genome.fa.s14839.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014839.1 Kokia drynarioides strain JFW-HI SEQ_129882, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  392975

Tables:   1   

This is table  1  of  1  ( 107 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459--501	16	2.7	16	85	0	50	4	11	2	81	0.93
3273--3305	3	11.0	3	93	0	57	30	0	3	66	1.06
5120--5180	31	1.9	32	90	3	97	37	3	6	52	1.44
7661--7701	14	2.8	15	81	7	57	53	0	4	41	1.22
9117--9176	14	4.3	14	72	14	52	56	6	0	36	1.26
9102--9169	30	2.3	30	92	2	111	60	5	0	33	1.21
9102--9183	30	2.7	30	86	5	94	59	6	0	34	1.22
29522--29565	18	2.4	19	88	11	65	59	0	27	13	1.35
30482--30529	18	2.7	18	74	25	57	58	10	8	22	1.58
33284--33352	20	3.3	22	66	12	54	50	15	2	30	1.59
33283--33405	41	3.0	41	78	4	133	47	14	4	34	1.63
33283--33379	40	2.4	41	85	1	124	49	14	3	32	1.59
51845--51875	12	2.6	12	94	0	53	77	12	0	9	0.99
51940--51989	22	2.3	22	96	3	93	64	24	8	4	1.38
53293--53343	25	2.0	25	100	0	102	39	7	15	37	1.77
54732--54780	23	2.1	23	84	3	62	28	10	20	40	1.85
60740--60775	18	2.0	18	88	0	54	13	19	0	66	1.24
63971--64003	11	3.1	11	82	8	50	66	6	6	21	1.35
64434--64506	23	3.2	22	75	5	65	12	21	24	41	1.88
64449--64497	22	2.3	21	79	10	55	12	20	28	38	1.89
65123--65190	6	11.5	6	74	14	61	39	2	2	54	1.31
65123--65192	18	3.9	18	83	3	88	38	2	2	55	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65123--65190	35	1.9	35	93	0	118	39	2	2	54	1.31
65128--65205	18	4.5	17	82	10	86	39	5	1	53	1.31
68560--68706	23	6.5	21	74	17	100	15	23	21	40	1.91
68632--68671	21	2.0	20	95	5	71	17	17	25	40	1.91
68572--68679	43	2.4	46	83	7	134	16	22	22	38	1.93
70499--70555	29	2.0	29	86	6	80	40	8	3	47	1.52
72708--72744	18	2.0	20	84	10	51	18	0	8	72	1.08
78002--78040	3	13.0	3	100	0	78	33	0	0	66	0.92
79475--79540	29	2.3	27	78	19	71	22	16	12	48	1.79
85947--85982	14	2.6	14	90	0	54	8	22	2	66	1.31
99439--99488	22	2.3	22	86	10	68	60	14	6	20	1.55
99890--99970	29	2.8	31	77	17	77	38	4	4	51	1.45
101704--101756	28	2.0	26	82	10	63	58	7	7	26	1.52
102214--102246	13	2.6	13	90	4	50	54	6	3	36	1.41
110607--110638	2	16.0	2	100	0	64	50	0	0	50	1.00
117720--117774	27	1.9	30	82	10	71	47	7	9	36	1.63
118736--118797	32	1.9	32	93	6	108	46	4	4	43	1.46
119494--119530	12	3.2	12	92	3	58	45	0	8	45	1.32
134077--134563	252	1.9	255	89	3	768	30	11	26	31	1.92
161993--162026	7	5.1	7	89	10	54	88	0	11	0	0.52
162735--163140	216	1.9	216	97	0	776	43	8	21	27	1.81
164536--164568	17	1.9	17	88	11	50	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
164591--164628	18	2.1	19	85	9	53	60	0	5	34	1.19
178425--178461	7	5.1	7	96	3	65	83	0	16	0	0.64
181077--181101	13	1.9	13	100	0	50	20	0	0	80	0.72
181079--181111	17	1.9	17	100	0	66	18	0	0	81	0.68
183185--183209	10	2.5	10	100	0	50	32	0	0	68	0.90
183338--183377	19	2.1	19	100	0	80	15	7	15	62	1.53
186604--186641	19	2.0	19	100	0	76	26	15	15	42	1.87
197844--197893	22	2.2	23	82	10	59	54	0	4	42	1.19
208469--208534	32	2.1	32	97	0	123	39	18	13	28	1.89
208839--208879	18	2.3	18	87	4	57	34	7	4	53	1.50
212815--212873	3	19.7	3	96	0	100	66	3	0	30	1.08
213778--213818	11	3.8	11	78	18	50	17	0	53	29	1.44
213783--213837	25	2.2	25	87	6	76	16	0	54	29	1.42
213773--213810	7	5.6	7	96	3	69	15	0	55	28	1.41
214298--214327	3	10.0	3	100	0	60	66	0	0	33	0.92
221967--221991	5	5.0	5	100	0	50	0	20	0	80	0.72
222156--222187	13	2.5	13	94	0	55	3	6	0	90	0.53
222611--222640	6	5.0	6	100	0	60	83	0	16	0	0.65
223125--223162	21	1.9	20	89	10	60	34	0	2	63	1.09
225198--225257	17	3.6	17	75	6	52	45	11	0	43	1.40
237473--237501	3	9.7	3	100	0	58	68	0	0	31	0.89
241401--241447	13	3.4	13	78	16	58	31	4	2	61	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
249604--249666	32	2.0	32	87	3	92	34	11	14	39	1.81
250278--250322	24	1.9	23	86	4	63	35	4	4	55	1.40
253753--253804	17	3.1	17	86	10	72	71	5	17	5	1.26
256332--256363	10	3.0	11	90	9	57	81	0	0	18	0.70
256334--256363	5	5.8	5	92	7	51	83	0	0	16	0.65
256334--256363	16	1.9	16	93	6	53	83	0	0	16	0.65
259177--259235	29	2.0	30	83	9	77	47	13	8	30	1.73
264854--264941	44	2.0	44	97	0	167	28	29	19	22	1.98
284722--285440	243	3.0	241	86	4	934	38	12	9	38	1.77
290472--290503	11	2.8	11	95	4	55	68	3	0	28	1.04
297567--297626	21	2.8	22	75	12	54	31	11	23	33	1.91
298660--298695	14	2.4	15	90	9	56	36	0	5	58	1.22
302539--302598	33	1.9	32	83	12	81	55	3	1	40	1.27
309246--309327	29	2.7	33	85	14	115	48	0	25	25	1.51
310318--310352	18	1.9	18	100	0	70	42	17	5	34	1.73
310825--310889	21	3.1	21	71	8	60	38	1	3	56	1.24
310811--310935	42	2.8	44	80	10	148	34	3	4	58	1.33
312678--312738	10	6.7	9	73	17	54	70	1	1	26	1.06
312678--312800	9	13.4	9	70	20	69	66	1	4	27	1.19
312692--312758	19	3.4	19	76	17	66	64	2	0	32	1.09
312982--313018	19	1.9	19	88	0	56	24	0	10	64	1.25
313274--313471	104	1.9	103	81	7	240	47	8	9	34	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
325627--325670	23	2.0	23	91	8	74	27	0	0	72	0.85
326644--326686	18	2.4	18	80	7	52	51	0	2	46	1.13
329801--329844	23	2.0	23	91	8	74	27	0	0	72	0.85
330818--330860	18	2.4	18	80	7	52	51	0	2	46	1.13
331752--331818	33	1.9	36	88	8	104	58	4	29	7	1.46
332712--332848	23	6.0	23	92	0	211	13	17	21	47	1.82
332684--332873	23	8.3	23	85	2	206	12	21	21	45	1.83
334605--334664	29	2.0	31	84	12	81	30	13	1	55	1.48
335323--335429	54	2.0	54	96	0	196	46	14	7	31	1.72
338453--338490	17	2.2	17	100	0	76	23	31	0	44	1.54
368259--368297	9	4.1	9	83	9	51	76	0	0	23	0.78
369752--369802	17	3.0	17	85	5	59	43	0	0	56	0.99
370311--370350	21	1.9	21	90	10	64	50	0	0	50	1.00
370311--370356	21	2.2	20	84	7	56	50	0	0	50	1.00
375532--375569	14	2.7	14	95	0	67	7	21	21	50	1.74
382322--382351	15	2.0	15	100	0	60	26	6	6	60	1.47
391610--391638	13	2.1	14	93	6	51	27	0	3	68	1.05
391905--391949	14	3.1	14	78	12	54	46	2	8	42	1.47
391900--391948	16	3.1	16	77	14	57	48	2	8	40	1.44

Tables:   1

The End!