genome.fa.s14889.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014889.1 Kokia drynarioides strain JFW-HI SEQ_129932, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  229557

Tables:   1   

This is table  1  of  1  ( 87 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51--95	14	3.2	14	80	0	54	48	40	0	11	1.39
2318--2374	20	2.8	20	81	0	69	33	50	5	10	1.59
2372--2398	8	3.4	8	100	0	54	14	51	11	22	1.73
2362--2459	40	2.4	42	86	6	146	30	43	7	18	1.77
6375--6401	8	3.4	8	100	0	54	74	0	0	25	0.83
6388--6439	27	2.0	26	84	3	68	50	0	0	50	1.00
6593--6637	24	1.9	24	86	4	65	57	2	8	31	1.41
10767--10805	20	1.9	21	84	5	53	28	10	5	56	1.54
13965--14004	4	10.0	4	88	0	62	22	27	2	47	1.64
21828--22152	170	1.9	172	79	11	364	40	0	34	24	1.60
22283--22320	14	2.7	14	100	0	76	23	21	13	42	1.88
23906--24003	37	2.6	38	82	4	110	58	23	1	17	1.45
31084--31112	6	4.8	6	100	0	58	86	0	13	0	0.58
31315--31342	6	4.7	6	100	0	56	53	0	46	0	1.00
31844--31877	2	17.0	2	100	0	68	50	0	0	50	1.00
31879--31945	32	2.2	30	84	7	82	64	2	0	32	1.09
31921--31962	19	2.3	18	87	4	57	61	0	0	38	0.96
35566--35714	69	2.2	69	86	0	199	44	22	17	15	1.86
35572--35702	23	5.7	23	85	0	163	42	22	18	16	1.88
43236--43288	29	2.0	28	82	17	69	58	3	5	32	1.39
47203--47248	22	2.2	21	84	7	58	32	6	6	54	1.52
47848--47882	15	2.3	15	90	0	52	57	0	11	31	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55812--55934	63	2.0	63	93	0	210	39	3	14	42	1.62
62011--62040	6	4.8	6	92	8	51	0	66	0	33	0.92
62011--62040	13	2.4	12	94	5	51	0	66	0	33	0.92
64645--64677	13	2.4	14	90	5	50	30	24	6	39	1.79
83948--84016	31	2.2	31	87	5	95	23	8	14	53	1.68
83976--84111	59	2.3	59	83	1	155	26	11	12	50	1.73
84007--84114	31	3.8	26	75	17	90	25	10	12	51	1.70
85563--85596	17	2.0	17	88	0	50	38	32	0	29	1.58
88827--88862	17	2.1	17	89	0	54	55	2	0	41	1.14
88822--88863	17	2.3	19	76	16	52	59	2	0	38	1.10
89705--89759	27	2.0	27	82	0	65	5	20	0	74	1.01
92810--93032	87	2.6	87	91	1	349	43	4	12	40	1.62
93039--93097	25	2.4	25	88	8	77	47	1	13	37	1.53
93046--93097	25	2.1	25	92	7	88	46	1	15	36	1.57
93051--93112	25	2.5	25	84	7	74	54	1	16	27	1.51
93214--93246	17	2.0	17	94	5	59	45	0	0	54	0.99
95846--95880	16	2.3	15	95	5	61	54	0	2	42	1.15
96096--96157	23	2.7	23	78	16	65	50	0	3	46	1.17
96089--96157	12	5.8	11	73	14	50	50	0	2	46	1.16
96175--96228	17	3.4	16	72	27	53	50	0	1	48	1.11
96563--96596	16	2.1	17	94	5	61	35	0	2	61	1.11
98420--98448	12	2.3	13	94	5	51	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100013--100053	21	1.9	21	85	5	55	56	0	4	39	1.21
100486--100523	18	2.1	17	90	9	58	57	0	0	42	0.98
111785--111842	25	2.4	25	80	13	68	43	1	0	55	1.10
114058--114138	38	2.2	37	78	12	87	45	0	3	50	1.19
122343--122433	44	2.1	44	83	4	112	41	7	5	45	1.56
122789--122864	27	2.8	29	66	18	72	23	7	15	52	1.69
123381--123420	15	2.5	16	88	8	55	37	2	0	60	1.11
123798--123848	2	25.5	2	80	7	59	1	52	0	45	1.12
128433--128500	32	2.1	31	81	10	75	41	2	1	54	1.24
128229--128622	203	2.0	201	90	4	632	43	5	5	45	1.50
149597--149630	9	3.8	9	88	0	50	38	5	11	44	1.65
155710--155761	3	16.7	3	76	7	50	0	42	0	57	0.98
155715--155765	10	5.3	10	88	6	61	0	41	0	58	0.98
155723--155761	13	3.0	13	82	14	53	0	41	0	58	0.98
159785--159848	12	5.5	12	77	15	64	50	0	0	50	1.00
159782--159848	11	5.8	11	78	15	57	49	0	0	50	1.00
159788--159856	34	2.0	34	81	13	79	50	0	0	49	1.00
159806--159862	25	2.2	26	81	6	71	56	0	0	43	0.99
159812--159856	17	2.6	18	75	10	58	55	0	0	44	0.99
161722--161768	22	2.2	22	92	3	78	74	2	8	14	1.15
161721--161768	21	2.2	23	85	11	73	75	2	8	14	1.13
162574--162616	19	2.3	19	84	8	52	58	4	0	37	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165946--165996	15	3.3	15	74	15	50	66	7	3	21	1.34
167591--168039	221	2.0	221	90	3	699	48	6	18	25	1.72
169142--169213	29	2.4	29	74	2	72	38	8	12	40	1.73
176801--176843	11	3.7	11	84	9	59	74	6	18	0	1.04
177801--177901	4	26.5	4	76	18	60	27	0	0	71	0.93
177801--177903	19	5.9	18	70	22	69	28	0	0	70	0.93
177803--177864	5	13.0	5	77	17	53	33	0	0	66	0.92
177808--177901	10	9.7	10	72	14	63	27	1	0	71	0.93
177804--177904	5	20.0	5	77	17	52	27	0	0	71	0.93
179503--179558	29	1.9	29	88	0	85	32	28	12	26	1.93
183440--183470	2	15.5	2	100	0	62	48	0	0	51	1.00
189078--189125	25	1.9	25	84	16	64	62	0	0	37	0.95
189096--189137	16	2.5	17	80	7	50	59	0	2	38	1.10
191002--191070	31	2.4	26	80	17	75	43	2	15	37	1.62
197178--197215	18	2.1	18	100	0	76	18	21	39	21	1.93
197250--197312	19	3.4	19	77	18	53	38	3	1	57	1.24
201462--201503	21	2.0	21	81	9	50	35	7	11	45	1.69
216082--216129	24	2.0	24	95	0	87	56	4	12	27	1.54
216319--216366	20	2.3	21	82	13	64	31	4	2	62	1.26
217538--217605	7	9.9	7	90	3	75	32	19	0	48	1.49
220760--220999	125	1.9	125	87	1	356	39	20	20	20	1.93

Tables:   1

The End!