genome.fa.s14915.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014915.1 Kokia drynarioides strain JFW-HI SEQ_129958, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  192502

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1844--2044	99	2.0	100	91	0	323	29	16	10	42	1.82
3200--3247	24	1.9	26	84	16	66	22	2	10	64	1.35
4143--4363	111	2.0	111	91	0	361	30	20	19	29	1.97
4565--4712	49	3.0	49	80	5	138	29	10	14	45	1.78
7751--7929	91	2.0	91	97	0	340	30	14	19	35	1.92
19960--20012	25	2.1	25	96	0	97	35	11	13	39	1.80
22395--22440	24	1.9	25	86	8	69	54	6	4	34	1.46
23810--23862	22	2.3	23	80	6	63	35	0	3	60	1.15
25680--25801	60	2.0	60	80	3	138	38	12	41	7	1.71
26922--27053	40	3.3	40	73	12	117	37	2	14	46	1.57
26963--27025	20	3.1	21	75	9	67	36	1	11	50	1.47
26878--27052	80	2.2	81	83	3	210	34	4	13	47	1.62
27042--27082	20	2.0	21	85	4	57	39	2	9	48	1.49
28393--28431	20	2.0	20	94	0	69	43	7	5	43	1.55
28649--28704	20	2.8	20	78	5	60	44	3	8	42	1.53
28652--28738	40	2.2	40	83	4	104	44	3	8	43	1.50
29006--29070	20	3.2	20	82	0	76	44	6	7	41	1.58
28997--29080	40	2.1	40	82	4	98	46	4	7	41	1.52
29096--29171	20	3.8	20	80	3	73	34	7	15	42	1.76
29142--29184	20	2.2	20	83	8	52	32	11	13	41	1.81
29277--29327	20	2.5	20	72	12	50	39	7	11	41	1.71
33285--33348	24	2.7	24	97	0	119	28	9	20	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33338--33384	23	2.0	23	84	8	60	44	10	12	31	1.77
33381--33432	14	3.6	14	75	10	59	59	13	5	21	1.55
50411--50508	3	32.3	3	77	11	85	62	1	2	34	1.14
50411--50479	32	2.2	32	84	5	86	65	0	1	33	1.02
50721--50769	22	2.5	20	78	18	57	69	0	4	26	1.06
50717--50769	25	2.1	26	86	10	74	67	0	5	26	1.12
50798--50845	20	2.4	19	83	10	60	79	2	2	16	0.93
50817--50894	6	12.3	6	71	15	59	75	1	1	21	0.94
50793--50891	21	4.5	21	74	20	78	75	2	2	20	1.00
50794--50846	18	2.9	17	75	20	54	77	1	1	18	0.96
62461--62486	12	2.2	12	100	0	52	23	0	0	76	0.78
77984--78017	17	1.9	18	88	5	52	55	20	0	23	1.43
78671--78716	21	2.2	21	84	7	58	43	6	4	45	1.49
89384--89588	109	1.9	108	83	8	265	40	13	13	33	1.83
92962--93031	23	3.0	23	78	4	77	17	17	18	47	1.83
95950--95993	2	22.0	2	100	0	88	0	50	0	50	1.00
100038--100076	21	1.9	20	84	5	51	38	10	5	46	1.60
100579--100644	29	2.3	29	81	0	78	42	1	6	50	1.36
103382--103423	21	2.0	21	85	4	57	40	11	9	38	1.75
113325--113393	10	7.1	9	78	12	57	66	1	0	31	1.00
113325--113393	19	3.5	20	77	14	72	66	1	0	31	1.00
120649--120708	31	1.9	32	83	10	79	38	1	6	53	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120969--121027	2	29.5	2	89	0	91	49	3	1	45	1.28
130859--130905	19	2.4	19	85	3	58	63	6	0	29	1.19
130859--130911	20	2.7	19	85	5	61	62	7	0	30	1.23
138261--138339	21	3.9	21	69	9	56	35	0	2	62	1.09
138315--138362	22	2.2	22	85	3	62	41	0	0	58	0.98
142626--142667	19	2.2	19	91	4	66	9	14	2	73	1.18
142625--142669	20	2.3	19	85	11	63	11	13	2	73	1.19
143936--143970	9	4.0	9	88	7	54	68	0	0	31	0.90
153769--153807	18	2.0	20	85	9	55	28	7	5	58	1.47
155838--155893	29	2.0	29	86	10	80	42	14	1	41	1.56
157746--157796	26	2.1	23	82	10	57	52	7	11	27	1.65
158211--158271	24	2.5	24	86	0	86	52	11	9	26	1.68
160214--160299	24	3.6	24	90	0	127	52	9	11	26	1.68
160776--160880	52	2.0	52	85	3	140	40	2	6	50	1.43
165505--165667	81	2.0	81	93	0	281	39	20	20	19	1.92
171142--171200	21	2.8	22	82	5	59	67	3	1	27	1.16
174026--174064	17	2.4	16	83	8	51	71	0	0	28	0.86
174654--174687	17	2.0	17	88	0	50	5	23	0	70	1.09
174822--174855	15	2.1	17	89	10	54	5	23	2	67	1.26
178498--178531	18	1.9	18	88	5	52	29	0	5	64	1.17
183091--183271	89	2.0	89	97	0	344	28	18	12	40	1.87
183793--183934	58	2.4	58	83	4	171	45	1	2	50	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183894--183944	25	2.0	26	85	11	70	50	3	1	43	1.31
192329--192407	31	2.7	31	79	14	87	59	1	2	36	1.19

Tables:   1

The End!