Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014899.1 Kokia drynarioides strain JFW-HI SEQ_129942, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4299
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.36


Found at i:2842 original size:31 final size:31

Alignment explanation


    Indices: 2806--2885  Score: 92
    Period size: 31  Copynumber: 2.6  Consensus size: 31

       2796 TTTTTGATCA

                               *      *    
       2806 AATTTGGTATTCAAACTTGTCACTTTTTTTT
          1 AATTTGGTATTCAAACTTGACACTTTATTTT

                      *                     
       2837 AATTTGGTA-CCTAAACTTGACACTTTATTTT
          1 AATTTGGTATTC-AAACTTGACACTTTATTTT

              *                
       2868 AAGTTGGTACTT-AAACTT
          1 AATTTGGTA-TTCAAACTT

       2886 TTTGGGGTTC


Statistics
Matches: 41,  Mismatches: 5, Indels: 6
        0.79            0.10        0.12

Matches are distributed among these distances:
  30    1  0.02
  31   40  0.98

ACGTcount: A:0.28, C:0.14, G:0.11, T:0.47


Consensus pattern (31 bp):   
AATTTGGTATTCAAACTTGACACTTTATTTT
Done.