genome.fa.s14878.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014878.1 Kokia drynarioides strain JFW-HI SEQ_129921, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  372812

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11252--11317	33	2.0	33	87	0	96	28	13	22	34	1.92
13212--13250	13	3.1	13	82	17	55	53	0	0	46	1.00
13212--13254	12	3.6	11	79	14	50	51	0	0	48	1.00
28883--28931	21	2.3	20	73	10	53	61	4	0	34	1.15
28893--29009	23	5.1	22	67	15	76	60	1	3	34	1.23
28972--29004	16	2.1	16	88	5	50	63	0	0	36	0.95
29023--29089	6	10.5	6	81	15	73	64	1	1	32	1.12
29023--29089	17	3.9	17	84	9	75	64	1	1	32	1.12
42552--42618	3	22.3	3	80	6	73	58	2	1	37	1.23
42936--42978	22	2.0	22	86	9	61	25	16	20	37	1.93
43780--44097	30	10.7	30	76	8	249	37	28	3	30	1.74
43780--44100	59	5.4	57	77	11	267	37	28	3	30	1.74
43780--44113	119	2.8	116	78	7	332	37	27	3	31	1.73
55604--55629	6	4.3	6	100	0	52	80	0	0	19	0.71
68238--68278	19	2.2	20	82	8	50	7	7	21	63	1.45
70624--70660	2	18.5	2	100	0	74	48	0	0	51	1.00
80278--80307	2	15.0	2	100	0	60	50	0	0	50	1.00
82670--82836	86	2.0	85	82	5	203	33	14	14	36	1.88
85750--85795	22	2.1	22	91	0	74	23	10	10	54	1.67
90414--90529	43	2.6	45	82	5	128	33	8	12	44	1.73
90447--90545	47	2.1	48	85	7	134	36	8	15	40	1.76
109524--109550	14	1.9	14	100	0	54	25	0	0	74	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110273--110300	2	14.0	2	100	0	56	50	0	0	50	1.00
113456--113561	54	2.0	54	100	0	212	28	11	20	39	1.87
117737--117780	8	5.5	8	88	0	52	34	4	15	45	1.67
117743--117782	20	2.0	20	85	0	53	35	7	15	42	1.75
117499--117891	162	2.5	159	82	8	455	43	14	14	27	1.85
117600--117939	162	2.1	160	80	7	379	41	15	12	30	1.84
120138--120197	31	1.9	31	90	6	95	43	1	3	51	1.28
120186--120251	29	2.2	30	78	10	82	50	0	1	48	1.10
121644--121717	10	7.8	10	75	13	50	44	0	0	55	0.99
130598--130635	20	1.9	20	94	0	67	36	23	7	31	1.84
146135--146160	11	2.4	11	100	0	52	84	0	15	0	0.62
147976--148042	33	2.1	32	86	8	91	37	10	1	50	1.46
150448--150504	21	2.8	22	84	10	68	59	12	0	28	1.33
154556--154586	2	15.5	2	93	0	53	51	45	3	0	1.17
155539--155571	15	2.1	17	88	11	52	36	12	24	27	1.91
155642--155674	5	6.6	5	92	0	57	0	21	0	78	0.75
177187--177247	30	2.0	30	100	0	122	37	13	16	32	1.87
178113--178155	14	3.2	13	80	12	52	60	4	0	34	1.17
188822--188849	2	14.0	2	100	0	56	50	50	0	0	1.00
191129--191245	60	2.0	59	83	5	146	35	15	14	34	1.88
192483--192507	7	3.6	7	100	0	50	40	0	12	48	1.40
206866--206934	23	3.2	22	80	10	70	47	2	10	39	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
206888--206936	23	2.1	24	88	3	73	48	2	8	40	1.44
207183--207215	17	1.9	17	100	0	66	0	9	6	84	0.76
209669--209727	29	2.1	28	83	3	73	55	6	3	33	1.43
219364--219451	41	2.1	43	89	4	135	20	2	12	64	1.37
219371--219444	18	3.8	18	70	18	58	17	2	13	66	1.37
219427--219452	12	2.2	12	100	0	52	23	0	7	69	1.14
219447--219494	26	1.9	24	91	8	78	39	2	2	56	1.23
233177--233202	2	13.0	2	100	0	52	50	0	0	50	1.00
255694--255758	31	2.1	31	88	0	94	36	9	7	46	1.65
265662--265714	12	4.4	12	77	15	56	39	1	1	56	1.21
265662--265730	37	1.9	35	82	11	86	39	1	1	57	1.16
265663--265769	19	5.8	18	69	20	60	41	1	2	54	1.26
265662--265764	48	2.1	48	82	8	118	40	1	2	54	1.26
266422--266468	2	23.5	2	91	0	76	48	4	0	46	1.21
272651--272761	56	2.0	55	96	1	204	58	7	0	33	1.32
272651--272738	29	3.1	29	73	6	99	56	7	0	35	1.28
276618--276654	2	19.5	2	89	10	60	48	0	0	51	1.00
280503--280554	26	2.0	26	84	0	68	51	1	3	42	1.31
284297--284337	20	2.0	20	100	0	82	56	9	0	34	1.32
285623--285727	20	5.2	20	76	12	99	5	3	20	70	1.24
285623--285727	40	2.6	40	79	15	117	5	3	20	70	1.24
285717--285793	12	6.4	12	79	5	57	9	9	12	68	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
285717--285793	37	2.1	37	88	4	113	9	9	12	68	1.38
285743--285831	31	2.8	34	78	16	100	8	3	15	71	1.24
305038--305089	26	2.0	26	100	0	104	38	11	30	19	1.87
306736--306801	30	2.0	34	83	13	86	48	0	10	40	1.38
319848--321032	210	5.6	209	87	3	1424	33	18	16	31	1.94
319858--321032	630	1.9	629	84	5	1597	33	18	17	30	1.94
332018--332062	23	2.0	23	90	0	72	13	24	13	48	1.78
332017--332068	23	2.3	23	82	0	68	13	25	13	48	1.79
332999--333054	20	2.8	20	76	12	71	39	7	16	37	1.76
333780--333823	21	2.0	22	82	4	54	36	6	6	50	1.56
354541--354596	26	2.1	26	86	3	76	35	3	1	58	1.26
355764--355842	39	2.0	39	92	0	131	45	15	11	27	1.80
357693--357734	21	2.0	21	95	0	75	57	7	9	26	1.56
371469--371550	39	2.0	41	93	4	141	23	6	29	41	1.78
372115--372225	37	3.0	37	100	0	222	51	16	5	27	1.66

Tables:   1

The End!