genome.fa.s14881.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014881.1 Kokia drynarioides strain JFW-HI SEQ_129924, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  216788

Tables:   1   

This is table  1  of  1  ( 87 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18618--18650	14	2.4	14	90	10	50	30	0	0	69	0.88
27829--27866	16	2.4	15	91	8	58	63	0	0	36	0.95
28262--28296	18	1.9	18	94	0	61	37	2	5	54	1.39
30578--30630	25	2.1	25	82	6	63	37	3	0	58	1.16
30709--30759	17	3.0	16	83	11	57	31	1	5	60	1.31
31771--31822	23	2.3	23	82	0	68	50	15	21	13	1.78
33625--33654	7	4.3	7	100	0	60	30	13	30	26	1.94
47685--47756	21	3.4	21	76	3	65	38	5	16	38	1.72
59179--59203	9	2.8	9	100	0	50	60	0	0	40	0.97
65291--65333	23	1.9	22	90	4	68	65	0	6	27	1.18
79433--79859	226	1.9	226	97	0	809	37	20	8	33	1.83
82757--82799	13	3.5	12	81	12	52	27	2	0	69	1.00
82835--82867	17	2.0	17	88	5	50	60	6	0	33	1.21
83866--83926	9	6.2	9	71	17	50	68	22	4	3	1.23
85700--85750	14	3.8	13	79	7	57	68	0	0	31	0.90
88271--88304	16	2.3	15	90	10	52	14	0	11	73	1.10
90699--90723	6	4.2	6	100	0	50	16	0	0	84	0.63
91871--91934	33	1.9	33	83	0	83	32	6	1	59	1.32
99436--99464	3	9.7	3	100	0	58	68	0	31	0	0.89
108322--108404	31	2.7	31	81	3	96	30	16	14	38	1.89
112331--112366	16	2.2	17	90	5	56	38	8	8	44	1.65
112320--112380	21	3.1	21	73	22	78	36	8	11	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112441--112511	25	2.5	29	76	23	80	52	7	1	39	1.38
120343--120441	40	2.5	39	88	3	153	34	19	17	29	1.94
125208--125350	24	6.0	24	92	0	214	19	28	29	22	1.98
125204--125354	48	3.1	48	91	0	239	20	29	27	21	1.98
135623--135807	96	1.9	96	87	4	275	36	15	17	29	1.91
136020--136466	58	7.6	58	78	8	383	40	3	25	30	1.73
136020--136450	29	14.7	30	67	21	150	39	3	25	31	1.72
136126--136201	30	2.5	31	78	14	88	38	0	34	27	1.57
137020--137096	3	25.0	3	71	5	55	36	2	2	58	1.26
137037--137098	12	5.1	12	74	3	61	38	1	3	56	1.25
137019--137077	31	1.9	31	89	0	91	32	3	3	61	1.29
137769--137886	17	6.8	17	83	7	157	55	1	1	41	1.20
137769--137884	35	3.4	34	84	10	155	54	1	1	42	1.21
137769--137886	52	2.3	52	89	2	175	55	1	1	41	1.20
138547--138881	49	6.8	47	68	9	170	15	27	20	35	1.94
138547--138929	98	3.9	97	86	3	496	15	26	21	36	1.93
138547--138929	198	1.9	196	85	3	518	15	26	21	36	1.93
138688--138979	50	5.9	50	72	9	186	13	25	22	38	1.90
142280--142339	22	2.5	24	81	7	61	41	18	28	11	1.85
142349--142416	23	3.0	23	95	0	118	38	23	25	13	1.91
142349--142448	46	2.2	47	80	10	109	37	25	25	13	1.91
142437--142534	23	4.3	23	83	7	114	42	19	26	11	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142597--142644	24	1.9	26	84	16	66	31	22	0	45	1.53
152709--152785	3	25.0	3	71	5	55	37	2	2	57	1.27
152712--152785	28	2.7	27	79	10	78	37	2	2	56	1.28
152708--152766	31	1.9	31	85	0	82	33	3	3	59	1.31
153462--153510	18	2.8	18	87	3	73	55	0	4	40	1.19
154597--154621	6	4.2	6	100	0	50	36	0	0	64	0.94
155865--155900	18	1.9	19	88	5	56	47	0	0	52	1.00
159647--159713	6	11.3	6	75	9	66	41	1	1	55	1.18
159646--159718	17	4.2	17	85	3	92	39	1	2	56	1.22
159650--159727	17	4.5	17	79	9	68	44	2	2	50	1.29
159690--159738	17	2.9	17	81	3	55	53	2	2	42	1.24
160469--160500	16	2.0	16	93	0	55	46	0	6	46	1.27
161488--161872	29	13.5	29	78	11	318	34	29	3	32	1.76
161523--161574	21	2.6	19	85	11	68	32	32	1	32	1.69
161525--161568	21	2.1	21	91	8	72	36	27	2	34	1.70
161493--161592	49	2.0	49	88	3	148	33	32	4	31	1.76
161543--162029	29	16.8	29	75	11	340	33	29	4	32	1.77
164713--164755	20	2.2	20	100	0	86	18	39	11	30	1.86
174416--174454	17	2.3	17	86	0	51	17	10	25	46	1.80
175086--175162	17	4.5	17	88	3	111	41	0	2	55	1.13
175086--175164	6	13.8	6	71	19	62	43	0	2	54	1.14
175198--175241	16	2.8	15	83	10	61	40	29	13	15	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177032--177214	29	6.1	30	79	13	191	32	30	3	33	1.76
177032--177214	60	3.1	59	86	7	237	32	30	3	33	1.76
177032--177221	89	2.1	90	84	7	255	31	32	4	32	1.77
188129--188185	29	2.0	29	92	0	96	10	17	10	61	1.56
188644--189045	208	1.9	207	95	0	723	36	20	22	20	1.95
189715--189776	17	3.8	16	82	6	79	45	0	3	51	1.17
189709--189776	33	2.1	33	86	5	93	42	0	5	51	1.26
191647--191787	30	4.8	29	79	6	149	31	33	3	31	1.75
191624--191787	59	2.8	58	88	5	242	32	32	4	30	1.77
191629--191805	29	6.1	29	77	8	164	32	31	4	31	1.78
194496--194547	20	2.5	20	72	9	52	67	0	3	28	1.08
195600--195647	25	1.9	25	82	0	60	33	2	18	45	1.61
197389--197439	26	2.0	26	84	7	68	21	3	13	60	1.49
198353--198377	3	8.3	3	100	0	50	0	36	32	32	1.58
201167--201221	19	2.9	19	78	13	60	76	10	7	5	1.15
214030--214070	12	3.5	12	93	3	66	19	19	26	34	1.96
214110--214186	18	4.3	18	79	6	68	44	1	2	51	1.23
214959--215012	9	6.1	9	81	12	58	57	0	1	40	1.09
214970--215013	3	14.0	3	86	9	61	61	0	0	38	0.96
216037--216292	31	8.7	30	71	8	168	36	29	2	31	1.72
216037--216201	61	2.8	60	81	8	210	36	29	1	32	1.68

Tables:   1

The End!