Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014893.1 Kokia drynarioides strain JFW-HI SEQ_129936, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100689
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Warning! 262 characters in sequence are not A, C, G, or T
Found at i:160 original size:13 final size:13
Alignment explanation
Indices: 137--169 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
127 TATATTATAA
137 AAATT-ATAAATT
1 AAATTAATAAATT
*
149 AATTTAATAAATT
1 AAATTAATAAATT
162 AAATTAAT
1 AAATTAAT
170 TATATTTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
AAATTAATAAATT
Found at i:11572 original size:20 final size:20
Alignment explanation
Indices: 11534--11572 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
11524 TAAGTTTATA
**
11534 TAAAATAAAAATATTAAATT
1 TAAAATAAAAATAAAAAATT
*
11554 TAAATTAAAAATAAAAAAT
1 TAAAATAAAAATAAAAAAT
11573 AAAAAATTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (20 bp):
TAAAATAAAAATAAAAAATT
Found at i:11855 original size:37 final size:35
Alignment explanation
Indices: 11787--11855 Score: 86
Period size: 36 Copynumber: 1.9 Consensus size: 35
11777 AAATTCTAAA
* *
11787 ATATATAATTATAAATTTTAAAATATGAAAATAAT
1 ATATATAATTAAAAATTTTAAAATATAAAAATAAT
11822 ATATATAAATTAAAAATTGTTATAAA-ATAAAAAT
1 ATATAT-AATTAAAAATT-TTA-AAATATAAAAAT
11856 GTATTTAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
35 6 0.21
36 10 0.34
37 10 0.34
38 3 0.10
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (35 bp):
ATATATAATTAAAAATTTTAAAATATAAAAATAAT
Found at i:11936 original size:18 final size:18
Alignment explanation
Indices: 11915--11949 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
11905 TTTTTAGAAT
*
11915 TTTTTTATAATTTATATG
1 TTTTTTATAAATTATATG
*
11933 TTTTTTTTAAATTATAT
1 TTTTTTATAAATTATAT
11950 ATATTTATGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (18 bp):
TTTTTTATAAATTATATG
Found at i:11937 original size:20 final size:20
Alignment explanation
Indices: 11914--11951 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
11904 ATTTTTAGAA
11914 TTTTTTTATAATT-TATATGT
1 TTTTTTTA-AATTATATATGT
11934 TTTTTTTAAATTATATAT
1 TTTTTTTAAATTATATAT
11952 ATTTATGTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (20 bp):
TTTTTTTAAATTATATATGT
Found at i:11952 original size:29 final size:29
Alignment explanation
Indices: 11920--11984 Score: 71
Period size: 28 Copynumber: 2.2 Consensus size: 29
11910 AGAATTTTTT
*
11920 TATAATTTATATGTTTTTTT-TAAATT-A
1 TATAATTTATATCTTTTTTTATAAATTAA
* *
11947 TATATATTTATGTCTTTTTTTAATATATTAA
1 TATA-ATTTATATCTTTTTTT-ATAAATTAA
11978 TATAATT
1 TATAATT
11985 ACATAGTAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
27 4 0.13
28 14 0.45
30 8 0.26
31 5 0.16
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.62
Consensus pattern (29 bp):
TATAATTTATATCTTTTTTTATAAATTAA
Found at i:17660 original size:13 final size:14
Alignment explanation
Indices: 17642--17670 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
17632 GTCCATTCCA
17642 TGTATATGCA-GTT
1 TGTATATGCATGTT
17655 TGTATATGCATGTT
1 TGTATATGCATGTT
17669 TG
1 TG
17671 AGATGTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.21, C:0.07, G:0.24, T:0.48
Consensus pattern (14 bp):
TGTATATGCATGTT
Found at i:23221 original size:30 final size:30
Alignment explanation
Indices: 23185--23249 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
23175 CACATAGAAT
23185 GCCACATGTCATTGTCTAATTATTATGTCA
1 GCCACATGTCATTGTCTAATTATTATGTCA
*
23215 GCCACATGTCATTGTCTAATTATTCTGTCA
1 GCCACATGTCATTGTCTAATTATTATGTCA
23245 GCCAC
1 GCCAC
23250 GCCAATTTGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.37
Consensus pattern (30 bp):
GCCACATGTCATTGTCTAATTATTATGTCA
Found at i:25106 original size:16 final size:17
Alignment explanation
Indices: 25085--25119 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
25075 ATTCCCATGC
*
25085 TTTTAGCAG-ATTCCGT
1 TTTTAGCAGTAATCCGT
25101 TTTTAGCAGTAATCCGT
1 TTTTAGCAGTAATCCGT
25118 TT
1 TT
25120 ATGGTTTTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.20, C:0.17, G:0.17, T:0.46
Consensus pattern (17 bp):
TTTTAGCAGTAATCCGT
Found at i:37629 original size:31 final size:31
Alignment explanation
Indices: 37591--37652 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
37581 ATACTCCTAA
37591 GAACAAACAACAATAACCTTATGTAATGCCT
1 GAACAAACAACAATAACCTTATGTAATGCCT
37622 GAACAAACAACAATAACCTTATGTAATGCCT
1 GAACAAACAACAATAACCTTATGTAATGCCT
37653 CCACTAGAGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.45, C:0.23, G:0.10, T:0.23
Consensus pattern (31 bp):
GAACAAACAACAATAACCTTATGTAATGCCT
Found at i:42821 original size:11 final size:11
Alignment explanation
Indices: 42805--42829 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
42795 TAGGGTTGAC
42805 AAAAAAAATAA
1 AAAAAAAATAA
42816 AAAAAAAATAA
1 AAAAAAAATAA
42827 AAA
1 AAA
42830 GGATTTATCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAAAAAATAA
Found at i:51361 original size:46 final size:47
Alignment explanation
Indices: 51284--51378 Score: 156
Period size: 46 Copynumber: 2.0 Consensus size: 47
51274 AAATATTGTG
51284 TCATATCATATCCTTCCTTCGATCTAATTTATTAGTATAATATCATA
1 TCATATCATATCCTTCCTTCGATCTAATTTATTAGTATAATATCATA
* * *
51331 TCATATCAT-TCCTTCTTTTGATCTAATTTATTAGTATCATATCATA
1 TCATATCATATCCTTCCTTCGATCTAATTTATTAGTATAATATCATA
51377 TC
1 TC
51379 TTTTTCTTAT
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
46 36 0.80
47 9 0.20
ACGTcount: A:0.29, C:0.19, G:0.04, T:0.47
Consensus pattern (47 bp):
TCATATCATATCCTTCCTTCGATCTAATTTATTAGTATAATATCATA
Found at i:55994 original size:2 final size:2
Alignment explanation
Indices: 55987--56011 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
55977 AGAACAGAGT
55987 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
56012 GTATGTATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:57841 original size:22 final size:21
Alignment explanation
Indices: 57820--57859 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
57810 TTTTAATAAT
*
57820 ATAAATAAG-TGAAATTTTTA
1 ATAAAAAAGATGAAATTTTTA
*
57840 ATAAAAAAGATTAAATTTTT
1 ATAAAAAAGATGAAATTTTT
57860 CTTTAATCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (21 bp):
ATAAAAAAGATGAAATTTTTA
Found at i:58340 original size:13 final size:12
Alignment explanation
Indices: 58289--58344 Score: 60
Period size: 12 Copynumber: 4.6 Consensus size: 12
58279 GAAGTCAAAC
58289 TTAAATACTAAA
1 TTAAATACTAAA
* *
58301 TT-AAGACAAAAA
1 TTAAATAC-TAAA
*
58313 TTAAATACCAAA
1 TTAAATACTAAA
58325 TTAAATACTGAAA
1 TTAAATACT-AAA
58338 TTAAATA
1 TTAAATA
58345 TAGGTACCAA
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
11 4 0.11
12 18 0.50
13 14 0.39
ACGTcount: A:0.59, C:0.09, G:0.04, T:0.29
Consensus pattern (12 bp):
TTAAATACTAAA
Found at i:62081 original size:21 final size:20
Alignment explanation
Indices: 62057--62099 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
62047 AGAAAATTGG
62057 TCACAATATTAATATTTTTCA
1 TCACAATATTAATA-TTTTCA
* * *
62078 TCACATTTTTCATATTTTCA
1 TCACAATATTAATATTTTCA
62098 TC
1 TC
62100 TGTATAACAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.30, C:0.19, G:0.00, T:0.51
Consensus pattern (20 bp):
TCACAATATTAATATTTTCA
Found at i:73041 original size:16 final size:17
Alignment explanation
Indices: 73008--73040 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
72998 ACCCATTGTG
73008 TAATTTGTCTCTTTTTT
1 TAATTTGTCTCTTTTTT
73025 TAATTTG-CT-TTTTTT
1 TAATTTGTCTCTTTTTT
73040 T
1 T
73041 TTTTGCCCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 2 0.12
17 7 0.44
ACGTcount: A:0.12, C:0.09, G:0.06, T:0.73
Consensus pattern (17 bp):
TAATTTGTCTCTTTTTT
Found at i:73909 original size:95 final size:90
Alignment explanation
Indices: 73810--73979 Score: 250
Period size: 91 Copynumber: 1.8 Consensus size: 90
73800 ATATGCGCAC
* * *
73810 GTGTACGTATGCATATATATATAGACATGAAAGCTGCACGTTAACCAACAAATATAACCAGGCTA
1 GTGTACGTATGC--ATACATAT--ACATGAAAGCTGCACATGAACCAACAAATATAACCAGGCTA
73875 CCTCCCAAGTAGCCATATATATATAAACAT
62 CCT-CCAAGTAGCCATATATATATAAACAT
* *
73905 GTGTATGTATGCATACATATACATGAAAGCTGCACATGAACCAACAAATATAACCAGGTTACCTC
1 GTGTACGTATGCATACATATACATGAAAGCTGCACATGAACCAACAAATATAACCAGGCTACCTC
73970 CAAGTAGCCA
66 CAAGTAGCCA
73980 AATTGGGCCT
Statistics
Matches: 70, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
90 11 0.16
91 41 0.59
93 7 0.10
95 11 0.16
ACGTcount: A:0.39, C:0.22, G:0.15, T:0.24
Consensus pattern (90 bp):
GTGTACGTATGCATACATATACATGAAAGCTGCACATGAACCAACAAATATAACCAGGCTACCTC
CAAGTAGCCATATATATATAAACAT
Found at i:74050 original size:218 final size:217
Alignment explanation
Indices: 73673--74107 Score: 782
Period size: 218 Copynumber: 2.0 Consensus size: 217
73663 AAAACAAGCT
*
73673 TATATATATAAACATGTGTATGTAAGCATATATATACATGAAAGCTGCACATGACAACAAATATA
1 TATATATATAAACATGTGTATGTAAGCATACATATACATGAAAGCTGCACATGACAACAAATATA
73738 ACCAGGTTACCTCCCAAGTAGCCAAATTGGGCCTTAAGCTTAATAAACTATAGAAACCATATATA
66 ACCAGGTTACCTCCCAAGTAGCCAAATTGGGCCTTAAGCTTAATAAACTATAGAAACCATATATA
* * *
73803 TGCGCACGTGTACGTATGCATATATATATAGACATGAAAGCTGCACGTTAACCAACAAATATAAC
131 TACGCACGTGTACGTATGCATATATATATAGACATGAAAGCTGCACATGAACCAACAAATATAAC
73868 CAGGCTACCTCCCAAGTAGCCA
196 CAGGCTACCTCCCAAGTAGCCA
*
73890 TATATATATAAACATGTGTATGTATGCATACATATACATGAAAGCTGCACATGAACCAACAAATA
1 TATATATATAAACATGTGTATGTAAGCATACATATACATGAAAGCTGCACATG-A-CAACAAATA
73955 TAACCAGGTTACCT-CCAAGTAGCCAAATTGGGCCTTAAGCTTAATAAACTATAGAAACCATATA
64 TAACCAGGTTACCTCCCAAGTAGCCAAATTGGGCCTTAAGCTTAATAAACTATAGAAACCATATA
*
74019 TATACGCACGTGTACGTATGCATATATATATATACATGAAAGCTGCACATGAACCAACAAATATA
129 TATACGCACGTGTACGTATGCATATATATATAGACATGAAAGCTGCACATGAACCAACAAATATA
*
74084 ACCAGGTTACCTCCCAAGTAGCCA
194 ACCAGGCTACCTCCCAAGTAGCCA
74108 AATTGGGCCT
Statistics
Matches: 209, Mismatches: 7, Indels: 3
0.95 0.03 0.01
Matches are distributed among these distances:
217 51 0.24
218 135 0.65
219 23 0.11
ACGTcount: A:0.40, C:0.21, G:0.14, T:0.25
Consensus pattern (217 bp):
TATATATATAAACATGTGTATGTAAGCATACATATACATGAAAGCTGCACATGACAACAAATATA
ACCAGGTTACCTCCCAAGTAGCCAAATTGGGCCTTAAGCTTAATAAACTATAGAAACCATATATA
TACGCACGTGTACGTATGCATATATATATAGACATGAAAGCTGCACATGAACCAACAAATATAAC
CAGGCTACCTCCCAAGTAGCCA
Found at i:75783 original size:8 final size:8
Alignment explanation
Indices: 75770--75797 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
75760 AGAAGATCAA
75770 ACATCATC
1 ACATCATC
75778 ACATCATC
1 ACATCATC
75786 ACATCATC
1 ACATCATC
75794 ACAT
1 ACAT
75798 GAAATAGATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (8 bp):
ACATCATC
Found at i:80922 original size:23 final size:23
Alignment explanation
Indices: 80892--80941 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
80882 GTTTTAATTT
*
80892 AAAAAAACTGGTAAAAAAATAAA
1 AAAAAAACTGATAAAAAAATAAA
*
80915 AAAAAAACTGATAGAAAAATAAA
1 AAAAAAACTGATAAAAAAATAAA
80938 AAAA
1 AAAA
80942 GGGGAAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.76, C:0.04, G:0.08, T:0.12
Consensus pattern (23 bp):
AAAAAAACTGATAAAAAAATAAA
Found at i:90656 original size:18 final size:18
Alignment explanation
Indices: 90633--90672 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
90623 AACTCTCAAT
90633 GTTACAAAGAAAATAAAA
1 GTTACAAAGAAAATAAAA
*
90651 GTTAC-AAGAAAATCAAA
1 GTTACAAAGAAAATAAAA
90668 -TTACA
1 GTTACA
90673 CAATGTATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 4 0.20
17 11 0.55
18 5 0.25
ACGTcount: A:0.60, C:0.10, G:0.10, T:0.20
Consensus pattern (18 bp):
GTTACAAAGAAAATAAAA
Found at i:91509 original size:66 final size:65
Alignment explanation
Indices: 91402--91533 Score: 246
Period size: 66 Copynumber: 2.0 Consensus size: 65
91392 TTTCGAGTTC
91402 AAGCTCCATTGGTAAGCTCCAATGTTATCTTTTTTTTTTTTTCCCATTTCTTTTAGTTTTTTATG
1 AAGCTCCATTGGTAAGCTCCAATGTTATCTTTTTTTTTTTTTCCCATTTCTTTTAGTTTTTTATG
*
91467 ANAGCTCCATTGGTAAGCTCCAATGTTATCTTTTTTTTTTTTTCCCATTTCTTTTTGTTTTTTAT
1 A-AGCTCCATTGGTAAGCTCCAATGTTATCTTTTTTTTTTTTTCCCATTTCTTTTAGTTTTTTAT
91532 G
65 G
91533 A
1 A
91534 GATACACTGT
Statistics
Matches: 65, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
65 1 0.02
66 64 0.98
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.55
Consensus pattern (65 bp):
AAGCTCCATTGGTAAGCTCCAATGTTATCTTTTTTTTTTTTTCCCATTTCTTTTAGTTTTTTATG
Found at i:96986 original size:57 final size:57
Alignment explanation
Indices: 96917--97029 Score: 217
Period size: 57 Copynumber: 2.0 Consensus size: 57
96907 AGAATTGTAG
96917 TTAATTGAGAAAATGGGATTCCAAAGTTTGAGATTTTGAAAGAGCTTAGTGTGCTAT
1 TTAATTGAGAAAATGGGATTCCAAAGTTTGAGATTTTGAAAGAGCTTAGTGTGCTAT
*
96974 TTAATTGAGAAAATGGGATTCCAAAGTTTGAGATTTTTAAAGAGCTTAGTGTGCTA
1 TTAATTGAGAAAATGGGATTCCAAAGTTTGAGATTTTGAAAGAGCTTAGTGTGCTA
97030 CACTATGGGT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.34, C:0.07, G:0.24, T:0.35
Consensus pattern (57 bp):
TTAATTGAGAAAATGGGATTCCAAAGTTTGAGATTTTGAAAGAGCTTAGTGTGCTAT
Found at i:99987 original size:1 final size:1
Alignment explanation
Indices: 99981--100029 Score: 53
Period size: 1 Copynumber: 49.0 Consensus size: 1
99971 CATTAGAAGC
* * * * *
99981 AAAAAAAAAAAGANAAAAAAAAAAAAGAAAAAAAAAAGAAAAAAGAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
100030 GGTCTTGAAC
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 38 1.00
ACGTcount: A:0.90, C:0.00, G:0.08, T:0.00
Consensus pattern (1 bp):
A
Found at i:100000 original size:12 final size:11
Alignment explanation
Indices: 99997--100030 Score: 59
Period size: 11 Copynumber: 3.0 Consensus size: 11
99987 AAAAAGANAA
99997 AAAAAAAAAAG
1 AAAAAAAAAAG
100008 AAAAAAAAAAG
1 AAAAAAAAAAG
100019 AAAAAAGAAAAG
1 AAAAAA-AAAAG
100031 GTCTTGAACG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 17 0.77
12 5 0.23
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:100027 original size:18 final size:17
Alignment explanation
Indices: 99981--100029 Score: 66
Period size: 15 Copynumber: 2.9 Consensus size: 17
99971 CATTAGAAGC
*
99981 AAAAAAAAAAAG--ANA
1 AAAAAAAAAAAGAAAAA
99996 AAAAAAAAAAAGAAAAA
1 AAAAAAAAAAAGAAAAA
100013 AAAAAGAAAAAAGAAAA
1 AAAAA-AAAAAAGAAAA
100030 GGTCTTGAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 12 0.40
17 7 0.23
18 11 0.37
ACGTcount: A:0.90, C:0.00, G:0.08, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAAAGAAAAA
Done.