genome.fa.s14863.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014863.1 Kokia drynarioides strain JFW-HI SEQ_129906, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  219092

Tables:   1   

This is table  1  of  1  ( 93 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5018--5077	17	3.4	17	73	15	50	28	0	10	61	1.28
7273--7339	28	2.4	28	87	0	98	49	7	11	31	1.67
17957--17988	16	2.0	16	100	0	64	25	12	25	37	1.91
26162--26203	22	2.0	22	86	13	63	54	0	0	45	0.99
26165--26198	16	2.2	15	89	5	50	55	0	0	44	0.99
45557--45605	22	2.3	20	80	19	55	61	2	36	0	1.08
46973--47011	21	1.9	21	89	5	62	25	17	15	41	1.89
50769--50831	29	2.1	30	85	2	83	39	1	14	44	1.55
52964--53004	18	2.3	18	95	0	73	26	21	26	24	2.00
53725--53765	21	2.0	21	85	0	55	31	12	17	39	1.86
53730--53777	21	2.3	21	81	0	51	33	12	18	35	1.89
55509--55564	29	1.9	29	92	0	94	42	17	3	35	1.67
56537--56578	16	2.7	15	79	17	50	61	7	9	21	1.50
65878--66496	99	6.3	98	74	6	380	35	16	30	17	1.92
65876--66514	50	12.9	49	72	10	274	35	16	29	17	1.93
65889--66405	248	2.1	248	84	3	666	35	17	29	18	1.93
67775--67812	18	2.2	18	85	4	51	73	5	5	15	1.19
75346--75469	61	2.0	62	81	4	144	44	11	3	41	1.56
77359--77389	15	2.1	15	93	0	53	22	3	45	29	1.68
77451--77505	13	4.2	13	85	0	65	43	1	16	38	1.58
83295--83370	21	3.6	21	83	3	91	27	28	7	35	1.85
85598--85626	15	1.9	15	100	0	58	0	20	3	75	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86282--86318	3	12.3	3	94	0	65	35	2	0	62	1.10
90612--90668	21	2.7	22	75	8	64	28	29	12	29	1.93
92419--92634	112	1.9	111	88	0	324	31	17	23	28	1.97
92862--93378	258	2.0	258	99	0	1016	26	10	18	44	1.82
95114--95175	28	2.2	28	94	0	106	29	8	30	32	1.86
95243--95641	29	13.7	29	71	11	206	39	2	24	33	1.70
95272--95644	30	12.7	30	71	10	204	39	2	23	34	1.68
95216--95654	59	7.5	59	77	7	353	39	2	24	33	1.70
102712--102745	2	17.0	2	100	0	68	50	0	0	50	1.00
112036--112089	23	2.2	25	83	6	67	12	12	3	70	1.30
112682--112771	45	2.0	45	95	4	164	21	14	33	31	1.93
122527--122603	3	26.0	3	76	7	59	5	0	22	72	1.04
122486--122538	20	2.6	20	79	8	54	9	5	18	66	1.41
122520--122647	12	11.1	12	76	8	104	6	2	21	69	1.22
122520--122605	23	3.8	23	83	7	104	4	0	22	73	1.02
122528--122648	56	2.2	56	84	3	154	6	2	20	70	1.22
122557--122635	32	2.4	31	85	10	88	5	3	20	70	1.22
124184--124304	30	4.1	29	84	8	129	35	21	3	39	1.70
124204--124304	30	3.4	30	89	4	134	37	21	1	38	1.65
124204--124319	60	1.9	59	81	5	135	34	23	3	38	1.72
124192--124402	30	7.1	29	75	12	117	32	22	5	39	1.78
129920--130110	30	6.5	30	80	7	212	40	25	1	32	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129907--130110	59	3.5	57	81	8	230	39	25	1	32	1.67
129920--130101	89	2.0	89	86	4	251	42	25	1	30	1.65
139305--139768	39	11.9	39	66	8	201	24	30	18	26	1.98
139317--139824	78	6.5	78	83	4	560	23	30	19	26	1.98
139305--139829	39	13.4	40	67	13	132	24	30	19	26	1.98
141713--141910	30	6.6	30	81	5	195	36	24	2	36	1.69
141713--141910	61	3.3	59	79	8	195	36	24	2	36	1.69
147895--148151	127	2.0	127	96	0	478	33	21	18	27	1.96
150449--150554	39	2.8	38	77	8	108	28	28	21	21	1.99
150491--150620	66	2.0	66	87	3	190	33	23	22	21	1.98
150557--151534	77	12.7	77	86	4	1181	32	23	17	26	1.96
150449--151546	231	4.8	231	84	5	1340	32	23	17	26	1.97
151461--151585	38	3.2	38	72	14	103	36	24	16	24	1.94
153037--153180	30	4.9	29	78	7	130	34	22	4	38	1.76
153033--153180	59	2.5	59	81	6	158	33	22	4	39	1.75
153046--153201	29	5.3	29	77	9	129	32	23	5	37	1.79
153046--153212	59	2.8	58	77	7	140	31	24	5	37	1.80
154378--154453	35	2.1	36	92	2	127	21	19	27	31	1.97
158196--158235	20	2.0	20	85	9	55	47	10	5	37	1.59
166636--166840	101	2.0	101	92	0	338	39	17	18	25	1.92
171265--171366	32	3.2	32	64	8	91	38	16	3	41	1.67
171261--171398	63	2.2	63	100	0	276	42	17	2	36	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171297--171397	31	3.2	31	64	8	87	46	15	1	35	1.58
171289--171427	63	2.2	63	88	1	199	43	17	1	36	1.59
171476--171524	23	2.1	23	84	3	62	63	6	0	30	1.19
171957--172023	35	1.9	35	100	0	134	62	2	19	14	1.44
173822--173972	10	15.2	10	70	12	80	62	1	3	31	1.25
173937--174005	29	2.3	30	82	9	88	62	4	4	28	1.34
174900--174940	18	2.2	19	86	4	57	36	12	12	39	1.80
175016--175145	70	1.9	67	88	4	197	40	13	13	33	1.82
177814--178131	43	7.4	42	91	3	422	33	10	22	34	1.88
181345--181577	116	2.0	116	99	0	457	29	14	20	35	1.92
184755--184834	39	2.1	39	100	0	160	48	15	13	22	1.79
186825--186938	40	2.8	40	90	0	183	31	17	25	25	1.97
188331--188430	36	2.8	36	89	0	155	38	15	25	22	1.92
189092--189143	21	2.5	21	83	0	59	26	19	23	30	1.98
189430--189557	40	3.2	40	77	10	136	31	14	24	29	1.95
193192--193242	6	8.5	6	91	0	75	47	0	31	21	1.51
197769--197895	59	2.2	56	76	17	125	63	3	6	26	1.33
197818--197882	24	2.6	24	80	11	69	63	1	7	27	1.31
197843--197902	29	2.2	26	82	8	66	68	0	8	23	1.16
198140--198314	63	2.9	61	81	4	174	25	14	10	50	1.74
198520--198655	29	4.5	31	71	13	106	50	10	12	27	1.72
198819--198847	15	1.9	15	100	0	58	31	13	34	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
200916--200940	3	8.3	3	100	0	50	64	0	36	0	0.94
203645--203678	17	2.0	17	88	11	52	41	0	11	47	1.40
209131--209187	30	1.9	30	96	0	105	35	22	12	29	1.91
209357--209405	18	2.7	18	77	0	53	12	48	16	22	1.79
218881--218963	41	2.0	41	100	0	166	27	31	4	36	1.78

Tables:   1

The End!