genome.fa.s14866.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014866.1 Kokia drynarioides strain JFW-HI SEQ_129909, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  271135

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16249--16283	14	2.5	14	90	0	52	62	11	5	20	1.48
23014--23057	5	8.2	5	80	14	52	36	0	4	59	1.18
31303--31335	2	16.5	2	93	0	57	48	3	48	0	1.17
31576--31640	26	2.5	26	94	2	112	16	32	7	43	1.77
32417--32475	11	5.5	11	71	4	57	27	1	0	71	0.96
32434--32483	10	4.6	11	80	12	50	30	2	0	68	1.01
33519--33578	20	2.9	20	95	5	102	60	0	38	1	1.07
34700--35062	30	12.3	30	84	5	420	34	28	3	32	1.74
34700--35062	59	6.2	60	85	6	440	34	28	3	32	1.74
37269--37338	31	2.3	30	76	11	72	40	2	2	54	1.30
38401--38431	2	15.5	2	93	0	53	48	0	48	3	1.17
40498--40542	12	3.8	12	79	8	56	24	15	20	40	1.91
43072--43126	26	2.1	26	100	0	110	10	10	30	47	1.73
43206--43252	21	2.1	22	88	11	69	31	0	2	65	1.04
44999--45041	18	2.4	18	88	7	61	53	0	0	46	1.00
47743--47785	12	3.7	12	84	6	61	25	2	6	65	1.30
48871--48926	23	2.5	22	86	8	78	10	21	10	57	1.63
55952--56150	59	3.4	59	85	8	246	33	2	25	39	1.67
55947--56150	30	6.9	29	86	6	243	32	1	25	39	1.67
56804--56858	28	2.0	28	100	0	110	10	29	21	38	1.88
60415--60601	97	1.9	98	82	5	236	40	13	17	29	1.87
60936--61033	30	3.3	30	73	20	96	36	5	27	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60859--61298	58	7.5	59	79	6	394	35	4	26	34	1.75
60892--61298	59	6.9	57	80	9	329	36	3	25	34	1.75
60982--61444	29	16.0	29	69	14	183	36	2	24	36	1.69
61121--61348	60	4.0	57	81	5	176	35	3	25	35	1.72
63010--63051	13	3.2	13	75	18	50	14	9	21	54	1.68
63010--63063	15	3.9	14	75	7	56	16	9	22	51	1.72
63067--63113	23	2.0	23	92	8	78	53	2	0	44	1.12
63081--63125	17	2.6	17	92	0	72	55	2	0	42	1.12
63839--63880	21	1.9	23	85	9	61	0	19	19	61	1.34
64133--64180	17	2.7	18	84	9	55	45	4	6	43	1.48
64133--64180	18	2.7	18	83	3	62	45	4	6	43	1.48
69249--69301	26	2.1	25	82	6	63	26	7	22	43	1.80
69433--69478	19	2.3	20	82	17	60	26	0	23	50	1.50
69548--69715	43	3.9	43	76	7	153	30	16	24	28	1.97
70273--70307	16	2.1	17	89	5	54	37	0	0	62	0.95
72709--72743	18	2.0	17	88	5	52	37	28	0	34	1.58
80325--80383	31	1.9	31	85	0	82	40	11	11	35	1.79
81787--81811	7	3.6	7	100	0	50	32	0	0	68	0.90
82934--82979	20	2.3	20	100	0	92	39	15	0	45	1.46
83839--83976	31	4.5	31	70	12	115	45	12	15	26	1.82
83784--83976	90	2.1	90	83	1	253	45	12	16	25	1.83
84187--84428	56	4.3	55	79	3	241	42	22	12	22	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101812--101852	7	5.6	7	97	2	64	82	4	12	0	0.81
101956--102013	26	2.2	27	81	12	75	44	3	0	51	1.18
103258--103301	21	2.1	21	86	0	61	40	6	18	34	1.77
103266--103312	21	2.2	21	88	0	67	42	4	17	36	1.68
113679--113837	78	2.0	78	93	0	273	46	5	10	37	1.61
113789--113837	23	2.1	24	88	3	73	55	8	4	32	1.48
115033--115060	2	14.0	2	100	0	56	0	50	0	50	1.00
122341--122426	40	2.2	40	82	4	102	24	15	18	41	1.89
131148--131240	27	3.4	28	82	4	109	58	13	8	19	1.62
143050--143101	25	2.1	25	96	0	95	23	38	0	38	1.55
145276--145316	19	2.2	19	91	8	66	41	4	9	43	1.59
149391--149431	19	2.2	19	90	0	64	39	7	12	41	1.70
153255--153306	27	1.9	27	96	0	95	48	7	13	30	1.71
155878--155936	29	2.0	30	90	3	93	32	5	11	50	1.61
156079--156147	31	2.3	30	82	5	93	43	7	11	37	1.69
156299--156344	17	2.7	18	77	12	53	36	4	4	54	1.40
162033--162110	27	2.9	27	82	0	93	26	34	12	25	1.92
162364--162464	45	2.2	45	96	0	184	22	21	13	41	1.89
168449--168533	27	3.1	28	73	6	77	21	24	16	37	1.93
168686--168885	45	4.4	45	81	3	143	25	20	11	43	1.85
168744--168814	23	3.1	23	64	18	58	21	21	12	45	1.84
168729--168886	45	3.5	44	86	3	208	24	19	10	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
175240--175267	14	2.0	14	100	0	56	21	0	35	42	1.53
176103--176145	22	2.0	22	81	9	52	39	6	9	44	1.64
177864--178091	42	5.4	43	85	3	143	28	26	11	33	1.91
177916--178074	84	1.9	84	93	0	273	27	27	10	33	1.90
177911--178101	84	2.3	85	86	3	269	28	26	10	34	1.90
178781--178814	18	1.9	18	88	5	52	50	5	0	44	1.26
187080--187210	26	5.1	25	81	0	118	25	12	28	33	1.93
192695--192737	17	2.5	17	92	3	68	18	4	2	74	1.10
193305--193351	2	23.5	2	100	0	94	48	0	0	51	1.00
198827--199985	384	3.0	384	95	0	2052	27	19	20	32	1.97
205828--205979	30	5.1	30	84	4	182	1	28	20	49	1.60
206876--207045	61	2.8	60	83	4	211	27	13	7	51	1.66
207285--207386	28	3.3	30	77	17	102	51	9	15	22	1.72
207191--207362	91	1.9	90	84	3	229	47	11	16	23	1.80
209780--209821	22	2.0	22	90	4	68	26	9	0	64	1.24
224066--224112	18	2.6	17	81	15	51	25	4	2	68	1.19
225089--225113	6	4.2	6	100	0	50	48	32	20	0	1.50
235443--235473	16	2.0	15	93	6	53	45	9	0	45	1.36
235680--235778	48	2.1	48	94	0	171	31	14	13	41	1.83
240394--240440	15	3.1	15	84	9	51	74	6	0	19	1.03
240406--240442	15	2.4	16	86	9	58	78	2	0	18	0.87
243857--244195	84	4.0	81	80	8	362	43	9	30	17	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
243857--244195	168	2.0	168	83	6	429	43	9	30	17	1.80
256613--256638	5	5.2	5	100	0	52	23	57	19	0	1.40
266279--266352	29	2.5	30	82	10	91	43	2	0	54	1.14
267550--267587	2	19.0	2	94	0	67	47	50	2	0	1.15
268008--268080	6	12.2	6	83	0	74	39	1	43	15	1.55
268021--268098	18	4.3	18	81	4	77	39	2	42	15	1.61
269954--269995	3	14.0	3	100	0	84	33	0	0	66	0.92

Tables:   1

The End!