genome.fa.s14860.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014860.1 Kokia drynarioides strain JFW-HI SEQ_129903, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  177976

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11925--11988	31	2.1	31	90	0	101	35	10	10	42	1.75
16697--16801	50	2.1	50	83	0	129	17	10	31	40	1.83
19424--19473	23	2.2	23	85	3	66	42	16	2	40	1.59
21002--21035	17	1.9	18	88	5	52	20	11	0	67	1.21
21090--21208	57	2.1	57	95	1	213	38	6	11	42	1.68
23805--23937	29	4.1	32	81	13	164	32	4	11	51	1.57
43225--43251	6	4.5	6	100	0	54	0	85	0	14	0.61
56292--56332	21	1.9	21	90	5	64	36	0	0	63	0.95
65653--65688	4	9.0	4	100	0	72	25	0	25	50	1.50
66573--66612	17	2.4	17	87	8	55	32	0	2	65	1.06
68457--68510	27	2.0	28	81	3	65	62	0	1	35	1.06
68615--68719	51	2.1	51	94	0	183	26	23	17	32	1.96
68887--69040	56	2.7	56	86	2	218	41	12	20	25	1.88
70955--70985	14	2.2	14	94	0	53	0	9	0	87	0.50
87815--87874	18	3.5	17	75	22	54	31	3	3	61	1.28
94796--94921	59	2.1	61	86	8	179	37	8	16	37	1.80
95768--95880	56	2.0	56	100	0	226	27	14	19	38	1.90
96442--96528	46	1.9	45	92	2	147	55	4	4	35	1.41
96504--96577	15	5.1	15	66	20	50	59	0	0	40	0.97
96931--96996	30	2.2	29	81	10	78	46	10	6	36	1.63
105224--105280	16	3.2	17	78	14	53	70	1	0	28	0.98
108697--108810	57	2.0	57	100	0	228	31	14	22	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118139--118179	21	2.0	21	85	0	55	9	12	12	65	1.46
132722--132760	21	1.9	20	84	5	51	51	0	10	38	1.36
140141--140177	16	2.3	16	90	0	56	0	24	13	62	1.31
146702--146728	8	3.4	8	100	0	54	44	0	0	55	0.99
147413--147439	2	13.5	2	100	0	54	48	0	0	51	1.00
156343--156386	22	2.0	24	86	13	67	54	2	0	43	1.12
163004--163042	20	2.0	20	85	10	53	41	0	12	46	1.42
164207--164240	18	1.9	18	88	5	52	55	0	5	38	1.24
167467--168051	196	3.0	188	80	12	720	26	15	13	43	1.85
167666--168051	206	1.9	193	84	8	508	26	15	14	43	1.85
167318--168049	388	1.9	386	92	2	1234	26	16	13	43	1.85
170935--171032	46	2.1	46	94	0	169	34	11	18	35	1.86
176604--176748	29	4.9	30	67	22	110	33	3	28	33	1.74
176607--176758	30	5.2	31	67	21	103	36	3	26	33	1.73
176604--176795	59	3.3	59	81	2	246	35	3	26	34	1.74
176778--176912	29	4.6	29	86	4	150	40	1	22	34	1.64
177921--177975	19	2.9	19	81	8	67	43	1	0	54	1.10

Tables:   1

The End!