genome.fa.s14885.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014885.1 Kokia drynarioides strain JFW-HI SEQ_129928, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76756

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1079--1134	11	4.9	11	78	10	51	41	1	1	55	1.21
1076--1141	17	3.8	17	83	4	87	45	1	1	51	1.19
1076--1143	6	11.5	6	74	12	61	47	1	1	50	1.19
1849--1883	14	2.7	13	91	8	54	51	0	0	48	1.00
3082--3288	30	6.9	30	73	17	164	32	32	4	29	1.77
3087--3288	59	3.4	59	87	3	287	32	33	4	30	1.78
6220--6245	13	2.0	13	100	0	52	46	7	15	30	1.74
6759--6784	11	2.4	11	100	0	52	19	7	0	73	1.07
7560--7631	21	3.2	22	74	20	69	36	4	2	56	1.33
7577--7662	18	4.7	18	72	23	72	33	2	2	61	1.21
7633--7671	13	3.0	13	92	0	60	35	0	0	64	0.94
8379--8419	21	2.0	21	85	9	57	34	12	0	53	1.38
9062--9405	172	2.0	172	98	0	661	38	15	17	27	1.91
15094--15225	34	3.9	34	83	2	176	34	28	15	20	1.94
15085--15233	68	2.2	68	82	2	201	35	28	14	21	1.92
19236--19987	23	32.7	23	79	5	448	33	5	13	46	1.68
19166--19538	184	2.0	184	93	1	631	31	8	13	45	1.74
19422--19989	23	24.7	23	86	0	742	34	5	14	46	1.67
20998--21030	16	2.1	16	94	0	57	39	3	12	45	1.57
24077--24242	23	7.2	23	84	2	199	36	6	12	45	1.67
24060--24233	46	3.8	47	83	10	225	35	5	13	45	1.67
31418--31646	101	2.3	101	84	0	296	29	17	17	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31397--31559	50	3.3	50	71	9	134	26	17	18	37	1.93
33189--33310	42	2.9	42	76	2	127	16	16	16	50	1.78
37443--37503	16	3.9	16	69	28	51	75	1	6	16	1.09
37448--37508	13	4.5	13	75	6	50	75	1	6	16	1.09
41847--41991	34	4.3	33	75	7	139	37	31	12	18	1.88
42236--42295	25	2.5	25	78	13	72	63	5	0	31	1.16
42334--42395	30	2.1	30	90	0	97	56	12	4	25	1.56
47263--47334	34	2.1	34	82	10	85	48	19	6	25	1.73
50036--50104	33	2.1	34	86	8	97	39	2	15	42	1.63
50720--50761	18	2.3	18	87	4	57	26	2	7	64	1.32
50732--50770	18	2.2	18	90	9	62	23	0	7	69	1.14
51565--51591	4	6.8	4	100	0	54	77	0	0	22	0.76
52164--52326	80	2.0	80	98	0	317	36	12	10	39	1.78
52647--52714	25	2.6	25	86	4	91	27	1	0	70	0.96
52693--52727	16	2.2	16	90	10	54	17	0	0	82	0.66
54671--54717	23	2.1	22	84	4	58	63	8	10	17	1.49
56542--56644	48	2.1	48	100	0	206	29	13	14	42	1.84
58446--58512	30	2.3	30	79	7	75	52	2	4	40	1.37
59693--59744	21	2.4	22	78	12	63	36	7	1	53	1.41
59970--60039	25	2.7	25	76	12	61	44	8	0	47	1.34
65221--65279	29	2.0	31	80	12	70	62	3	1	32	1.21
65339--65396	17	3.3	17	79	13	64	74	3	0	22	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65339--65413	35	2.1	35	80	11	82	70	2	1	25	1.08
65341--65406	24	2.8	23	81	6	78	71	3	1	24	1.09
67497--67545	25	2.0	25	91	0	80	63	8	10	18	1.50
69483--69548	34	1.9	34	84	6	89	34	3	6	56	1.40
70587--70643	27	2.1	27	93	0	96	45	7	0	47	1.30
74647--74684	15	2.5	15	91	0	67	7	13	52	26	1.67
74861--74930	31	2.2	33	82	5	81	35	12	8	42	1.74
76156--76254	11	8.6	11	68	12	56	62	5	4	28	1.34
76223--76260	19	2.0	19	94	0	67	60	5	10	23	1.50

Tables:   1

The End!