genome.fa.s14886.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014886.1 Kokia drynarioides strain JFW-HI SEQ_129929, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  301427

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3878--3904	2	13.5	2	100	0	54	51	0	0	48	1.00
7915--7950	18	2.1	18	89	5	56	41	0	25	33	1.55
8122--8159	12	2.9	13	80	11	51	31	0	2	65	1.06
15420--15579	83	1.9	83	82	5	198	41	15	6	36	1.73
15672--15955	130	2.2	131	89	3	448	38	15	10	36	1.81
17982--18026	7	6.4	7	81	0	54	17	2	20	60	1.47
17995--18038	19	2.2	19	84	8	52	20	2	13	63	1.40
20708--20748	21	2.0	21	85	0	55	51	2	4	41	1.36
21622--21651	14	2.1	15	93	6	53	36	3	20	40	1.69
24152--24192	17	2.7	15	85	14	57	73	0	0	26	0.84
40575--40615	18	2.3	19	83	8	50	34	0	2	63	1.08
41414--41438	13	1.9	13	100	0	50	40	0	20	40	1.52
45177--45251	28	2.5	30	85	10	93	53	17	6	22	1.67
58824--59053	118	2.0	118	82	4	286	42	6	6	45	1.53
62375--62404	14	2.1	14	93	0	51	63	20	3	13	1.43
64342--64405	32	2.0	32	90	3	103	35	0	12	51	1.40
67366--67445	30	2.6	28	79	14	79	38	11	6	43	1.66
70263--70430	80	2.1	80	81	5	187	48	10	5	35	1.61
75644--75691	23	2.0	24	88	11	73	54	0	0	45	0.99
77197--77251	3	18.3	3	84	0	74	7	32	0	60	1.24
77197--77247	9	5.7	9	97	0	93	7	33	0	58	1.27
82408--82449	21	1.9	23	85	9	61	28	16	7	47	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88890--88941	21	2.5	20	84	6	68	26	11	0	61	1.30
103697--103721	3	8.3	3	100	0	50	32	0	0	68	0.90
110225--110294	21	3.2	21	66	15	61	28	7	25	38	1.82
110241--110309	23	3.1	23	62	16	54	30	8	26	34	1.86
110222--110309	44	2.0	44	95	0	158	28	7	26	37	1.84
116260--116335	27	2.8	27	91	2	125	14	46	19	19	1.84
116710--116755	3	15.3	3	100	0	92	34	0	0	65	0.93
128376--128420	22	2.0	22	95	0	81	46	8	26	17	1.78
133321--133346	10	2.6	10	100	0	52	92	0	7	0	0.39
133321--133355	16	2.1	17	89	5	54	88	0	8	2	0.61
135462--135521	28	2.1	28	82	11	70	38	1	5	55	1.32
135884--135915	3	10.7	3	100	0	64	0	34	0	65	0.93
137485--137525	12	3.4	12	86	0	55	51	12	0	36	1.40
137485--137523	8	4.9	8	90	0	51	51	12	0	35	1.40
140100--140125	2	13.0	2	100	0	52	50	0	0	50	1.00
156026--156059	7	5.0	7	92	7	61	88	0	11	0	0.52
156026--156059	13	2.5	14	95	4	61	88	0	11	0	0.52
159330--159398	31	2.3	31	85	9	90	44	4	2	47	1.37
168278--168327	22	2.3	21	80	10	55	36	2	2	60	1.20
169114--169156	21	2.0	23	90	9	72	37	2	0	60	1.10
172622--172658	17	2.2	17	95	0	65	27	0	45	27	1.54
175852--176178	163	2.0	163	100	0	654	32	15	8	43	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181506--181539	17	2.1	16	88	5	50	50	0	0	50	1.00
188320--188353	17	2.1	17	88	5	52	41	0	0	58	0.98
195903--195947	22	2.0	22	82	0	54	31	28	8	31	1.88
197941--197978	9	4.2	9	83	9	51	36	0	0	63	0.95
201432--201570	44	3.2	42	80	6	125	27	15	15	41	1.88
201905--201954	24	2.1	24	85	7	66	12	8	8	72	1.29
202506--202546	21	2.0	21	95	0	73	41	0	14	43	1.45
204624--204649	1	26.0	1	100	0	52	100	0	0	0	0.00
204827--204860	17	1.9	18	88	5	52	64	2	5	26	1.30
218201--218233	18	1.9	17	88	11	50	36	6	9	48	1.60
219703--219797	23	4.2	23	94	2	131	37	28	21	12	1.90
219703--219836	23	5.9	22	89	5	128	39	25	23	11	1.89
226941--227043	23	4.5	22	82	4	100	38	26	22	12	1.90
226938--227062	23	5.5	23	80	3	94	41	24	22	12	1.87
233839--233877	15	2.8	14	88	7	53	5	10	5	79	1.04
234023--234051	6	5.0	6	91	8	51	0	13	0	86	0.58
241168--241203	6	6.0	6	100	0	72	83	16	0	0	0.65
253270--253394	58	2.2	56	82	8	144	42	3	5	48	1.42
255499--255559	29	2.1	29	81	3	70	31	14	22	31	1.94
255541--255823	29	9.8	29	68	14	93	37	3	23	35	1.72
255537--255868	59	5.7	57	79	7	208	36	3	24	36	1.73
255571--255892	59	5.5	57	79	8	247	36	3	22	37	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255571--255868	117	2.5	115	78	8	280	37	3	23	36	1.70
255694--255892	30	6.8	30	80	8	223	35	1	23	39	1.64
255603--255895	30	10.0	29	73	11	222	36	2	23	37	1.68
257768--257842	17	4.4	16	81	3	78	50	4	2	42	1.35
260149--260317	41	4.1	41	89	3	236	39	10	24	25	1.88
260149--260360	82	2.6	81	81	10	229	38	9	25	25	1.87
264435--264466	2	16.0	2	100	0	64	50	0	0	50	1.00
278011--278052	17	2.4	18	76	8	50	16	4	2	76	1.07
282857--282886	9	3.3	9	95	0	51	66	0	0	33	0.92
284872--284954	41	2.0	40	88	6	123	68	10	2	18	1.30
285029--285072	23	2.0	22	87	12	65	54	9	4	31	1.52
285038--285089	23	2.3	23	83	12	63	61	5	7	25	1.45
285114--285217	11	9.4	11	70	6	57	57	25	7	9	1.57
286012--286120	47	2.3	47	100	0	218	39	18	7	34	1.78
288599--288632	2	17.0	2	100	0	68	50	0	0	50	1.00
289070--289120	22	2.4	22	87	6	70	43	0	0	56	0.99
289213--289264	20	2.5	20	84	6	59	71	1	0	26	0.97
291968--291999	2	16.0	2	93	0	55	46	0	3	50	1.17
296530--296569	21	1.9	21	90	10	64	60	10	2	27	1.42
297544--297594	4	12.8	4	87	8	77	76	0	23	0	0.79
301320--301357	5	8.2	5	83	16	55	18	0	0	81	0.69
301294--301361	22	3.0	22	79	10	66	19	5	1	73	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301313--301357	14	3.3	13	90	6	63	17	2	0	80	0.82
301313--301371	27	2.2	27	81	0	64	18	1	3	76	1.02

Tables:   1

The End!