Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001484.1 Kokia drynarioides strain JFW-HI SEQ_113019, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 613

Length: 1022
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.32


Found at i:603 original size:46 final size:45

Alignment explanation


    Indices: 535--625  Score: 164
    Period size: 46  Copynumber: 2.0  Consensus size: 45

        525 AAAATATTGT

                             *                            
        535 AGATTTGGCCAAGGGCTGTAGAAGAATGAGAAAACTTGGATGTTGA
          1 AGATTTGGCCAAGGGCTCTAGAAGAATGAGAAAAC-TGGATGTTGA

                                                         
        581 AGATTTGGCCAAGGGCTCTAGAAGAATGAGAAAACTGGATGTTGA
          1 AGATTTGGCCAAGGGCTCTAGAAGAATGAGAAAACTGGATGTTGA

        626 CTAAAGTTGA


Statistics
Matches: 44,  Mismatches: 1, Indels: 1
        0.96            0.02        0.02

Matches are distributed among these distances:
  45   10  0.23
  46   34  0.77

ACGTcount: A:0.35, C:0.10, G:0.32, T:0.23


Consensus pattern (45 bp):   
AGATTTGGCCAAGGGCTCTAGAAGAATGAGAAAACTGGATGTTGA
Done.