Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014896.1 Kokia drynarioides strain JFW-HI SEQ_129939, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 156904
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.34
Warning! 236 characters in sequence are not A, C, G, or T
Found at i:2716 original size:11 final size:11
Alignment explanation
Indices: 2689--2731 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
2679 ACAATAACGA
*
2689 CAAAATAATAA
1 CAAAATAATAG
2700 CAAAATAATAG
1 CAAAATAATAG
** *
2711 TGAAATGATAG
1 CAAAATAATAG
2722 CAAAATAATA
1 CAAAATAATA
2732 TAAAAACAAC
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.63, C:0.07, G:0.09, T:0.21
Consensus pattern (11 bp):
CAAAATAATAG
Found at i:3828 original size:16 final size:17
Alignment explanation
Indices: 3798--3830 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
3788 AGTTAGAGAA
3798 GAAAAAAAAGGAAAATTT
1 GAAAAAAAA-GAAAATTT
3816 GAAAAAAAA-AAAATT
1 GAAAAAAAAGAAAATT
3831 AAAATGTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.73, C:0.00, G:0.12, T:0.15
Consensus pattern (17 bp):
GAAAAAAAAGAAAATTT
Found at i:9657 original size:22 final size:22
Alignment explanation
Indices: 9615--9657 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
9605 AACTTTCTTT
*
9615 TTTTGTTGTCATTTCATTATTG
1 TTTTGTTGTCATTTCACTATTG
*
9637 TTTTGTTGTCATTTCGCTATT
1 TTTTGTTGTCATTTCACTATT
9658 ATATTGTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.12, C:0.12, G:0.14, T:0.63
Consensus pattern (22 bp):
TTTTGTTGTCATTTCACTATTG
Found at i:9664 original size:22 final size:22
Alignment explanation
Indices: 9617--9665 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
9607 CTTTCTTTTT
* * *
9617 TTGTTGTCATTTCATTATTGTT
1 TTGTTGTCATTTCACTATTATA
*
9639 TTGTTGTCATTTCGCTATTATA
1 TTGTTGTCATTTCACTATTATA
9661 TTGTT
1 TTGTT
9666 ATTATTTTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.14, C:0.10, G:0.14, T:0.61
Consensus pattern (22 bp):
TTGTTGTCATTTCACTATTATA
Found at i:13667 original size:26 final size:26
Alignment explanation
Indices: 13612--13667 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
13602 GATTTACTTT
* * * *
13612 ATTATTTCTATTTTTTATTAAGAATT
1 ATTATTTCTAATTTTAATAAAGAATA
13638 ATTATTTCTAATTTTAACTAAAGAA-A
1 ATTATTTCTAATTTTAA-TAAAGAATA
13664 ATTA
1 ATTA
13668 AAAAATTTGG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.39, C:0.05, G:0.04, T:0.52
Consensus pattern (26 bp):
ATTATTTCTAATTTTAATAAAGAATA
Found at i:16988 original size:29 final size:31
Alignment explanation
Indices: 16928--16990 Score: 78
Period size: 29 Copynumber: 2.1 Consensus size: 31
16918 TATTAATTTG
* *
16928 TAAAATTTGAATCAAATCAATATTTCTTATA
1 TAAAATTTGAATCAAATCAATAGTTCATATA
16959 TAAAA-TTGAA-CAAAATCAA-AGTTCATATA
1 TAAAATTTGAATC-AAATCAATAGTTCATATA
16988 TAA
1 TAA
16991 CATTACACAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 12 0.41
30 12 0.41
31 5 0.17
ACGTcount: A:0.51, C:0.10, G:0.05, T:0.35
Consensus pattern (31 bp):
TAAAATTTGAATCAAATCAATAGTTCATATA
Found at i:23747 original size:12 final size:11
Alignment explanation
Indices: 23727--23756 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
23717 CAATGTTTAG
23727 TTTTTTTTGTT
1 TTTTTTTTGTT
23738 TTTGTTTTTGTT
1 TTT-TTTTTGTT
23750 TTTTTTT
1 TTTTTTT
23757 GTGAGGAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (11 bp):
TTTTTTTTGTT
Found at i:27901 original size:17 final size:17
Alignment explanation
Indices: 27869--27901 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
27859 AATAAACATA
27869 TACTAAATATATAATAC
1 TACTAAATATATAATAC
27886 TACTATAATATA-AATA
1 TACTA-AATATATAATA
27902 TTAAAAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (17 bp):
TACTAAATATATAATAC
Found at i:30253 original size:15 final size:14
Alignment explanation
Indices: 30233--30272 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 14
30223 CTTGTCTACC
30233 CTAAAAAAAGTTAAA
1 CTAAAAAAA-TTAAA
30248 CTAAAAGAAATTAAA
1 CTAAAA-AAATTAAA
30263 CTAAATAAAA
1 CTAAA-AAAA
30273 ATATTTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 19 0.83
16 4 0.17
ACGTcount: A:0.68, C:0.07, G:0.05, T:0.20
Consensus pattern (14 bp):
CTAAAAAAATTAAA
Found at i:32173 original size:266 final size:264
Alignment explanation
Indices: 31696--32184 Score: 791
Period size: 266 Copynumber: 1.8 Consensus size: 264
31686 AGAATGACGG
* * * *
31696 CATCAACGTGAACTATAAAAAATGAGTCATTTTCGTACAAAATTTTACATTTAGATTATTTTTGT
1 CATCAACGTGAACTATAAAAAATGAGTCATTTTCATACAAAATTTTACATCTAAATCATTTTTGT
* ** *
31761 AATTAATAATTTTTTTGGATCATTTTCGAAAAAACCATTATTGTTGTTTTCTATTATATATTATG
66 AATTAATAATTCTTTTGGATCATTTTAAAAAAAACCATTATTGTTGTTTTCTATTATATATTATA
* *
31826 TTAATAAAATTTGATTTTTCCAAATCTTGTGATAGTGATGCTAATTAATTATAATGTTTCTTCAA
131 TTAATAAAATTTGATTTTTCCAAATCTTGTGATAATGATGCTAATTAATTATAATATTTCTTCAA
*
31891 ATGATCAAACTCTTAAAATCTT-TTATTTGACGGCGCCATATATATATATTTTTTAAAATTTGAT
196 ATGACCAAACTCTTAAAATCTTATTATTTGACGGCGCCATATATATATATTTTTTAAAATTTGAT
31955 GATT
261 GATT
* * *
31959 CATCAGCGTGAACTATAAAAAATGAGTCATTTTTATACAAAATTTTACATCTAAATCGTTTTTGT
1 CATCAACGTGAACTATAAAAAATGAGTCATTTTCATACAAAATTTTACATCTAAATCATTTTTGT
32024 AATTAATAATTCTTTTGGATCATTTTAAAAAAAAAAACCATTATTGTTGTTTTCTATTATATATT
66 AATTAATAATTCTTTTGGATCATTTT---AAAAAAAACCATTATTGTTGTTTTCTATTATATATT
* *
32089 ATATTAATAAAATTTGATTTTTTCAAATGTTGTGATAATGATGCTAATTAATTATAATATTTCTT
128 ATATTAATAAAATTTGATTTTTCCAAATCTTGTGATAATGATGCTAATTAATTATAATATTTCTT
*
32154 CAAATGACCAAACTCTTAAAATTTTATTATT
193 CAAATGACCAAACTCTTAAAATCTTATTATT
32185 AAATTTTTAC
Statistics
Matches: 205, Mismatches: 17, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
263 83 0.40
266 117 0.57
267 5 0.02
ACGTcount: A:0.36, C:0.10, G:0.09, T:0.45
Consensus pattern (264 bp):
CATCAACGTGAACTATAAAAAATGAGTCATTTTCATACAAAATTTTACATCTAAATCATTTTTGT
AATTAATAATTCTTTTGGATCATTTTAAAAAAAACCATTATTGTTGTTTTCTATTATATATTATA
TTAATAAAATTTGATTTTTCCAAATCTTGTGATAATGATGCTAATTAATTATAATATTTCTTCAA
ATGACCAAACTCTTAAAATCTTATTATTTGACGGCGCCATATATATATATTTTTTAAAATTTGAT
GATT
Found at i:43465 original size:29 final size:30
Alignment explanation
Indices: 43432--43503 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 30
43422 AAATTTTTGT
*
43432 TTTTAGTCCTTGTAC-TTT-AATTTGAACAA
1 TTTTAGTCCTTATACTTTTGAA-TTGAACAA
* *
43461 TTTTAGTCCCTATACTTTTTGAATTGATCAA
1 TTTTAGTCCTTATAC-TTTTGAATTGAACAA
43492 TTTTAGTCCTTA
1 TTTTAGTCCTTA
43504 CCCAAAATGA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
29 13 0.36
31 21 0.58
32 2 0.06
ACGTcount: A:0.25, C:0.15, G:0.10, T:0.50
Consensus pattern (30 bp):
TTTTAGTCCTTATACTTTTGAATTGAACAA
Found at i:47048 original size:59 final size:59
Alignment explanation
Indices: 46956--47069 Score: 228
Period size: 59 Copynumber: 1.9 Consensus size: 59
46946 CAATTTACAG
46956 CAAGCAAAAACCATAACGATCCATATCCACACATCACAAGCAGACAAGCCTAGACATCA
1 CAAGCAAAAACCATAACGATCCATATCCACACATCACAAGCAGACAAGCCTAGACATCA
47015 CAAGCAAAAACCATAACGATCCATATCCACACATCACAAGCAGACAAGCCTAGAC
1 CAAGCAAAAACCATAACGATCCATATCCACACATCACAAGCAGACAAGCCTAGAC
47070 TTATTTATTA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 55 1.00
ACGTcount: A:0.46, C:0.32, G:0.11, T:0.11
Consensus pattern (59 bp):
CAAGCAAAAACCATAACGATCCATATCCACACATCACAAGCAGACAAGCCTAGACATCA
Found at i:51983 original size:253 final size:253
Alignment explanation
Indices: 51405--52138 Score: 858
Period size: 253 Copynumber: 2.9 Consensus size: 253
51395 CATCCTAGTA
* * * * * * * * *
51405 AATGCAGCCTAGCTATAAAAACCTTATTCAACCATGGATGACATGAATAAGAT-ACGATGCTCGA
1 AATGCAGCTTAGCTTTAAAAACATGATTCAACCATGGATGATACGAATAAGATAATGGTGCTCAA
* * * * * *
51469 GCAATATATCAC-AGGAATAGGAACATGTAAAAGATAAGCTTTACCGGATCGATTTCAACTAATG
66 GCAATATATCACTA-GAATAGAAACATGTAAAAGAAAAGTTTTTCCGGGTCAATTTCAACTAATG
* * * * * *
51533 CAGCTTAGCT-T-TAAAAACATGATCCTACCATGGATGATATGAATAATTG-AATGGTGCTCAAG
130 CAGCTTAGCTATAAAAAAACATGATTCAATCATGGATGATACGAATAA-AGAAATGGTGCTCAAG
* *
51595 CAATATATCACTAGAATAGAAACATGTAAAAGAGAAAAGTATTTCTGGGTCAATTTAAACC
194 CAATATATCACTAGAATAGAAACATGTAAAAGA-AAAAGTATTTCTAGGTCAATTGAAACC
** * *
51656 AATGCAGCTT-GCTATATAAAAAACATGATTTGACCATAGATGATACGAATAAGATAAT-GTGGT
1 AATGCAGCTTAGCT-T-T-AAAAACATGATTCAACCATGGATGATACGAATAAGATAATGGTGCT
*
51719 CAAGCAATATATCACTAAAATAGAAACATGTAAAAGAAAAGTTTTTCCGGGTCAATTTCAACTAA
63 CAAGCAATATATCACTAGAATAGAAACATGTAAAAGAAAAGTTTTTCCGGGTCAATTTCAACTAA
* * *
51784 TGCAGCTTAGCTATAGAAAAACATGATTCAATTATGGATGATACGAATAAAGAAAATGGTGTTCA
128 TGCAGCTTAGCTATAAAAAAACATGATTCAATCATGGATGATACGAATAAAG-AAATGGTGCTCA
* * ** * **
51849 AGCAATATATCACTAGAATAGAAACATGTAAAAGAAAAGGTTTTTC-AGGTTGATTGCAATT
192 AGCAATATATCACTAGAATAGAAACATGTAAAAGAAAAAGTATTTCTAGGTCAATTGAAACC
* * * *
51910 AATGCAGCTTAGCTTTAAAAACATGACTCAACCATGGATGATAGGAAAAAGATAATGGTTCTCAA
1 AATGCAGCTTAGCTTTAAAAACATGATTCAACCATGGATGATACGAATAAGATAATGGTGCTCAA
* * * * *
51975 GAAATATATCACTAGAATACAAACACGTAAAAGAAAAGTTTTTCCAGGT-AGATTTCAACCAATG
66 GCAATATATCACTAGAATAGAAACATGTAAAAGAAAAGTTTTTCCGGGTCA-ATTTCAACTAATG
* * * *
52039 CAGCTTAGCTATAAAAAAACATGATTCGATGATGGATGACACGAAT-AAGATAATGGTGGTCAAG
130 CAGCTTAGCTATAAAAAAACATGATTCAATCATGGATGATACGAATAAAGA-AATGGTGCTCAAG
52103 CAATATATCACTAGAATAGAAACATGTAAAAGAAAA
194 CAATATATCACTAGAATAGAAACATGTAAAAGAAAA
52139 TTTTCGGGTT
Statistics
Matches: 414, Mismatches: 56, Indels: 25
0.84 0.11 0.05
Matches are distributed among these distances:
250 3 0.01
251 10 0.02
252 87 0.21
253 205 0.50
254 23 0.06
255 41 0.10
256 45 0.11
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.26
Consensus pattern (253 bp):
AATGCAGCTTAGCTTTAAAAACATGATTCAACCATGGATGATACGAATAAGATAATGGTGCTCAA
GCAATATATCACTAGAATAGAAACATGTAAAAGAAAAGTTTTTCCGGGTCAATTTCAACTAATGC
AGCTTAGCTATAAAAAAACATGATTCAATCATGGATGATACGAATAAAGAAATGGTGCTCAAGCA
ATATATCACTAGAATAGAAACATGTAAAAGAAAAAGTATTTCTAGGTCAATTGAAACC
Found at i:52118 original size:127 final size:127
Alignment explanation
Indices: 51405--52142 Score: 815
Period size: 127 Copynumber: 5.9 Consensus size: 127
51395 CATCCTAGTA
* * * * * * *
51405 AATGCAGCCTAGCTAT--AAAAACCTTATTCAACCATGGATGACATGAATAAGAT-ACGATGCTC
1 AATGCAGCTTAGCTATAAAAAAACATGATTCAACCATGGATGATACGAATAAGATAATGGTGCTC
* * * * * *
51467 GAGCAATATATCAC-AGGAATAGGAACATGTAAAAGATAAGCTTTACC-GGATCGATTTCAACT
66 AAGCAATATATCACTA-GAATAGAAACATGTAAAAGAAAAGTTTTTCCAGG-TAGATTTCAACT
* * * * *
51529 AATGCAGCTTAGCT-T-TAAAAACATGATCCTACCATGGATGATATGAATAA-TTGAATGGTGCT
1 AATGCAGCTTAGCTATAAAAAAACATGATTCAACCATGGATGATACGAATAAGAT-AATGGTGCT
* ** *
51591 CAAGCAATATATCACTAGAATAGAAACATGTAAAAGAGAAAAGTATTTCTGGGTCA-ATTTAAAC
65 CAAGCAATATATCACTAGAATAGAAACATGT-AAA-AGAAAAGTTTTTCCAGGT-AGATTTCAAC
*
51655 C
127 T
** * *
51656 AATGCAGCTT-GCTATATAAAAAACATGATTTGACCATAGATGATACGAATAAGATAAT-GTGGT
1 AATGCAGCTTAGCTATA-AAAAAACATGATTCAACCATGGATGATACGAATAAGATAATGGTGCT
* *
51719 CAAGCAATATATCACTAAAATAGAAACATGTAAAAGAAAAGTTTTTCCGGGTCA-ATTTCAACT
65 CAAGCAATATATCACTAGAATAGAAACATGTAAAAGAAAAGTTTTTCCAGGT-AGATTTCAACT
* ** * *
51782 AATGCAGCTTAGCTATAGAAAAACATGATTCAATTATGGATGATACGAATAAAGAAAATGGTGTT
1 AATGCAGCTTAGCTATAAAAAAACATGATTCAACCATGGATGATACGAAT-AAGATAATGGTGCT
* * *
51847 CAAGCAATATATCACTAGAATAGAAACATGTAAAAGAAAAGGTTTTT-CAGGTTGATTGCAATT
65 CAAGCAATATATCACTAGAATAGAAACATGTAAAAGAAAA-GTTTTTCCAGGTAGATTTCAACT
* * * * *
51910 AATGCAGCTTAGCT-T-TAAAAACATGACTCAACCATGGATGATAGGAAAAAGATAATGGTTCTC
1 AATGCAGCTTAGCTATAAAAAAACATGATTCAACCATGGATGATACGAATAAGATAATGGTGCTC
* * * *
51973 AAGAAATATATCACTAGAATACAAACACGTAAAAGAAAAGTTTTTCCAGGTAGATTTCAACC
66 AAGCAATATATCACTAGAATAGAAACATGTAAAAGAAAAGTTTTTCCAGGTAGATTTCAACT
* ** * *
52035 AATGCAGCTTAGCTATAAAAAAACATGATTCGATGATGGATGACACGAATAAGATAATGGTGGTC
1 AATGCAGCTTAGCTATAAAAAAACATGATTCAACCATGGATGATACGAATAAGATAATGGTGCTC
52100 AAGCAATATATCACTAGAATAGAAACATGTAAAAGAAAA-TTTT
66 AAGCAATATATCACTAGAATAGAAACATGTAAAAGAAAAGTTTT
52143 CGGGTTGAAA
Statistics
Matches: 520, Mismatches: 74, Indels: 38
0.82 0.12 0.06
Matches are distributed among these distances:
123 2 0.00
124 48 0.09
125 107 0.21
126 101 0.19
127 119 0.23
128 104 0.20
129 38 0.07
130 1 0.00
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.26
Consensus pattern (127 bp):
AATGCAGCTTAGCTATAAAAAAACATGATTCAACCATGGATGATACGAATAAGATAATGGTGCTC
AAGCAATATATCACTAGAATAGAAACATGTAAAAGAAAAGTTTTTCCAGGTAGATTTCAACT
Found at i:52239 original size:96 final size:97
Alignment explanation
Indices: 52070--52247 Score: 288
Period size: 96 Copynumber: 1.8 Consensus size: 97
52060 TGATTCGATG
*
52070 ATGGATGACACGAATAAGATAATGGTGGTCAAGCAATATATCACTAGAATAGAAACATGTAAAAG
1 ATGGATGACACGAATAAGATAATGGTGCTCAAGCAATATATCACTAGAATAGAAACATGTAAAAG
52135 AAAATTTT-CGGGTTGAAAATAAGATTCAACC
66 AAAATTTTCCGGGTTGAAAATAAGATTCAACC
* * *
52166 ATGGATGATATGAATAAGATAATGGTGCTCAAGCAATCTA-CACTAGAATAGAAACATGTAAAAG
1 ATGGATGACACGAATAAGATAATGGTGCTCAAGCAATATATCACTAGAATAGAAACATGTAAAAG
*
52230 AAAGTTTTTCCGGGTTGA
66 AAA-ATTTTCCGGGTTGA
52248 TTTCAACTAA
Statistics
Matches: 75, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
95 27 0.36
96 40 0.53
97 8 0.11
ACGTcount: A:0.43, C:0.11, G:0.21, T:0.25
Consensus pattern (97 bp):
ATGGATGACACGAATAAGATAATGGTGCTCAAGCAATATATCACTAGAATAGAAACATGTAAAAG
AAAATTTTCCGGGTTGAAAATAAGATTCAACC
Found at i:52328 original size:219 final size:222
Alignment explanation
Indices: 51937--52357 Score: 625
Period size: 219 Copynumber: 1.9 Consensus size: 222
51927 AAAACATGAC
*
51937 TCAACCATGGATGATAGGAAAAAGATAATGGTTCTCAAGAAATATATCACTAGAATACAAACACG
1 TCAACCATGGATGATAGGAAAAAGATAATGGTGCTCAAGAAATATATCACTAGAATACAAACACG
* *
52002 TAAAAGAAAAGTTTTTCCAGGTAGATTTCAACCAATGCAGCTTAGCTATAAAAAAACATGATTCG
66 TAAAAGAAAAGTTTTTCCAGGTAGATTTCAACCAATGCAGCTTAGCTAT-AAAAAACAAGATTCA
** * * * *
52067 ATGATGGATGACACGAATAAGATAATGGTGGTCAAGCAATATATCACTAGAATAGAAACATGTAA
130 ACCATGGATGACACAAATAAGAAAATGGTGCTCAAACAATATATCACTAGAATAGAAACATGTAA
52132 AAGAAAATTTTCGGGTTGAAAATAAGAT
195 AAGAAAATTTTCGGGTTGAAAATAAGAT
* * * * * *
52160 TCAACCATGGATGATATGAATAAGATAATGGTGCTCAAGCAATCTA-CACTAGAATAGAAACATG
1 TCAACCATGGATGATAGGAAAAAGATAATGGTGCTCAAGAAATATATCACTAGAATACAAACACG
* * *
52224 TAAAAG-AAAGTTTTTCCGGGTTGATTTCAACTAATGCAGCTTAGCGT-T-AAAAACAAGATTCA
66 TAAAAGAAAAGTTTTTCCAGGTAGATTTCAACCAATGCAGCTTAGC-TATAAAAAACAAGATTCA
*
52286 ACCATGGATGATACAAATAAGAAAATGGTGCTCAAACAATATATCACTAGAATAGAAACATGTAA
130 ACCATGGATGACACAAATAAGAAAATGGTGCTCAAACAATATATCACTAGAATAGAAACATGTAA
52351 AAGAAAA
195 AAGAAAA
52358 GTTCTTCAGG
Statistics
Matches: 178, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
219 77 0.43
221 37 0.21
222 23 0.13
223 41 0.23
ACGTcount: A:0.44, C:0.13, G:0.18, T:0.24
Consensus pattern (222 bp):
TCAACCATGGATGATAGGAAAAAGATAATGGTGCTCAAGAAATATATCACTAGAATACAAACACG
TAAAAGAAAAGTTTTTCCAGGTAGATTTCAACCAATGCAGCTTAGCTATAAAAAACAAGATTCAA
CCATGGATGACACAAATAAGAAAATGGTGCTCAAACAATATATCACTAGAATAGAAACATGTAAA
AGAAAATTTTCGGGTTGAAAATAAGAT
Found at i:52453 original size:127 final size:123
Alignment explanation
Indices: 52157--52550 Score: 540
Period size: 127 Copynumber: 3.2 Consensus size: 123
52147 TTGAAAATAA
*
52157 GATTCAACCATGGATGATATGAATAAGATAATGGTGCTCAAGCAATCTACACTAGAATAGAAACA
1 GATTCAACCATGGATGATATGAATAAGATAATGGTGCTCAAGCAATATACACTAGAATAGAAACA
* * *
52222 TGTAAAAG-AAAGTTTTTCCGGGTTGATTTCAACTAATGCAGCTTAGCGTTAAAAACAA
66 TGTAAAAGAAAAGTTTTTCAGGGTTGATTTCAACTAATGCAGCTTA-CCTTAAAAACAT
** * *
52280 GATTCAACCATGGATGATACAAATAAGAAAATGGTGCTCAAACAATATATCACTAGAATAGAAAC
1 GATTCAACCATGGATGATATGAATAAGATAATGGTGCTCAAGCAATATA-CACTAGAATAGAAAC
* * *
52345 ATGTAAAAGAAAAGTTCTTCAGGGTTAATTTCAACCAATGCAGCTTACCTATAAAAAAACAT
65 ATGTAAAAGAAAAGTTTTTCAGGGTTGATTTCAACTAATGCAGCTTACCT-T--AAAAACAT
*** * *
52407 GATTCGGTCATGGATGACATGAATAAGATAATGGTGGTCAAGCAATATAACACTAGAATAGAAAC
1 GATTCAACCATGGATGATATGAATAAGATAATGGTGCTCAAGCAATAT-ACACTAGAATAGAAAC
*
52472 ATGTAAAAGAAAAGTTTTTCCA-GGTTGATTTCAACTAATGCAGCTTAGCTTTAAAAACAT
65 ATGTAAAAGAAAAGTTTTT-CAGGGTTGATTTCAACTAATGCAGCTTA-CCTTAAAAACAT
*
52532 GATTGAACCATGGATGATA
1 GATTCAACCATGGATGATA
52551 CCTTGAGCAA
Statistics
Matches: 234, Mismatches: 29, Indels: 14
0.84 0.10 0.05
Matches are distributed among these distances:
123 44 0.19
124 26 0.11
125 56 0.24
127 103 0.44
128 5 0.02
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.26
Consensus pattern (123 bp):
GATTCAACCATGGATGATATGAATAAGATAATGGTGCTCAAGCAATATACACTAGAATAGAAACA
TGTAAAAGAAAAGTTTTTCAGGGTTGATTTCAACTAATGCAGCTTACCTTAAAAACAT
Found at i:57628 original size:28 final size:27
Alignment explanation
Indices: 57580--57632 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
57570 TTCTCCATTT
*
57580 TTTTTCTTTCTTTTGGGGAAGGAAAGG
1 TTTTTCTTTCTTTTGGAGAAGGAAAGG
57607 TTTTTCTTT-TTTGTGAGAGAAGGAAA
1 TTTTTCTTTCTTT-TG-GAGAAGGAAA
57633 TGCGATGAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 3 0.13
27 11 0.48
28 9 0.39
ACGTcount: A:0.23, C:0.06, G:0.26, T:0.45
Consensus pattern (27 bp):
TTTTTCTTTCTTTTGGAGAAGGAAAGG
Found at i:61168 original size:13 final size:14
Alignment explanation
Indices: 61150--61179 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
61140 TTTTAAACTA
61150 TTTTTACT-TTTTT
1 TTTTTACTATTTTT
61163 TTTTTACTATTTTT
1 TTTTTACTATTTTT
61177 TTT
1 TTT
61180 ACCTTCCCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.10, C:0.07, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTTACTATTTTT
Found at i:65586 original size:20 final size:21
Alignment explanation
Indices: 65550--65591 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
65540 AAATTAATTG
65550 AAATTAATAATATTATTACAAA
1 AAATTAATAATATTATTA-AAA
65572 AAATTAA-AA-ATTATTAAAA
1 AAATTAATAATATTATTAAAA
65591 A
1 A
65592 CTTGTAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 4 0.20
20 7 0.35
21 2 0.10
22 7 0.35
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (21 bp):
AAATTAATAATATTATTAAAA
Found at i:65724 original size:19 final size:20
Alignment explanation
Indices: 65702--65776 Score: 77
Period size: 20 Copynumber: 3.9 Consensus size: 20
65692 TTTCAATTAC
65702 TTGAA-TTTTAAATATTTTT
1 TTGAACTTTTAAATATTTTT
65721 TTGAACTTTTATAATA-TTTT
1 TTGAACTTTTA-AATATTTTT
* * * *
65741 TTCAATTTTTATATATTATT
1 TTGAACTTTTAAATATTTTT
65761 TTG-ACTTTTAAA-ATTT
1 TTGAACTTTTAAATATTT
65777 ATAATTATAT
Statistics
Matches: 45, Mismatches: 8, Indels: 7
0.75 0.13 0.12
Matches are distributed among these distances:
18 3 0.07
19 15 0.33
20 23 0.51
21 4 0.09
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (20 bp):
TTGAACTTTTAAATATTTTT
Found at i:79777 original size:15 final size:16
Alignment explanation
Indices: 79751--79780 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
79741 ATTAAAAAAA
79751 TTAAATTGTAATAAAT
1 TTAAATTGTAATAAAT
79767 TTAAATT-TAATAAA
1 TTAAATTGTAATAAA
79781 ATAATTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.43
Consensus pattern (16 bp):
TTAAATTGTAATAAAT
Found at i:79782 original size:16 final size:16
Alignment explanation
Indices: 79742--79782 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
79732 AGCAATATAA
*
79742 TTAA-AAAAATTAAAT
1 TTAATAAAATTTAAAT
79757 TGTAAT-AAATTTAAAT
1 T-TAATAAAATTTAAAT
79773 TTAATAAAAT
1 TTAATAAAAT
79783 AATTTTAACA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (16 bp):
TTAATAAAATTTAAAT
Found at i:80494 original size:24 final size:25
Alignment explanation
Indices: 80443--80495 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 25
80433 ATAAATATGA
* * *
80443 TAAAAATTATAATAAAATTAATATT
1 TAAAAAATATAATAAAATTAACAAT
*
80468 TAAAAAATA-AATAATATTAACAAT
1 TAAAAAATATAATAAAATTAACAAT
80492 TAAA
1 TAAA
80496 TTACATGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 16 0.67
25 8 0.33
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (25 bp):
TAAAAAATATAATAAAATTAACAAT
Found at i:81067 original size:19 final size:19
Alignment explanation
Indices: 81045--81106 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 19
81035 TATATTTTAT
81045 TAAATTATATCTATTTACG
1 TAAATTATATCTATTTACG
* * *
81064 TAAAGTTAGAATATATTTTA-T
1 TAAA-TTA-TATCTA-TTTACG
81085 TAAATTATATCTATTTACG
1 TAAATTATATCTATTTACG
81104 TAA
1 TAA
81107 GGTTAGAATT
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
18 4 0.12
19 11 0.33
20 6 0.18
21 8 0.24
22 4 0.12
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.47
Consensus pattern (19 bp):
TAAATTATATCTATTTACG
Found at i:81080 original size:21 final size:21
Alignment explanation
Indices: 81056--81115 Score: 54
Period size: 21 Copynumber: 3.0 Consensus size: 21
81046 AAATTATATC
81056 TATTTACGTAAAGTTAGAATA
1 TATTTACGTAAAGTTAGAATA
* * *
81077 TATTTTA-TTAAA-TTA-TATC
1 TA-TTTACGTAAAGTTAGAATA
*
81096 TATTTACGTAAGGTTAGAAT
1 TATTTACGTAAAGTTAGAAT
81116 TTTTTTTAGG
Statistics
Matches: 29, Mismatches: 6, Indels: 8
0.67 0.14 0.19
Matches are distributed among these distances:
18 4 0.14
19 7 0.24
20 6 0.21
21 8 0.28
22 4 0.14
ACGTcount: A:0.38, C:0.05, G:0.12, T:0.45
Consensus pattern (21 bp):
TATTTACGTAAAGTTAGAATA
Found at i:81123 original size:40 final size:40
Alignment explanation
Indices: 81035--81115 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
81025 TAAAAAAAAG
81035 TATATTTTATTAAATTATATCTATTTACGTAAAGTTAGAA
1 TATATTTTATTAAATTATATCTATTTACGTAAAGTTAGAA
*
81075 TATATTTTATTAAATTATATCTATTTACGTAAGGTTAGAA
1 TATATTTTATTAAATTATATCTATTTACGTAAAGTTAGAA
81115 T
1 T
81116 TTTTTTTAGG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.38, C:0.05, G:0.09, T:0.48
Consensus pattern (40 bp):
TATATTTTATTAAATTATATCTATTTACGTAAAGTTAGAA
Found at i:92411 original size:3 final size:3
Alignment explanation
Indices: 92405--92448 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
92395 GTTTTTTTCC
92405 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
92449 GAAATTTAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:98799 original size:21 final size:20
Alignment explanation
Indices: 98751--98799 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
98741 TCTGTTGACT
*
98751 ACCCCAATTTCTAATCACTA
1 ACCCTAATTTCTAATCACTA
* *
98771 ACAGCTAATTTCTAAATCCCTA
1 AC-CCTAATTTCT-AATCACTA
98793 ACCCTAA
1 ACCCTAA
98800 CAAAATAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 2 0.09
21 12 0.52
22 9 0.39
ACGTcount: A:0.37, C:0.33, G:0.02, T:0.29
Consensus pattern (20 bp):
ACCCTAATTTCTAATCACTA
Found at i:99759 original size:23 final size:21
Alignment explanation
Indices: 99728--99773 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
99718 AATAACTTGA
99728 TTAACTCAAATAACTTGAATTAT
1 TTAACTC-AA-AACTTGAATTAT
* *
99751 TTAATTCAAAATTTGAATTAT
1 TTAACTCAAAACTTGAATTAT
99772 TT
1 TT
99774 TTCGAATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 13 0.62
22 2 0.10
23 6 0.29
ACGTcount: A:0.41, C:0.09, G:0.04, T:0.46
Consensus pattern (21 bp):
TTAACTCAAAACTTGAATTAT
Found at i:100447 original size:3 final size:3
Alignment explanation
Indices: 100439--100475 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
100429 TTGACGAGTA
100439 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
100476 ACTCTCTTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:101601 original size:33 final size:34
Alignment explanation
Indices: 101559--101641 Score: 114
Period size: 35 Copynumber: 2.4 Consensus size: 34
101549 TGTTTTCTAA
* *
101559 TAAAAAGAGATTCCCTGTCT-ATTGCATTGCTAT
1 TAAAAAGAGATTCCCTGTCTCATTGCATTACCAT
* *
101592 TAATAAGAGATTCGCTGTCTGCATTGCATTACCAT
1 TAAAAAGAGATTCCCTGTCT-CATTGCATTACCAT
101627 TAAAAAGAGATTCCC
1 TAAAAAGAGATTCCC
101642 CTCAGTTGGG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
33 18 0.43
35 24 0.57
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.33
Consensus pattern (34 bp):
TAAAAAGAGATTCCCTGTCTCATTGCATTACCAT
Found at i:101617 original size:30 final size:30
Alignment explanation
Indices: 101563--101622 Score: 77
Period size: 33 Copynumber: 1.9 Consensus size: 30
101553 TTCTAATAAA
101563 AAGAGATTCCCTGTCTATTGCATTGCTATTAAT
1 AAGAGATTCCCTGTC--TTGCATTGC-ATTAAT
*
101596 AAGAGATTCGCTGTC-TGCATTGCATTA
1 AAGAGATTCCCTGTCTTGCATTGCATTA
101623 CCATTAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
29 4 0.15
30 8 0.31
33 14 0.54
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (30 bp):
AAGAGATTCCCTGTCTTGCATTGCATTAAT
Found at i:120878 original size:24 final size:24
Alignment explanation
Indices: 120829--120878 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
120819 TATTATAGAG
*
120829 ATTAAATCAAATTAATTTTTTATT
1 ATTAAATCAAATTAATTTGTTATT
*
120853 ATTAAAT-AAATTAATTTAGTTCTT
1 ATTAAATCAAATTAATTT-GTTATT
120877 AT
1 AT
120879 ATTAAAAGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 10 0.43
24 13 0.57
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.52
Consensus pattern (24 bp):
ATTAAATCAAATTAATTTGTTATT
Found at i:121149 original size:29 final size:29
Alignment explanation
Indices: 121099--121154 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
121089 TTTGATTCAT
121099 TTTAATAGTAAAAGGACCAAATTGAACCA
1 TTTAATAGTAAAAGGACCAAATTGAACCA
* *
121128 TTTAATAGTAGAGAGGA-TAAATTGAAC
1 TTTAATAGTA-AAAGGACCAAATTGAAC
121155 AGATTGCTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.46, C:0.09, G:0.18, T:0.27
Consensus pattern (29 bp):
TTTAATAGTAAAAGGACCAAATTGAACCA
Found at i:139192 original size:23 final size:22
Alignment explanation
Indices: 139150--139192 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
139140 GTTTTCTTTT
* *
139150 AATTATTTATTCTTTTAATTTA
1 AATTATTTATACTTTAAATTTA
139172 AATTATTTATAACTTTAAATT
1 AATTATTTAT-ACTTTAAATT
139193 GTTTTATCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (22 bp):
AATTATTTATACTTTAAATTTA
Found at i:144756 original size:21 final size:21
Alignment explanation
Indices: 144731--144773 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
144721 AATAATTTCA
144731 ATATTAATTAAAAC-TAAAAAT
1 ATATTAA-TAAAACATAAAAAT
* *
144752 ATATTCATAAAACATTAAAAT
1 ATATTAATAAAACATAAAAAT
144773 A
1 A
144774 ATTTCAAGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (21 bp):
ATATTAATAAAACATAAAAAT
Found at i:146134 original size:28 final size:27
Alignment explanation
Indices: 146082--146149 Score: 68
Period size: 28 Copynumber: 2.4 Consensus size: 27
146072 AACGGTCTAA
*
146082 ATTTATTTTTGATCTTTTTTTTTTC-TC
1 ATTT-TTTTTGATCTTTTTTCTTTCTTC
146109 TATTTTTTTT-ATCTTTTTCCTCTTTCTTC
1 -ATTTTTTTTGATCTTTTT--TCTTTCTTC
*
146138 ATTTTTATTGAT
1 ATTTTTTTTGAT
146150 ATAACAATGC
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
26 8 0.24
27 5 0.15
28 17 0.50
29 4 0.12
ACGTcount: A:0.12, C:0.13, G:0.03, T:0.72
Consensus pattern (27 bp):
ATTTTTTTTGATCTTTTTTCTTTCTTC
Found at i:146488 original size:10 final size:9
Alignment explanation
Indices: 146468--146522 Score: 56
Period size: 9 Copynumber: 5.7 Consensus size: 9
146458 ACATAATATT
146468 TAAAGAATTA
1 TAAA-AATTA
146478 TATAAAATTA
1 TA-AAAATTA
*
146488 TAATAATTA
1 TAAAAATTA
*
146497 TAAAAAATA
1 TAAAAATTA
146506 TTATAAAATTA
1 -TA-AAAATTA
146517 TAAAAA
1 TAAAAA
146523 ATTAATTATT
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
9 17 0.45
10 13 0.34
11 8 0.21
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.35
Consensus pattern (9 bp):
TAAAAATTA
Found at i:146517 original size:20 final size:21
Alignment explanation
Indices: 146484--146524 Score: 75
Period size: 20 Copynumber: 2.0 Consensus size: 21
146474 ATTATATAAA
146484 ATTATAATAATTATAAAAAAT
1 ATTATAATAATTATAAAAAAT
146505 ATTATAA-AATTATAAAAAAT
1 ATTATAATAATTATAAAAAAT
146525 TAATTATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (21 bp):
ATTATAATAATTATAAAAAAT
Found at i:146523 original size:10 final size:10
Alignment explanation
Indices: 146468--146526 Score: 59
Period size: 10 Copynumber: 6.0 Consensus size: 10
146458 ACATAATATT
*
146468 TAAAGAATTA
1 TAAAAAATTA
*
146478 TATAAAATTA
1 TAAAAAATTA
*
146488 T-AATAATTA
1 TAAAAAATTA
146497 TAAAAAA-TA
1 TAAAAAATTA
*
146506 TTATAAAATTA
1 -TAAAAAATTA
146517 TAAAAAATTA
1 TAAAAAATTA
146527 ATTATTATTG
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
9 9 0.23
10 28 0.72
11 2 0.05
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.36
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:147082 original size:15 final size:15
Alignment explanation
Indices: 147062--147091 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
147052 ATTTTTTCAA
*
147062 TTCTTTTTATTTTAT
1 TTCTTTTAATTTTAT
147077 TTCTTTTAATTTTAT
1 TTCTTTTAATTTTAT
147092 CCTTTAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.77
Consensus pattern (15 bp):
TTCTTTTAATTTTAT
Done.