Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014912.1 Kokia drynarioides strain JFW-HI SEQ_129955, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2812
ACGTcount: A:0.23, C:0.17, G:0.15, T:0.22

Warning! 654 characters in sequence are not A, C, G, or T


Found at i:900 original size:45 final size:45

Alignment explanation


    Indices: 838--1050  Score: 302
    Period size: 45  Copynumber: 4.7  Consensus size: 45

        828 GCATAGCTCA

                                   *                     
        838 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATGC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

                                                  *      
        883 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCACAATGC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

                *          *                  *          
        928 TCAATCCAAGGATATTAGCCTCAATTTGACGAGCAACCGCAATGC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

                                          *            * 
        973 TCAAGCCAAGGATATCAGCCTCAATTTGACAAGCCACCGCAATAC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

                  **           *  * *         
       1018 T-ATAGGGAAGGATATCAGGCTGAGTTTGACGAG
          1 TCA-AGCCAAGGATATCAGCCTCAATTTGACGAG

       1051 GCATCGCGAT


Statistics
Matches: 150,  Mismatches: 17, Indels: 2
        0.89            0.10        0.01

Matches are distributed among these distances:
  44    1  0.01
  45  149  0.99

ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20


Consensus pattern (45 bp):   
TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

Done.