Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014873.1 Kokia drynarioides strain JFW-HI SEQ_129916, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3064
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.33


Found at i:429 original size:13 final size:13

Alignment explanation


    Indices: 411--445  Score: 54
    Period size: 12  Copynumber: 2.8  Consensus size: 13

        401 TAACCAAGTT

                         
        411 AAAATTTAATAAA
          1 AAAATTTAATAAA

                         
        424 AAAA-TTAATAAA
          1 AAAATTTAATAAA

            *         
        436 TAAATTTAAT
          1 AAAATTTAAT

        446 TAAACTTAAA


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  12   11  0.55
  13    9  0.45

ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34


Consensus pattern (13 bp):   
AAAATTTAATAAA

Found at i:776 original size:12 final size:12

Alignment explanation


    Indices: 759--789  Score: 53
    Period size: 12  Copynumber: 2.5  Consensus size: 12

        749 CTTCTTAATC

                        
        759 AAACCCAAGCCA
          1 AAACCCAAGCCA

                        
        771 AAACCCAAGCCA
          1 AAACCCAAGCCA

                   
        783 AGAACCC
          1 A-AACCC

        790 TACCCCAAAC


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  12   13  0.72
  13    5  0.28

ACGTcount: A:0.48, C:0.42, G:0.10, T:0.00


Consensus pattern (12 bp):   
AAACCCAAGCCA
Done.