Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014868.1 Kokia drynarioides strain JFW-HI SEQ_129911, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4625
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:518 original size:42 final size:42

Alignment explanation


    Indices: 471--559  Score: 142
    Period size: 42  Copynumber: 2.1  Consensus size: 42

        461 TTTTTTAAAT

                         * *            *             
        471 TTTAAAAATTTCATCTTAACTGAACGGTGGTAGATAAATTCG
          1 TTTAAAAATTTCAACCTAACTGAACGGTAGTAGATAAATTCG

                                                      
        513 TTTAAAAATTTCAACCTAACTGAACGGTAGTAGATAAATTCG
          1 TTTAAAAATTTCAACCTAACTGAACGGTAGTAGATAAATTCG

            *    
        555 ATTAA
          1 TTTAA

        560 GTTATGTTAT


Statistics
Matches: 43,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  42   43  1.00

ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34


Consensus pattern (42 bp):   
TTTAAAAATTTCAACCTAACTGAACGGTAGTAGATAAATTCG
Done.