Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014908.1 Kokia drynarioides strain JFW-HI SEQ_129951, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16570
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31

Warning! 200 characters in sequence are not A, C, G, or T


Found at i:6327 original size:16 final size:17

Alignment explanation


    Indices: 6297--6328  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       6287 AATAACATCT

                             
       6297 TTAGTAAGCTTCAAAGC
          1 TTAGTAAGCTTCAAAGC

                            
       6314 TTAGTAAG-TTCAAAG
          1 TTAGTAAGCTTCAAAG

       6329 AGTTTAAAGA


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16    7  0.47
  17    8  0.53

ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31


Consensus pattern (17 bp):   
TTAGTAAGCTTCAAAGC

Found at i:6849 original size:194 final size:191

Alignment explanation


    Indices: 6538--6894  Score: 493
    Period size: 194  Copynumber: 1.9  Consensus size: 191

       6528 CTGTACTATA

                *         *                  *      *               *     *  
       6538 AACTGTTCCCTAACGATGCTGCTCACACGAGCTGTCGAGAGTATGCAATAAGCATAGTCCTAGCC
          1 AACTATTCCCTAACAATGCTGCTCACACGAGCTATCGAGAATATGCAATAAGCATAATCCTAACC

               *                                                             
       6603 ATCGTAGGGCCTGTAATCCATTTAGGATCCATATCTCTTTCCCGAGTCACGATGCTGCTCACACG
         66 ATCATAGGGCCTGTAATCCATTTAGGATCCATATCTCTTTCCCGAGTCACGATGCTGCTCACACG

                                                                         
       6668 AGCTGTCGAGGACTCACAACATAAGCGGTACCTTAACCATCGATATGATATATGTGCATAT
        131 AGCTGTCGAGGACTCACAACATAAGCGGTACCTTAACCATCGATATGATATATGTGCATAT

                                           *                *  *             
       6729 AACTATTCCCTAACAATGCTGCTCACACGAGTTATCGAGAATATGCATTTATGCATAAAT-CTCA
          1 AACTATTCCCTAACAATGCTGCTCACACGAGCTATCGAGAATATGCA-ATAAGCAT-AATCCT-A

                 *                               *       *    *              
       6793 ACCATTATAGGGCCTGTAATCCATTTAGGATCCATATTTCTTTTCTC-ATTTCACGATGCTGCTC
         63 ACCATCATAGGGCCTGTAATCCATTTAGGATCCATATCTC-TTTCCCGA-GTCACGATGCTGCTC

                       *        **      *         
       6857 ACACGAGCTGTTGAGGACTCGTAACATATGCGGTACCT
        126 ACACGAGCTGTCGAGGACTCACAACATAAGCGGTACCT

       6895 CAGCTATCGT


Statistics
Matches: 143,  Mismatches: 18, Indels: 7
        0.85            0.11        0.04

Matches are distributed among these distances:
 191   42  0.29
 192    8  0.06
 193   40  0.28
 194   53  0.37

ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29


Consensus pattern (191 bp):   
AACTATTCCCTAACAATGCTGCTCACACGAGCTATCGAGAATATGCAATAAGCATAATCCTAACC
ATCATAGGGCCTGTAATCCATTTAGGATCCATATCTCTTTCCCGAGTCACGATGCTGCTCACACG
AGCTGTCGAGGACTCACAACATAAGCGGTACCTTAACCATCGATATGATATATGTGCATAT
Done.