Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014844.1 Kokia drynarioides strain JFW-HI SEQ_129887, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6925
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.36


Found at i:4894 original size:33 final size:35

Alignment explanation


    Indices: 4829--4899  Score: 101
    Period size: 37  Copynumber: 2.0  Consensus size: 35

       4819 TTTTTTATCA

                                             *   
       4829 ATTTACGTAAATGATCTAAATGATTTAAAAAATTATT
          1 ATTTACGTAAATGATCT--ATGATTTAAAAAATAATT

                                               
       4866 ATTTACGTAAATGATCT-TG-TTTAAAAAATAATT
          1 ATTTACGTAAATGATCTATGATTTAAAAAATAATT

             
       4899 A
          1 A

       4900 CTTAAATGAT


Statistics
Matches: 33,  Mismatches: 1, Indels: 4
        0.87            0.03        0.11

Matches are distributed among these distances:
  33   14  0.42
  34    2  0.06
  37   17  0.52

ACGTcount: A:0.45, C:0.06, G:0.08, T:0.41


Consensus pattern (35 bp):   
ATTTACGTAAATGATCTATGATTTAAAAAATAATT

Found at i:6157 original size:51 final size:52

Alignment explanation


    Indices: 6027--6166  Score: 148
    Period size: 51  Copynumber: 2.8  Consensus size: 52

       6017 CTTGGTATAA

                           *                                *     
       6027 TAACAAATTTAACCCTCAA-AGTT--CACATATTCTATCAATTTGATCTTGATT
          1 TAACAAATTTAACCCACAACA-TTAACACAT-TTCTATCAATTTGATCATGATT

                            *                          *        
       6078 TAACAAATTTAACCCATAACATTAACACATTTC-ATCAATTTGGTCATGATT
          1 TAACAAATTTAACCCACAACATTAACACATTTCTATCAATTTGATCATGATT

                 *              *   *               
       6129 TAACATATTTAA-CCAGCAATATTTACACA-TTCTATCAA
          1 TAACAAATTTAACCCA-CAACATTAACACATTTCTATCAA

       6167 CATTTACGCA


Statistics
Matches: 76,  Mismatches: 8, Indels: 10
        0.81            0.09        0.11

Matches are distributed among these distances:
  50    6  0.08
  51   61  0.80
  52    4  0.05
  53    5  0.07

ACGTcount: A:0.39, C:0.20, G:0.05, T:0.36


Consensus pattern (52 bp):   
TAACAAATTTAACCCACAACATTAACACATTTCTATCAATTTGATCATGATT
Done.