genome.fa.s14882.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014882.1 Kokia drynarioides strain JFW-HI SEQ_129925, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114618

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3921--3950	2	15.0	2	92	0	51	46	0	50	3	1.18
6423--6947	277	1.9	277	81	6	633	37	10	14	37	1.80
40334--40389	24	2.3	24	84	6	69	50	10	14	25	1.75
40817--41059	121	2.0	121	98	0	468	32	20	15	31	1.94
42415--42473	24	2.5	24	88	0	91	49	11	13	25	1.76
43009--43070	31	2.0	32	83	3	81	41	19	6	32	1.77
50659--50699	22	1.9	22	85	5	57	41	2	0	56	1.13
50723--50813	28	3.3	26	77	13	85	40	3	3	52	1.34
50748--50813	26	2.4	29	85	9	86	42	3	4	50	1.38
55725--55779	28	1.9	29	81	3	67	47	3	7	41	1.49
56574--56608	15	2.4	14	90	4	52	25	0	5	68	1.11
58692--58809	59	2.0	59	98	0	227	16	11	15	57	1.65
59657--59681	7	3.6	7	100	0	50	0	24	0	76	0.80
61514--61539	2	13.0	2	100	0	52	50	0	0	50	1.00
62249--62435	97	1.9	97	80	6	218	39	13	14	31	1.86
62766--62928	56	2.8	56	84	7	195	42	4	23	29	1.75
62935--63072	29	4.7	27	73	12	87	41	3	23	31	1.72
62921--63069	59	2.6	58	87	5	203	39	3	23	33	1.71
62939--63044	29	3.6	30	72	9	94	44	4	20	30	1.72
62962--63131	29	5.8	31	73	12	119	40	3	23	32	1.72
62921--63136	59	3.7	57	80	7	188	38	3	23	34	1.72
63080--63139	30	2.0	30	83	9	77	40	3	20	36	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64041--64075	13	2.6	14	95	4	63	40	20	0	40	1.52
64301--64366	3	22.0	3	74	11	55	39	1	1	57	1.17
65012--65047	17	2.1	17	90	10	56	55	2	0	41	1.14
65963--65995	11	2.8	12	86	4	50	54	0	0	45	0.99
66377--66429	23	2.4	22	87	3	70	49	13	18	18	1.80
69675--69768	41	2.3	41	88	0	134	38	24	5	31	1.78
74248--74272	12	2.1	12	100	0	50	52	0	0	48	1.00
74256--74311	29	1.9	29	89	7	87	39	0	3	57	1.16
74248--74326	29	2.7	28	78	7	86	40	0	2	56	1.12
85877--85941	28	2.3	28	100	0	130	33	16	16	32	1.92
86453--86530	40	2.0	40	89	5	122	39	2	1	56	1.21
86460--86526	18	3.3	20	78	14	75	40	2	1	55	1.24
95609--95639	15	2.0	16	93	6	55	0	9	0	90	0.46
97776--97806	2	15.5	2	100	0	62	0	51	0	48	1.00
102309--102343	18	2.0	17	94	5	61	57	0	0	42	0.99
103211--103279	27	2.5	28	76	11	70	36	1	2	59	1.21
103301--103365	19	3.3	20	73	14	64	32	0	1	66	1.01
103162--103386	10	23.8	9	67	16	82	32	3	2	61	1.26
103332--103375	19	2.3	18	85	14	54	22	2	0	75	0.92
103331--103374	21	2.2	19	84	8	52	20	2	0	77	0.88
103535--103580	7	6.6	7	100	0	92	43	13	0	43	1.43
104339--104379	14	2.9	14	88	0	64	41	4	14	39	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105241--105271	2	15.5	2	100	0	62	51	48	0	0	1.00
110304--110486	90	2.0	90	100	0	366	31	26	9	32	1.89
111887--111930	22	2.0	23	86	4	63	31	9	6	52	1.59
111887--111931	23	2.0	23	86	0	63	33	8	6	51	1.59
113851--114150	43	7.0	42	84	3	350	28	26	19	25	1.99
114528--114581	6	9.2	6	77	4	56	38	0	0	61	0.96
114497--114581	41	2.1	41	84	8	111	41	2	1	55	1.20
114540--114585	22	2.0	23	91	4	76	39	0	0	60	0.97

Tables:   1

The End!