 ATTTGAATAAAAAAT
1 ATTTGAATAAAAAAT
98375 GTTTATATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.35
Consensus pattern (16 bp):
ATTTGAATAAAAAATA
Found at i:98922 original size:123 final size:124
Alignment explanation
Indices: 98697--98923 Score: 291
Period size: 123 Copynumber: 1.8 Consensus size: 124
98687 TTCATTCATT
* *
98697 TTTTTCTTCGATAATATCGAATTTTATCATATGAGTTTGATGCTCGAATTTGAATTATTTAAAAT
1 TTTTTCTTCGATAATATCGAATTTTATCATATGAGTTTGATGCTCAAATTTGAATAATTTAAAAT
* * *
98762 TAATAGTTTTCGTCAATTTAAATTTGGGATATATTTTTTGTCAGATTCAAATTGAATCA
66 TAATAGTTTTCATCAATTCAAATTTGGGATACATTTTTTGTCAGATTCAAATTGAATCA
* * * * *
98821 TTTTT-TTCGATAATATCGAGTTTTGTCATATGAGTTTGATGTTCAAATTTGAATAATTT-GATT
1 TTTTTCTTCGATAATATCGAATTTTATCATATGAGTTTGATGCTCAAATTTGAATAATTTAAAAT
* *
98884 TGAACT-GTTTTCATC-GTTCCAAATTTGGGATGCATTTTTT
66 T-AA-TAGTTTTCATCAATT-CAAATTTGGGATACATTTTTT
98924 TTTATGTTGG
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
122 5 0.06
123 77 0.88
124 6 0.07
ACGTcount: A:0.28, C:0.09, G:0.15, T:0.48
Consensus pattern (124 bp):
TTTTTCTTCGATAATATCGAATTTTATCATATGAGTTTGATGCTCAAATTTGAATAATTTAAAAT
TAATAGTTTTCATCAATTCAAATTTGGGATACATTTTTTGTCAGATTCAAATTGAATCA
Found at i:99312 original size:128 final size:127
Alignment explanation
Indices: 98940--99853 Score: 982
Period size: 126 Copynumber: 7.2 Consensus size: 127
98930 TTGGTACTTG
* * * * * * * *
98940 AATTTTAATAATTTGAAATTAATTGTCTTCATTAGTCTAAATTTGGGATATA-TTTTTTATGTTG
1 AATTTGAATCATTTGAAATTAATTGTCTTCGTCATTCTAAGTTTGGGATACATTTTTTTATATTG
* * * * * *
99004 GTTTCAAATTGAATCATTTTGTCTTGATAATATCGAGTTTTGTCATATGTGTTTTATATTCA
66 GTTTCAGATTGAATCATTTTTTCTCGATAATATCGAGTTTTGTCATATGAGTTTGATACTCA
* * *
99066 AATTTGAATCATTTGAAATTAATTTTCTTCGTCATTCTAAGTTTGGAATACACTTTTTTTTTATG
1 AATTTGAATCATTTGAAATTAATTGTCTTCGTCATTCTAAGTTTGGGATACA---TTTTTTTATA
* * *
99131 TTGGTTTC-GAGTTGAATCATTTTTTTCTCAATAATATTGAGTTTTGTCGTATGAGTTTGATACT
63 TTGGTTTCAGA-TTGAATCA-TTTTTTCTCGATAATATCGAGTTTTGTCATATGAGTTTGATACT
*
99195 CG
126 CA
* * * *
99197 AATTTGGATCATTTGAAATTAATTGTCTTTGTCATTCTAAGTTT-GGATTACATTTTTTGACATT
1 AATTTGAATCATTTGAAATTAATTGTCTTCGTCATTCTAAGTTTGGGA-TACATTTTTTTATATT
* * **
99261 GGTTTCAGATTGAATAATTTTTTTCTCGATAATATCGAATTTTG-CTATATGAGTTTGATACTTG
65 GGTTTCAGATTGAATCA-TTTTTTCTCGATAATATCGAGTTTTGTC-ATATGAGTTTGATACTCA
* * * * * * *
99325 AATCTGAAT-ACTTGAAATTAATTGTCTTCATCGTTTTAAGTTTGGGATATATTTTTTTATGTTG
1 AATTTGAATCATTTGAAATTAATTGTCTTCGTCATTCTAAGTTTGGGATACATTTTTTTATATTG
* * * * *
99389 GTTTCGGATTAAATCATTTTTTCTCGATAATATCAAGTTCTGTCATATGAATTTGATACTCA
66 GTTTCAGATTGAATCATTTTTTCTCGATAATATCGAGTTTTGTCATATGAGTTTGATACTCA
* * *
99451 AATTTGAATCATTTGAAATTAATTGTCTTCTTCATTCTAAATTTGGGATGCATTTTTTT-TATGT
1 AATTTGAATCATTTGAAATTAATTGTCTTCGTCATTCTAAGTTTGGGATACATTTTTTTATAT-T
* * * *
99515 CGGTTT-GGAATTGAATCATCTTCTCTCGATAATATCGAGTTTTGTCATATGAGTTTTATACTCA
65 -GGTTTCAG-ATTGAATCATTTTTTCTCGATAATATCGAGTTTTGTCATATGAGTTTGATACTCA
* * * * * *
99579 AATTTGAATAATTTGAAAATAGTTGTCTTCGTCATTCTAAGTTTGGGATACATTTTTTGATCTCG
1 AATTTGAATCATTTGAAATTAATTGTCTTCGTCATTCTAAGTTTGGGATACATTTTTTTATATTG
* * ** *
99644 GATTC-GAATTGAATCA-TTTTTCTCGAGAATATTTAGTTTTGTCATATGAGTTTGATACTCG
66 GTTTCAG-ATTGAATCATTTTTTCTCGATAATATCGAGTTTTGTCATATGAGTTTGATACTCA
* * * *
99705 AATTTGAATCATTTGAAATTAATTGTCTTCTTCAATCTAAGTTTGGGATACATTTTTCTTAAATA
1 AATTTGAATCATTTGAAATTAATTGTCTTCGTCATTCTAAGTTTGGGATACATTTTT-TTATATT
* * * * * *
99770 CGTTTCAGAATGAATCATTTATTTCTCGATAATATTGAGTTTTGTAATATGAATTTAATACTCA
65 GGTTTCAGATTGAATCATTT-TTTCTCGATAATATCGAGTTTTGTCATATGAGTTTGATACTCA
* * * *
99834 GATTTCAATCTTTTAAAATT
1 AATTTGAATCATTTGAAATT
99854 CGAATAATTT
Statistics
Matches: 660, Mismatches: 107, Indels: 39
0.82 0.13 0.05
Matches are distributed among these distances:
126 181 0.27
127 132 0.20
128 180 0.27
129 58 0.09
130 27 0.04
131 82 0.12
ACGTcount: A:0.28, C:0.10, G:0.14, T:0.47
Consensus pattern (127 bp):
AATTTGAATCATTTGAAATTAATTGTCTTCGTCATTCTAAGTTTGGGATACATTTTTTTATATTG
GTTTCAGATTGAATCATTTTTTCTCGATAATATCGAGTTTTGTCATATGAGTTTGATACTCA
Found at i:99468 original size:254 final size:253
Alignment explanation
Indices: 98934--99831 Score: 1031
Period size: 254 Copynumber: 3.5 Consensus size: 253
98924 TTTATGTTGG
* * * * *
98934 TACTTGAATTTTAATAATTTGAAATTAATTGTCTTCATT-AGTCTAAATTTGGGATATATTTTTT
1 TACTCGAATTTGAATCATTTGAAATTAATTGTCTTC-TTCATTCTAAATTTGGGATACATTTTTT
* * * * *
98998 ATGTTGGTTTCAAATTGAATCATTTTGTCTTGATAATATCGAGTTTTGTCATATGTGTTTTATA-
65 ATATTGGTTTCAGATTGAATCATTTTTTCTCGATAATATCGAGTTTTGTCATATGAGTTTTATAC
* * * *
99062 TTCAAATTTGAATCATTTGAAATTAATTTTCTTCGTCATTCTAAGTTTGGAATACACTTTTTTTT
130 TT-AAATTTGAATAATTTGAAATTAATTGTCTTCGTCATTCTAAGTTTGGGAT--A-TATTTTTT
* * *
99127 TATGTTGGTTTC-GAGTTGAATCATTTTTTTCTCAATAATATTGAGTTTTGTCGTATGAGTTTGA
191 TATGTTGGTTTCGGA-TTGAATCA-TTTTTTCTCGATAATATTAAGTTTTGTCATATGAGTTTGA
* *
99191 TACTCGAATTTGGATCATTTGAAATTAATTGTCTT-TGTCATTCTAAGTTT-GGATTACATTTTT
1 TACTCGAATTTGAATCATTTGAAATTAATTGTCTTCT-TCATTCTAAATTTGGGA-TACATTTTT
* * * *
99254 TGACATTGGTTTCAGATTGAATAATTTTTTTCTCGATAATATCGAATTTTG-CTATATGAGTTTG
64 T-ATATTGGTTTCAGATTGAATCA-TTTTTTCTCGATAATATCGAGTTTTGTC-ATATGAGTTTT
* * * * * *
99318 ATACTTGAATCTGAAT-ACTTGAAATTAATTGTCTTCATCGTTTTAAGTTTGGGATATATTTTTT
126 ATACTTAAATTTGAATAATTTGAAATTAATTGTCTTCGTCATTCTAAGTTTGGGATATATTTTTT
* * * *
99382 TATGTTGGTTTCGGATTAAATCATTTTTTCTCGATAATATCAAGTTCTGTCATATGAATTTGA
191 TATGTTGGTTTCGGATTGAATCATTTTTTCTCGATAATATTAAGTTTTGTCATATGAGTTTGA
* * *
99445 TACTCAAATTTGAATCATTTGAAATTAATTGTCTTCTTCATTCTAAATTTGGGATGCATTTTTTT
1 TACTCGAATTTGAATCATTTGAAATTAATTGTCTTCTTCATTCTAAATTTGGGATACATTTTTTA
* * *
99510 TATGTCGGTTT-GGAATTGAATCATCTTCTCTCGATAATATCGAGTTTTGTCATATGAGTTTTAT
66 TAT-T-GGTTTCAG-ATTGAATCATTTTTTCTCGATAATATCGAGTTTTGTCATATGAGTTTTAT
* * * * *
99574 ACTCAAATTTGAATAATTTGAAAATAGTTGTCTTCGTCATTCTAAGTTTGGGATACATTTTTTGA
128 ACTTAAATTTGAATAATTTGAAATTAATTGTCTTCGTCATTCTAAGTTTGGGATATATTTTTTTA
* * * * * *
99639 TCTCGGATTCGAATTGAATCA-TTTTTCTCGAGAATATTTAGTTTTGTCATATGAGTTTGA
193 TGTTGGTTTCGGATTGAATCATTTTTTCTCGATAATATTAAGTTTTGTCATATGAGTTTGA
* *
99699 TACTCGAATTTGAATCATTTGAAATTAATTGTCTTCTTCAATCTAAGTTTGGGATACATTTTTCT
1 TACTCGAATTTGAATCATTTGAAATTAATTGTCTTCTTCATTCTAAATTTGGGATACA-TTTT-T
* ** * * * * *
99764 TAAATACGTTTCAGAATGAATCATTTATTTCTCGATAATATTGAGTTTTGTAATATGAATTTAAT
64 TATATTGGTTTCAGATTGAATCATTT-TTTCTCGATAATATCGAGTTTTGTCATATGAGTTTTAT
99829 ACT
128 ACT
99832 CAGATTTCAA
Statistics
Matches: 541, Mismatches: 81, Indels: 40
0.82 0.12 0.06
Matches are distributed among these distances:
253 2 0.00
254 238 0.44
255 144 0.27
256 11 0.02
257 49 0.09
258 52 0.10
259 43 0.08
260 2 0.00
ACGTcount: A:0.27, C:0.10, G:0.15, T:0.48
Consensus pattern (253 bp):
TACTCGAATTTGAATCATTTGAAATTAATTGTCTTCTTCATTCTAAATTTGGGATACATTTTTTA
TATTGGTTTCAGATTGAATCATTTTTTCTCGATAATATCGAGTTTTGTCATATGAGTTTTATACT
TAAATTTGAATAATTTGAAATTAATTGTCTTCGTCATTCTAAGTTTGGGATATATTTTTTTATGT
TGGTTTCGGATTGAATCATTTTTTCTCGATAATATTAAGTTTTGTCATATGAGTTTGA
Found at i:99539 original size:126 final size:127
Alignment explanation
Indices: 98940--99853 Score: 970
Period size: 128 Copynumber: 7.2 Consensus size: 127
98930 TTGGTACTTG
* * * * *
98940 AATTTTAATAATTTGAAATTAATTGTCTTCATT-AGTCTAAATTTGGGAT--ATATTTTTTATGT
1 AATTTGAATCATTTGAAATTAATTGTCTTC-TTCATTCTAAGTTTGGGATACATTTTTTTTATGT
* * * * *
99002 TGGTTTCAAATTGAATCATTTTGTCTTGATAATATCGAGTTTTGTCATATGTGTTTTATATTCA
65 TGGTTTCGAATTGAATCATTTT-TCTCGATAATATCGAGTTTTGTCATATGAGTTTGATACTCA
* * *
99066 AATTTGAATCATTTGAAATTAATTTTCTTCGTCATTCTAAGTTTGGAATACACTTTTTTTTTATG
1 AATTTGAATCATTTGAAATTAATTGTCTTCTTCATTCTAAGTTTGGGATACA--TTTTTTTTATG
* * * *
99131 TTGGTTTCGAGTTGAATCATTTTTTTCTCAATAATATTGAGTTTTGTCGTATGAGTTTGATACTC
64 TTGGTTTCGAATTGAATCA--TTTTTCTCGATAATATCGAGTTTTGTCATATGAGTTTGATACTC
*
99196 G
127 A
* * **
99197 AATTTGGATCATTTGAAATTAATTGTCTT-TGTCATTCTAAGTTT-GGATTACA-TTTTTTGACA
1 AATTTGAATCATTTGAAATTAATTGTCTTCT-TCATTCTAAGTTTGGGA-TACATTTTTTTTATG
* *
99259 TTGGTTTC-AGATTGAATAATTTTTTTCTCGATAATATCGAATTTTG-CTATATGAGTTTGATAC
64 TTGGTTTCGA-ATTGAATCA--TTTTTCTCGATAATATCGAGTTTTGTC-ATATGAGTTTGATAC
**
99322 TTG
125 TCA
* * * * * *
99325 AATCTGAAT-ACTTGAAATTAATTGTCTTCATCGTTTTAAGTTTGGGATATA-TTTTTTTATGTT
1 AATTTGAATCATTTGAAATTAATTGTCTTCTTCATTCTAAGTTTGGGATACATTTTTTTTATGTT
* * * * *
99388 GGTTTCGGATTAAATCATTTTTTCTCGATAATATCAAGTTCTGTCATATGAATTTGATACTCA
66 GGTTTCGAATTGAATCA-TTTTTCTCGATAATATCGAGTTTTGTCATATGAGTTTGATACTCA
* * *
99451 AATTTGAATCATTTGAAATTAATTGTCTTCTTCATTCTAAATTTGGGATGCATTTTTTTTATGTC
1 AATTTGAATCATTTGAAATTAATTGTCTTCTTCATTCTAAGTTTGGGATACATTTTTTTTATGTT
* * *
99516 GGTTTGGAATTGAATCATCTTCTCTCGATAATATCGAGTTTTGTCATATGAGTTTTATACTCA
66 GGTTTCGAATTGAATCAT-TTTTCTCGATAATATCGAGTTTTGTCATATGAGTTTGATACTCA
* * * * * * *
99579 AATTTGAATAATTTGAAAATAGTTGTCTTCGTCATTCTAAGTTTGGGATACA-TTTTTTGATCTC
1 AATTTGAATCATTTGAAATTAATTGTCTTCTTCATTCTAAGTTTGGGATACATTTTTTTTATGTT
* * ** *
99643 GGATTCGAATTGAATCATTTTTCTCGAGAATATTTAGTTTTGTCATATGAGTTTGATACTCG
66 GGTTTCGAATTGAATCATTTTTCTCGATAATATCGAGTTTTGTCATATGAGTTTGATACTCA
* * ** *
99705 AATTTGAATCATTTGAAATTAATTGTCTTCTTCAATCTAAGTTTGGGATACATTTTTCTTAAATA
1 AATTTGAATCATTTGAAATTAATTGTCTTCTTCATTCTAAGTTTGGGATACATTTTTTTTATGTT
* * * * *
99770 CGTTTCAGAA-TGAATCATTTATTTCTCGATAATATTGAGTTTTGTAATATGAATTTAATACTCA
66 GGTTTC-GAATTGAATCA-TT-TTTCTCGATAATATCGAGTTTTGTCATATGAGTTTGATACTCA
* * * *
99834 GATTTCAATCTTTTAAAATT
1 AATTTGAATCATTTGAAATT
99854 CGAATAATTT
Statistics
Matches: 660, Mismatches: 106, Indels: 41
0.82 0.13 0.05
Matches are distributed among these distances:
125 1 0.00
126 171 0.26
127 137 0.21
128 188 0.28
129 53 0.08
130 29 0.04
131 77 0.12
132 4 0.01
ACGTcount: A:0.28, C:0.10, G:0.14, T:0.47
Consensus pattern (127 bp):
AATTTGAATCATTTGAAATTAATTGTCTTCTTCATTCTAAGTTTGGGATACATTTTTTTTATGTT
GGTTTCGAATTGAATCATTTTTCTCGATAATATCGAGTTTTGTCATATGAGTTTGATACTCA
Found at i:101625 original size:199 final size:199
Alignment explanation
Indices: 101272--102458 Score: 1213
Period size: 199 Copynumber: 5.9 Consensus size: 199
101262 ATATATATAT
***
101272 AAAAGCTCCTTTTAGTAGTTAAGCTAGACAAGGCTTCGATTGCGGGACAAGCAAATGCTTGTACC
1 AAAAGCTCCTTTTAGTAGTTAAGCTAGACAAGGCTTCGATTGCGGGATTCGCAAATGCTTGT-CC
* ** * * ** ** *
101337 -ACACATATATTTGTATCTGACATTTATGCTTGAGTCCGAGTAATGTAAGCT-AAAGTTAAGCAT
65 GATAC--ATATCCGTATCTGACACTCATGCTTGAGTCCGAGTAACATAAGCTCAAA-TCGAGCTT
* * *
101400 TAGCCATTGGCTAATGGTAGCCCCAGAATCTTATCCAGGTGGTTTAAGGTGTGGAGAGGCTCCAA
127 TAGCCATTGCCTAATGGTAACCCCAGAATCTTATCCAGGTGGTTTAAGGTGTGAAGAGGCTCCAA
**
101465 AAGCCTTA
192 TTGCCTTA
* * **
101473 AAAAGCAT-CTTTTAGTAGTTAAGCCAGACAAGGCTTGGATTGTTGGATTCGCAAATGCTTGTCC
1 AAAAGC-TCCTTTTAGTAGTTAAGCTAGACAAGGCTTCGATTGCGGGATTCGCAAATGCTTGTCC
* * * *
101537 GATACATATTCATATCTGATACTCATGTTTGAGTCCGAGTAACATAAGCT-AAAGTCGAGCTTTA
65 GATACATATCCGTATCTGACACTCATGCTTGAGTCCGAGTAACATAAGCTCAAA-TCGAGCTTTA
* * *
101601 GCCATTGCCTAATGGTAACCCCAGAATATTATCTATGTGGTTTAAGGTGTGAAGAGGCTCCAATT
129 GCCATTGCCTAATGGTAACCCCAGAATCTTATCCAGGTGGTTTAAGGTGTGAAGAGGCTCCAATT
101666 GCCTTA
194 GCCTTA
** * * * * * * * * *
101672 AAAAATTCCTTTTAGTACTTAAGCTAGGCCAGGCTTTGATTCCAGGATTTGCAAATGTTTGTCTG
1 AAAAGCTCCTTTTAGTAGTTAAGCTAGACAAGGCTTCGATTGCGGGATTCGCAAATGCTTGTC-C
* * * *
101737 GA-GCATATCCGTATCTGACACTCATGCTTGAGTTCAAATAACATAAGCTCAAATCGAGCTTTAG
65 GATACATATCCGTATCTGACACTCATGCTTGAGTCCGAGTAACATAAGCTCAAATCGAGCTTTAG
* * * * *
101801 CCATTGCCTATTGGTAATCCCTGAATC-T-T--A-----TTCAAGGTGTTAAGAGGCTCCAATTG
130 CCATTGCCTAATGGTAACCCCAGAATCTTATCCAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTG
*
101857 CCTTT
195 CCTTA
* * * * *
101862 AAAAGCTCCTCTTAGTAGTTAAGCCAAACAAGGCTTCGATTGGGGGATTCGTAAATGCTTGTCGG
1 AAAAGCTCCTTTTAGTAGTTAAGCTAGACAAGGCTTCGATTGCGGGATTCGCAAATGC-T-T--G
* * * * *
101927 ATAGGACCGATACATATCCATGTCTGACACTCGTGTTTGAGTCCGAGTAACATAAGCTTAAATCG
62 -T----CCGATACATATCCGTATCTGACACTCATGCTTGAGTCCGAGTAACATAAGCTCAAATCG
101992 AGCTTTAGCCATTGCCTAATGGTAACCCCAGAATCTTAT-CAGGGTGGTTTAAGGTGTGAAGAGG
122 AGCTTTAGCCATTGCCTAATGGTAACCCCAGAATCTTATCCA-GGTGGTTTAAGGTGTGAAGAGG
102056 CTCCAATTGCCTTA
186 CTCCAATTGCCTTA
* * * * *
102070 AAAAGCTCCTTTTAGTAGTTAAGCTAGACAAGGCTTTGATTCCGGGATTTGCCAGTGCTTGTCCG
1 AAAAGCTCCTTTTAGTAGTTAAGCTAGACAAGGCTTCGATTGCGGGATTCGCAAATGCTTGTCCG
** * * * * *
102135 GCACATATCCGTATTTGACACTCATGCCTGACTCTGAGTAACATAAGCTGAAATCGAGCTTTAGC
66 ATACATATCCGTATCTGACACTCATGCTTGAGTCCGAGTAACATAAGCTCAAATCGAGCTTTAGC
* ** * * **
102200 CATTGCTTGCTGGTAGCCCCAAAATCTTATTATAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTG
131 CATTGCCTAATGGTAACCCCAGAATCTTA-TCCAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTG
102265 CCTTA
195 CCTTA
* * * * ** *
102270 AAAACCTGCTTTTAGTAGTTAAG-TGAAACAAGGCTTCGATTGCGAGATTCATAAATGCTTGTCT
1 AAAAGCTCCTTTTAGTAGTTAAGCT-AGACAAGGCTTCGATTGCGGGATTCGCAAATGCTTGTCC
* * *
102334 GATACACATCCGTATCTGACACTCATGTTTGAGTCTGAG-AACATAAGCTCAAATCGAGCTTTAG
65 GATACATATCCGTATCTGACACTCATGCTTGAGTCCGAGTAACATAAGCTCAAATCGAGCTTTAG
* ** * *
102398 CCATCAG-CTAACAGTAGCCCCAGAATCTTATCAGAGGTGGTTTAAGGTGTGAAGAGGCTCC
130 CCAT-TGCCTAATGGTAACCCCAGAATCTTATC-CAGGTGGTTTAAGGTGTGAAGAGGCTCC
102459 TATTTTTACC
Statistics
Matches: 815, Mismatches: 142, Indels: 60
0.80 0.14 0.06
Matches are distributed among these distances:
190 71 0.09
191 1 0.00
192 1 0.00
194 1 0.00
195 2 0.00
197 1 0.00
198 5 0.01
199 465 0.57
200 128 0.16
201 58 0.07
202 2 0.00
203 1 0.00
204 1 0.00
206 1 0.00
207 1 0.00
208 76 0.09
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (199 bp):
AAAAGCTCCTTTTAGTAGTTAAGCTAGACAAGGCTTCGATTGCGGGATTCGCAAATGCTTGTCCG
ATACATATCCGTATCTGACACTCATGCTTGAGTCCGAGTAACATAAGCTCAAATCGAGCTTTAGC
CATTGCCTAATGGTAACCCCAGAATCTTATCCAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTGC
CTTA
Found at i:104446 original size:36 final size:36
Alignment explanation
Indices: 104399--104472 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
104389 CTTTTACGAG
104399 TTAATTACACCAAATATCCTCAAACTATGACTTATA
1 TTAATTACACCAAATATCCTCAAACTATGACTTATA
104435 TTAATTACACCAAATATCCTCAAACTATGACTTATA
1 TTAATTACACCAAATATCCTCAAACTATGACTTATA
104471 TT
1 TT
104473 TTAAATTGGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.41, C:0.22, G:0.03, T:0.35
Consensus pattern (36 bp):
TTAATTACACCAAATATCCTCAAACTATGACTTATA
Found at i:116626 original size:3 final size:3
Alignment explanation
Indices: 116618--116644 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
116608 TATTGGACAA
116618 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
116645 TGAGTTGGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:116752 original size:135 final size:135
Alignment explanation
Indices: 116510--116779 Score: 504
Period size: 135 Copynumber: 2.0 Consensus size: 135
116500 TTACGACACA
* * * *
116510 TGAGTTGGTTCATCAAACGTAACTCCAACATATATCACTATTTGTAGCGTCTTCATTTCTTTTAA
1 TGAGTTGGTGCATCAAACGCAACTCCAACATATATCACTATTTGCAGCCTCTTCATTTCTTTTAA
116575 TTAAAATATTACAAGTTGAATGTTTTAATATTTTATTGGACAAAATAATAATAATAATAATAATA
66 TTAAAATATTACAAGTTGAATGTTTTAATATTTTATTGGACAAAATAATAATAATAATAATAATA
116640 ATAAT
131 ATAAT
116645 TGAGTTGGTGCATCAAACGCAACTCCAACATATATCACTATTTGCAGCCTCTTCATTTCTTTTAA
1 TGAGTTGGTGCATCAAACGCAACTCCAACATATATCACTATTTGCAGCCTCTTCATTTCTTTTAA
116710 TTAAAATATTACAAGTTGAATGTTTTAATATTTTATTGGACAAAATAATAATAATAATAATAATA
66 TTAAAATATTACAAGTTGAATGTTTTAATATTTTATTGGACAAAATAATAATAATAATAATAATA
116775 ATAAT
131 ATAAT
116780 AATAATAATT
Statistics
Matches: 131, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
135 131 1.00
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (135 bp):
TGAGTTGGTGCATCAAACGCAACTCCAACATATATCACTATTTGCAGCCTCTTCATTTCTTTTAA
TTAAAATATTACAAGTTGAATGTTTTAATATTTTATTGGACAAAATAATAATAATAATAATAATA
ATAAT
Found at i:116800 original size:3 final size:3
Alignment explanation
Indices: 116753--116788 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
116743 TATTGGACAA
116753 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
116789 TGTCTTAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:121279 original size:19 final size:20
Alignment explanation
Indices: 121244--121284 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
121234 GACAAGGTAG
*
121244 AAAAAGATATTATTAAA-AT
1 AAAAAGATATTAATAAATAT
121263 AAAAAG-TATTAAATAAATAT
1 AAAAAGATATT-AATAAATAT
121283 AA
1 AA
121285 TGATTTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
18 4 0.21
19 11 0.58
20 4 0.21
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (20 bp):
AAAAAGATATTAATAAATAT
Found at i:129305 original size:17 final size:17
Alignment explanation
Indices: 129263--129308 Score: 67
Period size: 17 Copynumber: 2.7 Consensus size: 17
129253 TCTGCCTCAA
129263 CAAAAATTT-TAAAATT
1 CAAAAATTTATAAAATT
129279 CAAAATATTTATAAAATT
1 CAAAA-ATTTATAAAATT
*
129297 CCAAAATTTATA
1 CAAAAATTTATA
129309 TTTTAAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 5 0.19
17 11 0.41
18 11 0.41
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (17 bp):
CAAAAATTTATAAAATT
Found at i:130277 original size:55 final size:55
Alignment explanation
Indices: 130211--130315 Score: 210
Period size: 55 Copynumber: 1.9 Consensus size: 55
130201 GATCAGTTTA
130211 ATCTAATTTTAAAAATAATATAATTTTTTTGAAACCCAAATAAATTAGTGAACTG
1 ATCTAATTTTAAAAATAATATAATTTTTTTGAAACCCAAATAAATTAGTGAACTG
130266 ATCTAATTTTAAAAATAATATAATTTTTTTGAAACCCAAATAAATTAGTG
1 ATCTAATTTTAAAAATAATATAATTTTTTTGAAACCCAAATAAATTAGTG
130316 TATTCATTGC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 50 1.00
ACGTcount: A:0.46, C:0.09, G:0.07, T:0.39
Consensus pattern (55 bp):
ATCTAATTTTAAAAATAATATAATTTTTTTGAAACCCAAATAAATTAGTGAACTG
Done.