Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014851.1 Kokia drynarioides strain JFW-HI SEQ_129894, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 317943
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33

Warning! 641 characters in sequence are not A, C, G, or T


File 2 of 2

Found at i:315275 original size:108 final size:103

Alignment explanation


    Indices: 315073--315281  Score: 337
    Period size: 108  Copynumber: 2.0  Consensus size: 103

     315063 CAAAAGCAAT

                                                            *                
     315073 AGGAGACTACATTTTTACTTTGATAGTTTTAGGATTATTTTGAAAGACGTTTTTTATGTAACTAA
          1 AGGAGACTACATTTTTACTTTGATAGTTTTAGGATTATTTTGAAAGACATTTTTTATGTAACTAA

                       *                          
     315138 TTTAGGAGGAATTTAATTTTAGTTGCGTGTTTATTTTA
         66 TTTAGGAGGAACTTAATTTTAGTTGCGTGTTTATTTTA

                      *                                                     *
     315176 AGGAGACGTATATTTTTACTTTGATAGTTTTAGGATGATTATTTTGAAAGACATTTTTTATGTAC
          1 AGGAGAC-TACATTTTTACTTTGATAGTTTTA-G--GATTATTTTGAAAGACATTTTTTATGTAA

                                                     
     315241 CTAATTTTAGGAGGAACTTAATTTTAGTTGCGTGTTTATTT
         62 CTAA-TTTAGGAGGAACTTAATTTTAGTTGCGTGTTTATTT

     315282 CAAGATGTTT


Statistics
Matches: 97,  Mismatches: 4, Indels: 5
        0.92            0.04        0.05

Matches are distributed among these distances:
 103    7  0.07
 104   23  0.24
 105    1  0.01
 107   31  0.32
 108   35  0.36

ACGTcount: A:0.28, C:0.06, G:0.19, T:0.47


Consensus pattern (103 bp):   
AGGAGACTACATTTTTACTTTGATAGTTTTAGGATTATTTTGAAAGACATTTTTTATGTAACTAA
TTTAGGAGGAACTTAATTTTAGTTGCGTGTTTATTTTA

Done.