Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014871.1 Kokia drynarioides strain JFW-HI SEQ_129914, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8094
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37


Found at i:8004 original size:17 final size:17

Alignment explanation


    Indices: 7979--8016  Score: 58
    Period size: 17  Copynumber: 2.2  Consensus size: 17

       7969 CTGGGCCCAA

                *            
       7979 TAAATTTAAATTTATTT
          1 TAAAATTAAATTTATTT

                     *       
       7996 TAAAATTAAGTTTATTT
          1 TAAAATTAAATTTATTT

                
       8013 TAAA
          1 TAAA

       8017 TTTATTATAA


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  17   19  1.00

ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53


Consensus pattern (17 bp):   
TAAAATTAAATTTATTT

Found at i:8015 original size:28 final size:28

Alignment explanation


    Indices: 7983--8037  Score: 83
    Period size: 28  Copynumber: 2.0  Consensus size: 28

       7973 GCCCAATAAA

                        *         *     
       7983 TTTAAATTTATTTTAAAATTAAGTTTAT
          1 TTTAAATTTATTATAAAATTAAATTTAT

                             *         
       8011 TTTAAATTTATTATAAATTTAAATTTA
          1 TTTAAATTTATTATAAAATTAAATTTA

       8038 AAATCTATTT


Statistics
Matches: 24,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  28   24  1.00

ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56


Consensus pattern (28 bp):   
TTTAAATTTATTATAAAATTAAATTTAT
Done.