Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014892.1 Kokia drynarioides strain JFW-HI SEQ_129935, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  189546

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4037--4146
33
3.3
33
100
0
220
37
20
8
33
1.83
8638--8749
53
2.1
54
93
1
190
33
16
21
29
1.95
9449--9503
27
2.0
27
82
10
67
47
9
3
40
1.53
14294--14361
32
2.0
34
83
13
88
57
2
4
35
1.34
17965--17996
12
2.7
12
95
0
55
31
21
34
12
1.91
35215--35271
24
2.5
22
77
11
60
49
0
3
47
1.18
35215--35272
23
2.5
22
74
17
55
48
0
3
48
1.18
61267--61306
2
20.5
2
94
5
73
47
0
0
52
1.00
74848--75078
115
2.0
115
99
0
453
42
6
11
39
1.66
75171--75231
29
2.1
29
82
11
72
34
16
6
42
1.74
76046--76079
17
2.1
16
88
5
50
17
0
11
70
1.16
81006--81084
38
2.1
38
97
0
149
30
0
3
65
1.10
81123--81168
25
1.9
23
86
8
65
34
4
4
56
1.39
84539--84649
31
3.7
31
68
20
90
45
11
14
27
1.79
84462--84649
90
2.1
90
80
5
202
46
13
14
25
1.80
86000--86034
17
2.1
17
88
0
52
85
0
2
11
0.69
88644--88669
6
4.3
6
100
0
52
65
34
0
0
0.93
94794--94835
21
2.0
22
85
4
59
38
2
2
57
1.25
95090--95314
109
2.1
109
100
0
450
46
11
13
28
1.78
96868--96919
26
2.0
27
88
11
81
21
13
13
51
1.74
96853--96928
26
2.7
29
75
19
79
26
13
10
50
1.73
99354--99384
16
1.9
16
100
0
62
64
6
3
25
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100763--100950
101
1.9
101
94
0
331
23
16
18
42
1.89
105636--105788
76
2.0
76
98
0
297
33
7
18
40
1.78
106384--106463
39
2.1
38
86
9
108
35
12
8
43
1.73
108372--108511
65
2.2
65
97
0
262
36
7
19
37
1.79
108533--108596
29
2.2
30
86
5
87
25
0
23
51
1.48
113220--113273
3
18.0
3
100
0
108
0
33
0
66
0.92
113947--113979
2
16.5
2
100
0
66
0
0
51
48
1.00
118564--118615
26
2.0
26
100
0
104
19
11
19
50
1.77
119628--119652
4
6.2
4
100
0
50
76
0
0
24
0.80
120344--120383
21
2.0
21
95
5
73
25
5
7
62
1.42
120729--120772
23
2.0
21
82
8
52
47
4
0
47
1.22
123089--123377
144
2.0
143
97
0
542
38
8
10
42
1.70
126804--126871
24
2.9
23
79
10
75
45
11
2
39
1.56
130162--130226
29
2.2
30
83
8
80
30
3
9
56
1.46
134126--134183
25
2.2
25
78
6
62
43
0
1
55
1.10
139625--139663
19
2.1
19
100
0
78
30
20
23
25
1.98
142601--142626
12
2.2
12
100
0
52
69
7
0
23
1.14
142603--142682
41
2.0
41
89
0
124
63
12
3
20
1.43
143337--143382
24
2.0
23
86
4
65
65
0
2
32
1.05
147812--147855
23
1.9
23
100
0
88
38
22
25
13
1.91
147812--147861
23
2.3
21
93
6
82
40
24
22
14
1.90
152082--152106
2
12.5
2
100
0
50
0
0
52
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
152034--152178
72
2.0
72
83
2
184
15
12
28
44
1.82
152917--152989
30
2.4
30
95
0
128
35
5
9
49
1.59
158219--158329
55
2.0
55
98
0
213
31
11
17
39
1.85
161597--162539
364
2.6
364
95
0
1663
29
15
18
36
1.91
168249--168299
18
3.0
16
74
20
50
23
0
11
64
1.26
169897--169927
2
15.5
2
100
0
62
51
0
0
48
1.00
170864--170900
6
6.2
6
93
0
65
51
0
35
13
1.41
177108--177149
18
2.2
20
83
8
52
40
4
14
40
1.67
177742--177787
22
2.0
24
83
8
60
13
17
6
63
1.50
180855--180892
4
9.8
4
94
5
69
47
26
0
26
1.52
183120--183151
2
16.0
2
100
0
64
50
0
0
50
1.00
187216--189130
210
9.1
210
92
1
2977
33
18
18
29
1.95

Tables:   1

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