Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014913.1 Kokia drynarioides strain JFW-HI SEQ_129956, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 31379
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35

Warning! 87 characters in sequence are not A, C, G, or T


Found at i:20869 original size:28 final size:28

Alignment explanation


    Indices: 20803--20858  Score: 71
    Period size: 27  Copynumber: 2.1  Consensus size: 28

      20793 TTCAACTCTC

                     *      *      *    
      20803 AACCCC-AAACTCAAACCCTAAATTCTA
          1 AACCCCGAACCTCAAAACCTAAAATCTA

                                        
      20830 AACCCCGAACCTCAAAACC-AAAATCTA
          1 AACCCCGAACCTCAAAACCTAAAATCTA

              
      20857 AA
          1 AA

      20859 ACTCCGTACC


Statistics
Matches: 25,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  27   15  0.60
  28   10  0.40

ACGTcount: A:0.48, C:0.36, G:0.02, T:0.14


Consensus pattern (28 bp):   
AACCCCGAACCTCAAAACCTAAAATCTA

Found at i:27021 original size:6 final size:6

Alignment explanation


    Indices: 27012--27051  Score: 71
    Period size: 6  Copynumber: 6.7  Consensus size: 6

      27002 TATATATACC

                *                                         
      27012 CACACA CACATA CACATA CACATA CACATA CACATA CACA
          1 CACATA CACATA CACATA CACATA CACATA CACATA CACA

      27052 CTCAAACCAG


Statistics
Matches: 33,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   6   33  1.00

ACGTcount: A:0.50, C:0.38, G:0.00, T:0.12


Consensus pattern (6 bp):   
CACATA

Found at i:31352 original size:2 final size:2

Alignment explanation


    Indices: 31347--31379  Score: 66
    Period size: 2  Copynumber: 16.5  Consensus size: 2

      31337 ATAATCACAC

                                                             
      31347 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.