Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014846.1 Kokia drynarioides strain JFW-HI SEQ_129889, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9175
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.32

Warning! 48 characters in sequence are not A, C, G, or T


Found at i:3409 original size:29 final size:30

Alignment explanation


    Indices: 3353--3414  Score: 88
    Period size: 30  Copynumber: 2.1  Consensus size: 30

       3343 TGGGGGTGAG

                 *  *                     
       3353 ATGGAGAGGAGTAAAAATTTTAGGGGAAAA
          1 ATGGAAAGCAGTAAAAATTTTAGGGGAAAA

                            *        *    
       3383 ATGGAAAGCAGTAAAAGTTTTAGGGAAAAA
          1 ATGGAAAGCAGTAAAAATTTTAGGGGAAAA

              
       3413 AT
          1 AT

       3415 AAAAAGTTTT


Statistics
Matches: 28,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  30   28  1.00

ACGTcount: A:0.48, C:0.02, G:0.29, T:0.21


Consensus pattern (30 bp):   
ATGGAAAGCAGTAAAAATTTTAGGGGAAAA

Found at i:4781 original size:27 final size:27

Alignment explanation


    Indices: 4718--4781  Score: 65
    Period size: 27  Copynumber: 2.3  Consensus size: 27

       4708 ATCAAATTGC

                                 * ** * 
       4718 TAAAAGATAATATCTAATAATTTTTTGT
          1 TAAAA-ATAATATCTAATAATATCCTAT

            *   *                      
       4746 GAAAGATAATATCTAATAATATCCTAT
          1 TAAAAATAATATCTAATAATATCCTAT

                     
       4773 TAAAAATAA
          1 TAAAAATAA

       4782 AATTGTTAAA


Statistics
Matches: 28,  Mismatches: 8, Indels: 1
        0.76            0.22        0.03

Matches are distributed among these distances:
  27   25  0.89
  28    3  0.11

ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38


Consensus pattern (27 bp):   
TAAAAATAATATCTAATAATATCCTAT
Done.