genome.fa.s14865.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014865.1 Kokia drynarioides strain JFW-HI SEQ_129908, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  238142

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88--113	2	13.0	2	100	0	52	50	0	0	50	1.00
7667--7877	102	2.1	102	99	0	415	34	19	13	32	1.91
21742--21785	22	2.1	20	83	8	52	38	0	6	54	1.27
26249--26378	35	3.7	35	93	1	206	36	13	13	36	1.84
28205--28230	2	13.0	2	100	0	52	50	0	0	50	1.00
36845--36892	25	1.9	25	83	8	62	52	2	2	43	1.24
38566--38590	7	3.6	7	100	0	50	88	0	0	12	0.53
43032--43110	32	2.4	34	93	6	135	34	3	2	59	1.29
43054--43105	16	3.3	15	69	10	50	38	1	3	55	1.29
43464--43510	22	2.1	22	84	7	60	46	4	17	31	1.67
61667--61705	6	6.7	6	85	5	53	51	2	0	46	1.14
61653--61697	17	2.6	18	82	3	56	40	4	2	53	1.33
63611--63746	30	4.6	30	80	8	138	37	27	2	32	1.72
63611--63748	59	2.3	57	81	12	154	36	26	2	33	1.72
63638--63846	89	2.3	88	79	11	203	33	25	4	35	1.76
66050--66113	19	3.3	19	69	26	53	57	1	3	37	1.24
66035--66113	40	2.0	40	83	11	103	55	2	3	37	1.31
66051--66147	42	2.4	40	77	17	101	58	1	3	37	1.20
67087--67126	18	2.1	20	86	9	57	27	20	5	47	1.70
72438--72587	62	2.6	55	85	11	203	47	2	0	50	1.15
73161--73271	58	1.9	58	92	0	186	25	18	20	35	1.96
73245--73413	39	4.3	39	72	7	153	28	16	22	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73323--73514	39	4.8	41	72	8	144	28	17	21	32	1.96
73245--73480	80	3.0	80	84	2	289	28	17	21	32	1.96
73244--73511	80	3.4	80	83	3	283	29	16	20	33	1.95
78143--78280	67	2.1	65	89	5	208	50	4	0	44	1.21
78143--78307	67	2.6	63	84	10	205	52	3	0	43	1.18
78285--78319	3	11.3	3	93	6	61	68	0	0	31	0.90
78639--78694	21	2.8	20	81	5	67	64	0	3	32	1.11
78818--78857	18	2.1	18	86	9	53	55	7	2	35	1.42
82324--82484	78	2.1	78	96	0	295	29	25	29	16	1.96
88691--88716	5	5.2	5	100	0	52	0	0	19	80	0.71
89646--89671	2	13.0	2	100	0	52	50	0	0	50	1.00
92452--92491	3	13.3	3	94	0	71	0	30	0	70	0.88
96468--96497	5	6.0	5	92	0	51	23	20	36	20	1.95
111872--111904	3	11.3	3	93	6	59	69	0	0	30	0.88
120891--121009	63	1.9	63	82	3	150	32	33	9	24	1.87
122968--123022	29	2.0	28	85	7	76	54	7	12	25	1.63
124613--124770	86	1.8	86	93	0	271	37	20	11	31	1.88
126836--126875	19	2.2	18	86	4	53	32	5	2	60	1.32
127254--127301	21	2.2	22	85	10	64	37	10	10	41	1.74
128293--128350	25	2.4	24	83	16	75	37	3	5	53	1.40
128859--128900	21	2.0	22	85	4	59	73	0	11	14	1.09
132043--132099	20	2.9	21	75	17	59	40	1	1	56	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132354--132389	2	18.0	2	100	0	72	50	0	0	50	1.00
132389--132423	17	2.1	16	94	5	61	71	0	0	28	0.86
133202--133251	19	2.6	19	72	12	57	60	0	2	38	1.09
133393--133432	18	2.2	18	86	13	55	72	2	2	22	1.09
136675--136715	16	2.6	16	78	21	50	4	19	0	75	0.98
162182--162207	12	2.2	12	100	0	52	23	15	26	34	1.94
163016--163054	14	2.8	14	80	0	51	84	0	12	2	0.72
174931--174956	12	2.2	12	100	0	52	69	0	0	30	0.89
174932--175019	41	2.1	43	89	4	135	64	7	2	25	1.32
175667--175712	24	2.0	23	86	4	65	65	0	2	32	1.05
178101--178163	24	2.6	24	89	0	99	23	14	11	50	1.74
180077--180127	24	2.1	24	92	0	84	25	11	7	54	1.63
180077--180139	24	2.6	24	87	5	74	28	14	7	49	1.71
184535--184576	9	4.7	9	79	8	50	71	0	26	2	0.98
184848--184902	24	2.2	25	87	3	76	18	0	7	74	1.04
184951--184994	21	2.2	20	91	4	70	31	0	11	56	1.35
186926--187025	43	2.3	43	87	3	139	31	15	13	41	1.84
188392--188447	21	2.7	21	75	5	60	41	32	7	19	1.79
188281--188508	112	2.0	112	88	1	341	40	27	10	21	1.86
190971--191044	24	3.1	24	86	0	103	18	13	21	45	1.84
192128--192192	29	2.2	31	86	5	89	47	1	10	40	1.48
194837--194884	23	2.0	24	84	8	62	56	8	10	25	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195614--195638	2	12.5	2	100	0	50	48	0	0	52	1.00
201001--201031	15	2.1	15	93	0	53	41	12	6	38	1.69
204601--204640	16	2.5	16	80	12	55	40	2	12	45	1.56
204995--205040	15	2.9	17	78	15	55	41	0	13	45	1.43
216802--216846	23	2.0	23	82	8	56	17	24	8	48	1.75
217787--218058	135	2.0	135	99	0	535	26	18	14	40	1.90
219134--219192	31	2.0	30	83	6	75	33	5	13	47	1.65
222784--222820	18	2.1	18	100	0	74	56	10	10	21	1.64
225263--225319	29	2.0	29	83	13	73	33	28	0	38	1.57
229430--229506	34	2.2	34	93	2	127	22	6	23	48	1.74
234898--234961	27	2.4	26	89	2	92	51	6	1	40	1.36
237781--237902	62	2.0	63	98	1	237	39	16	25	18	1.91
237880--237925	23	2.0	23	91	4	76	43	19	26	10	1.84

Tables:   1

The End!